Abstract
Diffusion-weighted imaging (DWI) enables investigation of the brain microstructure by probing natural barriers to diffusion in tissues. In this work, we propose a novel generative model of the DW signal based on considerations of the tissue microstructure that gives rise to the diffusion attenuation. We consider that the DW signal can be described as the sum of a large number of individual homogeneous spin packets, each of them undergoing local 3-D Gaussian diffusion represented by a diffusion tensor. We consider that each voxel contains a number of large scale microstructural environments and describe each of them via a matrix-variate Gamma distribution of spin packets. Our novel model of DIstribution of Anisotropic MicrOstructural eNvironments in DWI (DIAMOND) is derived from first principles. It enables characterization of the extra-cellular space, of each individual white matter fascicle in each voxel and provides a novel measure of the microstructure heterogeneity. We determine the number of fascicles at each voxel with a novel model selection framework based upon the minimization of the generalization error. We evaluate our approach with numerous in-vivo experiments, with cross-testing and with pathological DW-MRI. We show that DIAMOND may provide novel biomarkers that captures the tissue integrity.
This work was supported in part by NIH grants 1U01NS082320, R01 NS079788-01A1, R01 EB008015, R01 LM010033, R01 EB013248, P30 HD018655, BCH TRP, R42 MH086984, UL1 TR000170 and R21 EB012177. MT was supported by F.R.S-FNRS and B.A.E.F.
Chapter PDF
Similar content being viewed by others
Keywords
- Tuberous Sclerosis Complex
- Generalization Error
- Tuberous Sclerosis Complex Patient
- Spin Packet
- Model Order Selection
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.
References
Assaf, Y., Basser, P.J.: Composite hindered and restricted model of diffusion (CHARMED) MR imaging of the human brain. Neuroimage 27(1), 48–58 (2005)
Basser, P.J., Pajevic, S.: A normal distribution for tensor-valued random variables: applications to diffusion tensor MRI. IEEE T. Med Imaging 22(7), 785–794 (2003)
Efron, B., Tibshirani, R.: Improvements on cross-validation: The .632 + bootstrap method. Journal of the American Statistical Association 92(438), 548–560 (1997)
Gupta, A.K., Nagar, D.K.: Matrix Variate Distributions. Chapman & Hall/CRC, Boca Raton (2000)
Jian, B., Vemuri, B.C., Ozarslan, E., Carney, P.R., Mareci, T.H.: A novel tensor distribution model for the diffusion-weighted MR signal. Neuroimage 37(1), 164–176 (2007)
Scherrer, B., Taquet, M., Warfield, S.K.: Reliable Selection of the Number of Fascicles in Diffusion Images by Estimation of the Generalization Error. In: Gee, J.C., Joshi, S., Pohl, K.M., Wells, W.M., Zöllei, L. (eds.) IPMI 2013. LNCS, vol. 7917, pp. 742–753. Springer, Heidelberg (2013)
Scherrer, B., Warfield, S.K.: Parametric Representation of Multiple White Matter Fascicles from Cube and Sphere Diffusion MRI. PLoS ONE 7(11) (2012)
Sehy, J.V., Ackerman, J.J., Neil, J.J.: Evidence that both fast and slow water ADC components arise from intracellular space. Magn. Reson. Med. 48, 765–770 (2004)
Yablonskiy, D.A., Bretthorst, G.L., Ackerman, J.J.: Statistical model for diffusion attenuated MR signal. Magn. Reson. Med. 50(4), 664–669 (2003)
Zhang, H., Schneider, T., Wheeler-Kingshott, C.A., Alexander, D.C.: NODDI: practical in vivo neurite orientation dispersion and density imaging of the human brain. Neuroimage 61(4), 1000–1016 (2012)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2013 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Scherrer, B. et al. (2013). Characterizing the DIstribution of Anisotropic MicrO-structural eNvironments with Diffusion-Weighted Imaging (DIAMOND). In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013. MICCAI 2013. Lecture Notes in Computer Science, vol 8151. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-40760-4_65
Download citation
DOI: https://doi.org/10.1007/978-3-642-40760-4_65
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-40759-8
Online ISBN: 978-3-642-40760-4
eBook Packages: Computer ScienceComputer Science (R0)