In this paper we explore the use of in-memory operations of Hybrid Memory Cubes (HMC) to accelerate k-mer counting. The resulting accelerator is compared to an ...

Abstract—k-mer counting is an essential algorithm found in many genomic related processes. It may seem like a rather trivial.

The use of in-memory operations of Hybrid Memory Cubes (HMC) to accelerate k-mer counting is explored and the resulting accelerator is compared to an ...

Abstract—As FPGAs are integrated into to the cloud, they become useful in a number of areas where they were not traditionally considered, such as processing ...

k-mer counting is an essential algorithm found in many genomic related processes. It may seem like a rather trivial task but is in fact computationally ...

The work in [34] discusses the design of external memory systems for FPGA-based acceleration of large Bloom filters for k-mer counting in NGS data. Our own ...

This paper describes how and why K-mer counting is one such use for an FPGA-attached Hybrid Memory Cube (HMC), and why the HMC's high random-access rate is ...

k-mer counting with FPGAs and HMC in-memory operations. R Wertenbroek, Y Thoma. 2018 NASA/ESA Conference on Adaptive Hardware and Systems (AHS), 233-240, 2018.

Jan 18, 2024 · The primary purpose of k-mer counting in a DBG assembler is to reduce the data size by removing potentially erroneous k-mers (i.e., graph nodes) ...

k-mer counting with FPGAs and HMC in-memory operat[...] - Wertenbroek, Rick et al. > Show tabs. Comments (0) | Reviews (0).