Estrogen receptors (ERs) comprise several nuclear and membrane-bound receptors with different tis... more Estrogen receptors (ERs) comprise several nuclear and membrane-bound receptors with different tissue-specific functions. ERα and ERβ are two nuclear members of this family, whereas G protein-coupled estrogen receptor (GPER), ER-X, and Gq-coupled membrane estrogen receptor (Gq-mER) are membrane-bound G protein-coupled proteins. ERα participates in the development and function of several body organs such as the reproductive system, brain, heart and musculoskeletal systems. ERβ has a highly tissue-specific expression pattern, particularly in the female reproductive system, and exerts tumor-suppressive roles in some tissues. Recent studies have revealed functional links between both nuclear and membrane-bound ERs and non-coding RNAs. Several oncogenic lncRNAs and miRNAs have been shown to exert their effects through the modulation of the expression of ERs. Moreover, treatment with estradiol has been shown to alter the malignant behavior of cancer cells through functional axes composed o...
The genetic variants of the long non-coding RNA ANRIL (an antisense noncoding RNA in the INK4 loc... more The genetic variants of the long non-coding RNA ANRIL (an antisense noncoding RNA in the INK4 locus) as well as its expression have been shown to be associated with several human diseases including cancers. The aim of this study was to examine the association of ANRIL variants with breast cancer susceptibility in Iranian patients. In this case-control study, we genotyped rs1333045, rs4977574, rs1333048 and rs10757278 single nucleotide polymorphisms (SNPs) in 122 breast can- cer patients as well as in 200 normal age-matched subjects by tetra-primer amplification refractory mutation system polymerase chain reaction (T-ARMS-PCR). The TT genotype at rs1333045 was significantly over-represented among pa- tients (P=0.038) but did not remain significant after multiple-testing correction. In addi- tion, among all observed haplotypes (with SNP order of rs1333045, rs1333048 rs4977574 and rs10757278), four haplotypes were shown to be associated with breast cancer risk. However, after multiple ...
Interleukin 7 receptor alpha (IL7RA) gene that encodes a subunit of IL7 receptor has been reporte... more Interleukin 7 receptor alpha (IL7RA) gene that encodes a subunit of IL7 receptor has been reported to be associated with different immunologic disease. Multiple Sclerosis (MS) patients have shown an aberrant blood level of soluble form of IL7R protein. The genomic changes in the sequence of this gene have been suggested to be correlated with its altered splicing specially, variants in the exon 6 of the gene have been reported to influence the maintenance or skipping of this exon and control the soluble or insoluble form of the final product. In order to evaluate this changes in the IL7RA gene and to determine a possible correlation between these changes and the MS susceptibility the whole sequence of the exon 6 and 7 and their flanking sequences were analyzed. In this regard, we investigate the sequence changes of the exon 6 and 7 of the IL7RA gene in 75 relapsing-remitting MS patients and compare the results with 75 healthy control using sequence analyzing. The results of the seque...
Breast cancer is the most common type of cancer and the second leading cause of cancer death in f... more Breast cancer is the most common type of cancer and the second leading cause of cancer death in females. Despite numerous studies in this field, the etiology and clinical behavior of breast tumors have not been understood yet. Retinoid orphan nuclear receptor alpha (RORA) is a member of the orphan nuclear factor family involved in the regulation of lipid and steroid metabolism, immune response and circadian rhythms. Recent evidences support its role as a tumor suppressor gene. To find the associations between RORA polymorphisms and breast cancer. In the present study, we evaluated the association between two functional polymorphisms in RORA (rs11639084 and rs4774388) and breast cancer risk in a population of 122 Iranian breast cancer patients as well as 200 healthy subjects by means of tetra primer-amplification refractory mutation system-PCR (4P-ARMS-PCR) method. The rs4774388 has been shown to be associated with breast cancer risk in recessive inheritance model (OR (95% CI = 0.51 ...
Autism spectrum disorder (ASD) is a neurodevelopmental disorder with various epidemiologic, genet... more Autism spectrum disorder (ASD) is a neurodevelopmental disorder with various epidemiologic, genetic, epigenetic, and environmental factors being associated with it. The observed sex bias in ASD towards male has prompted investigators to propose sex-dependent mechanisms for ASD. Retinoic acid-related orphan receptor-alpha (RORA) is a new autism candidate gene that has been shown to be differentially regulated by male and female hormones. Previous studies have shown deregulation of its expression in the prefrontal cortex and the cerebellum of ASD patients. In the present study we aimed at identification of the possible associations between two functional polymorphisms in the RORA gene (rs11639084 and rs4774388) and the risk of ASD in 518 Iranian ASD patients and 472 age, gender, and ethnic-matched healthy controls by means of tetra primer-amplification refractory mutation system-PCR. The allele and genotype frequencies of rs11639084 were not significantly different between patients an...
