Location via proxy:   [ UP ]  
[Report a bug]   [Manage cookies]                
Skip to main content

Unlabeled Abdominal Multi-organ Image Segmentation Based on Semi-supervised Adversarial Training Strategy

  • Conference paper
  • First Online:
Fast and Low-Resource Semi-supervised Abdominal Organ Segmentation (FLARE 2022)

Abstract

The unlabeled images are helpful to generalize segmentation models. To make full use of the unlabeled images, we develop a generator-discriminator training pipeline based on the EfficientSegNet, which has achieved the best performance and efficiency in previous FLARE 2021 challenge. For the generator, a coarse-to-fine strategy is used to produce segmentations of abdominal organs. Then the labeled image and the ground truth are applied to optimize the generator. The discriminator receives the original unlabeled image or the relevant noised image, together with their generated segmentation results to determine which segmentation is better for the unlabeled image. After the adversarial training, the generator is used to segment the unlabeled images. On the FLARE 2022 final testing set of 200 cases, our method achieved an average dice similarity coefficient (DSC) of 0.8497 and a normalized surface dice (NSD) of 0.8915. In the inference stage, the average inference time is 11.67 s per case, and the average GPU (MB) and CPU (%) consumption per case are 311 and 225.6, respectively. The source code is freely available at https://github.com/Yuanke-Pan/Adversarial-EfficientSegNet.

Y. Pan and J. Zhu—These authors contributed equally to this work.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 64.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 84.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Chen, X., Yuan, Y., Zeng, G., Wang, J.: Semi-supervised semantic segmentation with cross pseudo supervision. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 2613–2622 (2021)

    Google Scholar 

  2. Clark, K., et al.: The cancer imaging archive (TCIA): maintaining and operating a public information repository. J. Digit. Imaging 26(6), 1045–1057 (2013)

    Article  Google Scholar 

  3. Heller, N., et al.: The state of the art in kidney and kidney tumor segmentation in contrast-enhanced CT imaging: results of the kits19 challenge. Med. Image Anal. 67, 101821 (2021)

    Article  Google Scholar 

  4. Heller, N., et al.: An international challenge to use artificial intelligence to define the state-of-the-art in kidney and kidney tumor segmentation in CT imaging. Proc. Am. Soc. Clin. Oncol. 38(6), 626–626 (2020)

    Article  Google Scholar 

  5. Isensee, F., et al.: nnU-Net: self-adapting framework for u-net-based medical image segmentation. arXiv preprint arXiv:1809.10486 (2018)

  6. Ma, J., et al.: Fast and low-GPU-memory abdomen CT organ segmentation: the flare challenge. Med. Image Anal. 82, 102616 (2022). https://doi.org/10.1016/j.media.2022.102616

    Article  Google Scholar 

  7. Ma, J., et al.: AbdomenCT-1K: is abdominal organ segmentation a solved problem? IEEE Trans. Pattern Anal. Mach. Intell. 44(10), 6695–6714 (2022)

    Google Scholar 

  8. Silversmith, W., cc3d: Connected components on multilabel 3D & 2D images. (3.2.1). Zenodo (2021). https://doi.org/10.5281/zenodo.571953

  9. Simpson, A.L., et al.: A large annotated medical image dataset for the development and evaluation of segmentation algorithms. arXiv preprint arXiv:1902.09063 (2019)

  10. Tarvainen, A., Valpola, H.: Mean teachers are better role models: weight-averaged consistency targets improve semi-supervised deep learning results. In: Advances in Neural Information Processing Systems, vol. 30 (2017)

    Google Scholar 

  11. Zhang, F., Wang, Y.: Efficient context-aware network for abdominal multi-organ segmentation. arXiv abs/2109.10601 (2021)

    Google Scholar 

  12. Zhang, Y., Yang, L., Chen, J., Fredericksen, M., Hughes, D.P., Chen, D.Z.: Deep adversarial networks for biomedical image segmentation utilizing unannotated images. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10435, pp. 408–416. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-66179-7_47

    Chapter  Google Scholar 

Download references

Acknowledgements

This work was supported by the Project of Educational Commission of Guangdong Province of China (No. 2022ZDJS113). The authors of this paper declare that the segmentation method implemented for participation in the FLARE 2022 challenge has not used any pre-trained models nor additional datasets other than those provided by the organizers. The proposed solution is fully automatic without any manual intervention.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Bingding Huang .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2022 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Pan, Y., Zhu, J., Huang, B. (2022). Unlabeled Abdominal Multi-organ Image Segmentation Based on Semi-supervised Adversarial Training Strategy. In: Ma, J., Wang, B. (eds) Fast and Low-Resource Semi-supervised Abdominal Organ Segmentation. FLARE 2022. Lecture Notes in Computer Science, vol 13816. Springer, Cham. https://doi.org/10.1007/978-3-031-23911-3_2

Download citation

  • DOI: https://doi.org/10.1007/978-3-031-23911-3_2

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-23910-6

  • Online ISBN: 978-3-031-23911-3

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics