Double letter species prefix: gene normalization studies usually recognize the single letter prefix (e.g. “m”) to a corresponding organism (e.g. mouse). However, many gene names contain a double letter-prefix that represents the species (e.g. “At” in AtGRP7 stands for Arabidopsis thaliana).
Oct 25, 2023
Oct 6, 2010 · For this, an important step is identifying gene and protein names (termed entities). After identification, gene names must be mapped to database ...
Oct 6, 2010 · Cite this article as: Solt et al.: Species identification for gene name normalization. BMC Bioinformatics 2010 11(Suppl 5):P5. Submit your ...
species recognition module can recognize and normalize the designated symbol in the prefixes of a gene name that refers to an abbreviation of a species name.
The automatic assignment of species information to the corresponding genes in a research article is a critically important step in the gene normalization task, ...
Inspired by the success of Linnaeus, SR4GN was developed as a standalone, command-line tool that can be readily used to recognize species' names, map them to ...
We focused on listing the normalized form of genes and gene products discussed in an article. We broke this into two steps: gene mention tagging in text, ...
Covering the more traditional topics, Solt et al. presented their work on species identification for the task of gene normalization [7] , while Tikk et al.
Oct 3, 2023 · This poses a challenge for accurately identifying and linking gene mentions to their corresponding entries in databases such as NCBI Gene or ...
Species identification for gene name normalization. Solt, Illés; Tikk, Domonkos; Leser, Ulf. BMC Bioinformatics; London Vol. 11, Iss. Suppl 5, (2010): P5 ...