The international journal of occupational and environmental medicine, Apr 1, 2017
Over the past several years our laboratories have investigated different aspects of the challengi... more Over the past several years our laboratories have investigated different aspects of the challenging issue of the alterations in bacterial susceptibility to antibiotics induced by physical stresses. To explore the bacterial susceptibility to antibiotics in samples of Salmonella enterica subsp. enterica serovar Typhimurium (S. typhimurium), Staphylococcus aureus, and Klebsiella pneumoniae after exposure to gamma radiation emitted from the soil samples taken from the high background radiation areas of Ramsar, northern Iran. Standard Kirby-Bauer test, which evaluates the size of the zone of inhibition as an indicator of the susceptibility of different bacteria to antibiotics, was used in this study. The maximum alteration of the diameter of inhibition zone was found for K. pneumoniae when tested for ciprofloxacin. In this case, the mean diameter of no growth zone in non-irradiated control samples of K. pneumoniae was 20.3 (SD 0.6) mm; it was 14.7 (SD 0.6) mm in irradiated samples. On th...
Multiple sclerosis (MS) is a chronic disorder resulting from destruction of the myelin or insulat... more Multiple sclerosis (MS) is a chronic disorder resulting from destruction of the myelin or insulating covers of neurons in the central nervous system (CNS). Several lines of evidence suggest a role for immune response in the occurrence and progression of this disorder. Several disease-modifying agents (DMA) including β-interferons (IFNβ) are being used in MS patients in order to stop the disease at the early inflammatory stage, postpone disease progression and diminish future disability. Phospholipase D1 (PLD1) is a critical enzyme responsible for the making lipid second messenger phosphatidic acid. It has an established function in regulation of immune response. In the present study we have evaluated PLD1 transcript levels and plasma concentrations in 78 relapsing-remitting MS (RRMS) patients as well as 78 normal age- and sex-matched healthy subjects using real-time quantitative RT-PCR and enzyme-linked immunosorbent assay (ELISA), respectively. Significant PLD1 down-regulation has been observed in total MS patients compared with controls (P < 0.001) as well as IFN-β responders (P = 0.034) and non-responders (P < 0.001) compared with controls, respectively. However, a significant up-regulation has been detected in IFN-β responders compared with non-responders (P = 0.047). In both males and females groups, significant down-regulations have been detected in patients compared with controls (P = 0.014 and P = 0.002, respectively). The same results have been detected in PLD1 plasma concentrations. In conclusion, PLD1 transcripts in blood and its plasma concentrations can be used as putative biomarkers for evaluation of therapeutic responses to IFN-β in RRMS patients. However, this result should be validated in future studies.
Multiple sclerosis (MS) is a chronic autoimmune disease, and the most common cause of nontraumati... more Multiple sclerosis (MS) is a chronic autoimmune disease, and the most common cause of nontraumatic disability in young people. The etiology of this disease is not well defined yet. Cytokines play an important role in differentiation, maturation and survival of a wide range of cells, including cells of the immune system. Suppressor of cytokine signaling (SOCS) proteins are the most important regulators of this cytokine signaling pathway. The aim of present study was to compare the expression levels of SOCS1, SOCS2, SOCS3 and SOCS5 genes in the blood of 50 relapsing-remitting MS (RR-MS) patients and 50 healthy controls by Taqman Quantitative Real-Time PCR in patients and healthy control group. We observed that SOCS1 and SOCS5 expression was significantly down-regulated (P=0.045 and P=0.044, respectively); whereas, no significant difference was observed between MS patients and controls for SOCS2 and SOCS3 gene expression (P=0.747 and P=0.439, respectively). In addition, there was no significant correlation between the expression of SOCS1, SOCS2, SOCS3 and SOCS5 genes and clinical findings, such as the level of physical disability in the MS patients according to the Kurtzke Expanded Disability Status Scale (EDSS) criterion and disease duration. However, a significant positive correlation was observed between expression levels of SOCS genes. This study shows that loss of balance among various members of the SOCS family proteins may contribute to pathophysiology of multiple sclerosis.
