Galaxy Community Help

Topic	Replies	Views	Activity
What should I do if my data exceeds the given 250GB of storage? account , resources , manage-quota , scratch-space I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?	3	477	August 15, 2024
Troubleshooting resources for errors or unexpected results share-or-publish , troubleshooting , queued-gray-datasets , resources How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…	5	10388	April 17, 2024
Custom Tool Works Only When Gunicorn Encounters Port Error – Need Help Resolving Issue server-admin , tool-dev , galaxy-local	2	9	November 16, 2024
Seurat FilterCells tool-help , single-cell	2	7	November 16, 2024
PhyloseqR not showed up, not working server-open-issue , tool-help , interactive_tool_phyloseq	9	26	November 15, 2024
SnpEff database compatibility tool-help , snpeff	3	7	November 15, 2024
qiime2 feature-classifier classify-consensus-blast usegalaxy.org support troubleshooting , qiime2	1	6	November 15, 2024
Phyloseq R object from Biom FILE interactive_tool_phyloseq	3	5	November 15, 2024
MyriMatch - Trouble uploading raw MS file usegalaxy.org support datatype , tool-help , myrimatch	21	31	November 15, 2024
Bandage Image Error usegalaxy.eu support tutorial-feedback	2	7	November 15, 2024
Adding Galaxy EU workflow to IWC Library - Planemo installation usegalaxy.eu support workflow , troubleshooting	6	17	November 15, 2024
Trouble whith demultiplexing tool of FROGS 4.1 troubleshooting , usegalaxyfr	2	5	November 15, 2024
Problems with RMSD analysis relate to the Guide "High Throughput Molecular Dynamics and Analysis"	1	2	November 14, 2024
GeNomad database usegalaxy.org support reference-index	1	3	November 14, 2024
Third Party Identities usegalaxy.eu support dataset , account , storage-dashboard	1	5	November 14, 2024
Quota exceeded issue usegalaxy.eu support storage-dashboard	3	9	November 14, 2024
khmer: Extract partitions usegalaxy.org support tool-help , khmer_extract_partitions	6	4	November 14, 2024
Complexity of tools and user feedback tutorial-feedback	1	21	November 14, 2024
libjemalloc.so.2: cannot allocate memory in static TLS block Error on Galaxy Startup server-admin , galaxy-local	1	4	November 13, 2024
Kraken2 database reference-index , metagenomics	18	229	November 13, 2024
how to run BRAC1 IN GALAXY tool-help	1	3	November 13, 2024
mi queue has frozen.....again queued-gray-datasets	2	3	November 13, 2024
ATAC-seq Analysis Using MACS2 Callpeak usegalaxy.org support troubleshooting	2	4	November 13, 2024
Hicup Pipeline broken usegalaxy.org support tool-help , hicup_hicup	1	5	November 13, 2024
Can miRNA differential expression analysis be performed using a mRNA-like pipeline with a GTF file from miRBase? mirna	2	13	November 12, 2024
ATAC-Seq Analysis Using MACS2 Callpeak usegalaxy.org support gtn-tutorial , atac-seq	1	9	November 12, 2024
Shovill and Pilon correction usegalaxy.eu support tool-help , shovill	1	6	November 12, 2024
HISAT2 Error--Input library collection must match # inputs for reference genome? usegalaxy.org support tool-help , hisat2	1	4	November 12, 2024
Files for miRNA differential expression analysis mirna , reference-genome	9	1848	November 12, 2024
Different totals depending on database used for Krona pie chart usegalaxy.org support kraken2 , mothur_taxonomy_to_krona	4	10	November 11, 2024

What should I do if my data exceeds the given 250GB of storage?

I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?

3

477

August 15, 2024

Troubleshooting resources for errors or unexpected results

share-or-publish , troubleshooting , queued-gray-datasets , resources

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…

5

10388

April 17, 2024

Custom Tool Works Only When Gunicorn Encounters Port Error – Need Help Resolving Issue

server-admin , tool-dev , galaxy-local