In eukaryotic genomes, tandem repeats represent two or more adjacent copies of pattern nucleotides. They are the most principal cause of various genetic ...
This paper presents uses of four tools for search tandem repeats and investigates Arabidopsis thaliana's sequence to compare the software's performance.
May 10, 2023 · To provide validation of TRASH we report its performance and output on the Arabidopsis thaliana Col-CEN genome assembly (Naish et al. 2021).
In this review, we have systematically separated the algorithmic aspect of the search tools from the influence of the parameter settings. We hope that this will ...
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Jul 5, 2023 · To test if the Arabidopsis thaliana genome possesses any sequences similar to SIRC but undetectable due to repeat mismatches, we estimated ...
Apr 12, 2021 · Our results support a general link between gene expression variation and STR length variation in A. thaliana.
This review systematically separated the algorithmic aspect of the search tools from the influence of the parameter settings to give a better understanding ...
Aug 24, 2024 · Tandem repeats (TRs) are genomic regions that tandemly change in repeat number, which are often multiallelic.
Oct 23, 2018 · There is immediate need for an accurate tool for detecting microsatellites in the new genomes. The current available tools have limitations. As ...
Jun 1, 2022 · We identified 26,079 simple sequence repeats, with a total length of 400,090 bp, and 46,108 tandem repeats, with a total length of 15,470,062 bp ...