ABSTRACT Bioactive glasses represent a class of attractive materials in bone reconstruction. This... more ABSTRACT Bioactive glasses represent a class of attractive materials in bone reconstruction. This study describes the detailed preparation and characterization of a silicate-based bioactive glass-ceramic (R-SBgC). Synthesis of bioactive glasses using the sol–gel method has advantages compared to the melting method. However, expensive raw materials are required and pose a major issue. To overcome this, R-SBgC was synthesized via the sol–gel method using Rice Husk (RH) as a natural silica precursor. The RH was heat treated and used as an alternative to tetraethyl orthosilicate (TEOS), which is a common synthetic silica precursor. X-ray diffraction (XRD), X-ray Fluorescence (XRF) and Scanning Electron Microscopy (SEM) were used to characterize the rice husk ash (RHA). The findings reveal that the extracted silica has a high purity (~ 99%). The synthesized R-SBgC powder was characterized using SEM, Energy Dispersive X-ray Analysis (EDX), XRD, XRF and Fourier-Transform Infrared Spectroscopy (FTIR) to complete the morphological and elemental analysis. Moreover, in vitro bioactivity via an immersion assessment was conducted for up to 14 days. The HA layer formation, which is an indicator of the bioactivity on the surface of the R-SBgC, was confirmed using SEM, EDX and further by FTIR. Biocompatibility of the R-SBgC was evaluated in vitro. After 3 days of human bone marrow stromal cell (hBMSC) seeding, SEM analysis revealed cell attachment on the surface of the R-SBgC. Alamar blue and XTT cytotoxic assays demonstrated cell proliferation abilities and the non-cytotoxic effect of the R-SBgC. Altogether, the results demonstrate that prepared rice husk-derived bioactive glass ceramic may be a promising carrier for tissue engineering applications.
Communications in Computer and Information Science, 2009
... on Hyper Plane Adjustment Mohammad Taheri, Elham Chitsaz, Seraj D. Katebi, and Mansoor Z. Jah... more ... on Hyper Plane Adjustment Mohammad Taheri, Elham Chitsaz, Seraj D. Katebi, and Mansoor Z. Jahromi ... STEP 3: { } M CL M CL CL CL + − = ) max( , ) min( j WHERE, M IS A BIG NUMBER (100 IN THIS PAPER). ... 2.2 Mountain-Climbing Search Strategy (MCSS) ...
Estrogen receptors (ERs) comprise several nuclear and membrane-bound receptors with different tis... more Estrogen receptors (ERs) comprise several nuclear and membrane-bound receptors with different tissue-specific functions. ERα and ERβ are two nuclear members of this family, whereas G protein-coupled estrogen receptor (GPER), ER-X, and Gq-coupled membrane estrogen receptor (Gq-mER) are membrane-bound G protein-coupled proteins. ERα participates in the development and function of several body organs such as the reproductive system, brain, heart and musculoskeletal systems. ERβ has a highly tissue-specific expression pattern, particularly in the female reproductive system, and exerts tumor-suppressive roles in some tissues. Recent studies have revealed functional links between both nuclear and membrane-bound ERs and non-coding RNAs. Several oncogenic lncRNAs and miRNAs have been shown to exert their effects through the modulation of the expression of ERs. Moreover, treatment with estradiol has been shown to alter the malignant behavior of cancer cells through functional axes composed o...
The genetic variants of the long non-coding RNA ANRIL (an antisense noncoding RNA in the INK4 loc... more The genetic variants of the long non-coding RNA ANRIL (an antisense noncoding RNA in the INK4 locus) as well as its expression have been shown to be associated with several human diseases including cancers. The aim of this study was to examine the association of ANRIL variants with breast cancer susceptibility in Iranian patients. In this case-control study, we genotyped rs1333045, rs4977574, rs1333048 and rs10757278 single nucleotide polymorphisms (SNPs) in 122 breast can- cer patients as well as in 200 normal age-matched subjects by tetra-primer amplification refractory mutation system polymerase chain reaction (T-ARMS-PCR). The TT genotype at rs1333045 was significantly over-represented among pa- tients (P=0.038) but did not remain significant after multiple-testing correction. In addi- tion, among all observed haplotypes (with SNP order of rs1333045, rs1333048 rs4977574 and rs10757278), four haplotypes were shown to be associated with breast cancer risk. However, after multiple ...
Interleukin 7 receptor alpha (IL7RA) gene that encodes a subunit of IL7 receptor has been reporte... more Interleukin 7 receptor alpha (IL7RA) gene that encodes a subunit of IL7 receptor has been reported to be associated with different immunologic disease. Multiple Sclerosis (MS) patients have shown an aberrant blood level of soluble form of IL7R protein. The genomic changes in the sequence of this gene have been suggested to be correlated with its altered splicing specially, variants in the exon 6 of the gene have been reported to influence the maintenance or skipping of this exon and control the soluble or insoluble form of the final product. In order to evaluate this changes in the IL7RA gene and to determine a possible correlation between these changes and the MS susceptibility the whole sequence of the exon 6 and 7 and their flanking sequences were analyzed. In this regard, we investigate the sequence changes of the exon 6 and 7 of the IL7RA gene in 75 relapsing-remitting MS patients and compare the results with 75 healthy control using sequence analyzing. The results of the seque...
Breast cancer is the most common type of cancer and the second leading cause of cancer death in f... more Breast cancer is the most common type of cancer and the second leading cause of cancer death in females. Despite numerous studies in this field, the etiology and clinical behavior of breast tumors have not been understood yet. Retinoid orphan nuclear receptor alpha (RORA) is a member of the orphan nuclear factor family involved in the regulation of lipid and steroid metabolism, immune response and circadian rhythms. Recent evidences support its role as a tumor suppressor gene. To find the associations between RORA polymorphisms and breast cancer. In the present study, we evaluated the association between two functional polymorphisms in RORA (rs11639084 and rs4774388) and breast cancer risk in a population of 122 Iranian breast cancer patients as well as 200 healthy subjects by means of tetra primer-amplification refractory mutation system-PCR (4P-ARMS-PCR) method. The rs4774388 has been shown to be associated with breast cancer risk in recessive inheritance model (OR (95% CI = 0.51 ...
Autism spectrum disorder (ASD) is a neurodevelopmental disorder with various epidemiologic, genet... more Autism spectrum disorder (ASD) is a neurodevelopmental disorder with various epidemiologic, genetic, epigenetic, and environmental factors being associated with it. The observed sex bias in ASD towards male has prompted investigators to propose sex-dependent mechanisms for ASD. Retinoic acid-related orphan receptor-alpha (RORA) is a new autism candidate gene that has been shown to be differentially regulated by male and female hormones. Previous studies have shown deregulation of its expression in the prefrontal cortex and the cerebellum of ASD patients. In the present study we aimed at identification of the possible associations between two functional polymorphisms in the RORA gene (rs11639084 and rs4774388) and the risk of ASD in 518 Iranian ASD patients and 472 age, gender, and ethnic-matched healthy controls by means of tetra primer-amplification refractory mutation system-PCR. The allele and genotype frequencies of rs11639084 were not significantly different between patients an...
The international journal of occupational and environmental medicine, Apr 1, 2017
Over the past several years our laboratories have investigated different aspects of the challengi... more Over the past several years our laboratories have investigated different aspects of the challenging issue of the alterations in bacterial susceptibility to antibiotics induced by physical stresses. To explore the bacterial susceptibility to antibiotics in samples of Salmonella enterica subsp. enterica serovar Typhimurium (S. typhimurium), Staphylococcus aureus, and Klebsiella pneumoniae after exposure to gamma radiation emitted from the soil samples taken from the high background radiation areas of Ramsar, northern Iran. Standard Kirby-Bauer test, which evaluates the size of the zone of inhibition as an indicator of the susceptibility of different bacteria to antibiotics, was used in this study. The maximum alteration of the diameter of inhibition zone was found for K. pneumoniae when tested for ciprofloxacin. In this case, the mean diameter of no growth zone in non-irradiated control samples of K. pneumoniae was 20.3 (SD 0.6) mm; it was 14.7 (SD 0.6) mm in irradiated samples. On th...
Multiple sclerosis (MS) is a chronic disorder resulting from destruction of the myelin or insulat... more Multiple sclerosis (MS) is a chronic disorder resulting from destruction of the myelin or insulating covers of neurons in the central nervous system (CNS). Several lines of evidence suggest a role for immune response in the occurrence and progression of this disorder. Several disease-modifying agents (DMA) including β-interferons (IFNβ) are being used in MS patients in order to stop the disease at the early inflammatory stage, postpone disease progression and diminish future disability. Phospholipase D1 (PLD1) is a critical enzyme responsible for the making lipid second messenger phosphatidic acid. It has an established function in regulation of immune response. In the present study we have evaluated PLD1 transcript levels and plasma concentrations in 78 relapsing-remitting MS (RRMS) patients as well as 78 normal age- and sex-matched healthy subjects using real-time quantitative RT-PCR and enzyme-linked immunosorbent assay (ELISA), respectively. Significant PLD1 down-regulation has been observed in total MS patients compared with controls (P < 0.001) as well as IFN-β responders (P = 0.034) and non-responders (P < 0.001) compared with controls, respectively. However, a significant up-regulation has been detected in IFN-β responders compared with non-responders (P = 0.047). In both males and females groups, significant down-regulations have been detected in patients compared with controls (P = 0.014 and P = 0.002, respectively). The same results have been detected in PLD1 plasma concentrations. In conclusion, PLD1 transcripts in blood and its plasma concentrations can be used as putative biomarkers for evaluation of therapeutic responses to IFN-β in RRMS patients. However, this result should be validated in future studies.
Multiple sclerosis (MS) is a chronic autoimmune disease, and the most common cause of nontraumati... more Multiple sclerosis (MS) is a chronic autoimmune disease, and the most common cause of nontraumatic disability in young people. The etiology of this disease is not well defined yet. Cytokines play an important role in differentiation, maturation and survival of a wide range of cells, including cells of the immune system. Suppressor of cytokine signaling (SOCS) proteins are the most important regulators of this cytokine signaling pathway. The aim of present study was to compare the expression levels of SOCS1, SOCS2, SOCS3 and SOCS5 genes in the blood of 50 relapsing-remitting MS (RR-MS) patients and 50 healthy controls by Taqman Quantitative Real-Time PCR in patients and healthy control group. We observed that SOCS1 and SOCS5 expression was significantly down-regulated (P=0.045 and P=0.044, respectively); whereas, no significant difference was observed between MS patients and controls for SOCS2 and SOCS3 gene expression (P=0.747 and P=0.439, respectively). In addition, there was no significant correlation between the expression of SOCS1, SOCS2, SOCS3 and SOCS5 genes and clinical findings, such as the level of physical disability in the MS patients according to the Kurtzke Expanded Disability Status Scale (EDSS) criterion and disease duration. However, a significant positive correlation was observed between expression levels of SOCS genes. This study shows that loss of balance among various members of the SOCS family proteins may contribute to pathophysiology of multiple sclerosis.
ABSTRACT Bioactive glasses represent a class of attractive materials in bone reconstruction. This... more ABSTRACT Bioactive glasses represent a class of attractive materials in bone reconstruction. This study describes the detailed preparation and characterization of a silicate-based bioactive glass-ceramic (R-SBgC). Synthesis of bioactive glasses using the sol–gel method has advantages compared to the melting method. However, expensive raw materials are required and pose a major issue. To overcome this, R-SBgC was synthesized via the sol–gel method using Rice Husk (RH) as a natural silica precursor. The RH was heat treated and used as an alternative to tetraethyl orthosilicate (TEOS), which is a common synthetic silica precursor. X-ray diffraction (XRD), X-ray Fluorescence (XRF) and Scanning Electron Microscopy (SEM) were used to characterize the rice husk ash (RHA). The findings reveal that the extracted silica has a high purity (~ 99%). The synthesized R-SBgC powder was characterized using SEM, Energy Dispersive X-ray Analysis (EDX), XRD, XRF and Fourier-Transform Infrared Spectroscopy (FTIR) to complete the morphological and elemental analysis. Moreover, in vitro bioactivity via an immersion assessment was conducted for up to 14 days. The HA layer formation, which is an indicator of the bioactivity on the surface of the R-SBgC, was confirmed using SEM, EDX and further by FTIR. Biocompatibility of the R-SBgC was evaluated in vitro. After 3 days of human bone marrow stromal cell (hBMSC) seeding, SEM analysis revealed cell attachment on the surface of the R-SBgC. Alamar blue and XTT cytotoxic assays demonstrated cell proliferation abilities and the non-cytotoxic effect of the R-SBgC. Altogether, the results demonstrate that prepared rice husk-derived bioactive glass ceramic may be a promising carrier for tissue engineering applications.
Communications in Computer and Information Science, 2009
... on Hyper Plane Adjustment Mohammad Taheri, Elham Chitsaz, Seraj D. Katebi, and Mansoor Z. Jah... more ... on Hyper Plane Adjustment Mohammad Taheri, Elham Chitsaz, Seraj D. Katebi, and Mansoor Z. Jahromi ... STEP 3: { } M CL M CL CL CL + − = ) max( , ) min( j WHERE, M IS A BIG NUMBER (100 IN THIS PAPER). ... 2.2 Mountain-Climbing Search Strategy (MCSS) ...
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