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Tabu Search Method for Determining Sequences of Amino Acids in Long Polypeptides

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Applications of Evolutionary Computing (EvoWorkshops 2005)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 3449))

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Abstract

The amino acid sequences of proteins determine their structure and functionality, hence methods for reading such sequences are crucial for many areas of biological sciences. Since direct methods for reading amino acid sequences allow for determining only very short fragments, some methods for assembly of these fragments are required. In this paper, tabu search algorithm solving this problem is proposed. Computational tests show its usefulness in the process of determining sequences of amino acids in long polypeptides.

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Author information

Authors and Affiliations

  1. Institute of Computing Science, Poznań University of Technology, Piotrowo 3A, 60-965, Poznań, Poland

    Jacek Błażewicz, Marcin Borowski & Piotr Formanowicz

  2. Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 12/14, 61-704, Poznań, Poland

    Jacek Błażewicz, Piotr Formanowicz & Maciej Stobiecki

Authors
  1. Jacek Błażewicz
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  2. Marcin Borowski
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  3. Piotr Formanowicz
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  4. Maciej Stobiecki
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Editor information

Editors and Affiliations

  1. Johannes Gutenberg University, Mainz, Germany

    Franz Rothlauf

  2. Institute AIFB, University of Karlsruhe, 76128, Karlsruhe, Germany

    Jürgen Branke

  3. Dipartimento di Ingegneria dell’Informazione, Università di Parma,  

    Stefano Cagnoni

  4. School of Mathematical and Computer Science, Heriot-Watt University, EH14 8AS, Edinburgh, UK

    David Wolfe Corne

  5. Institute of Computer Science, University of Bremen, 28359, Bremen, Germany

    Rolf Drechsler

  6. Honda Research Institute Europe GmbH, Offenbach/Main, Germany

    Yaochu Jin

  7. CISUC, Department of Informatics Engineering, University of Coimbra, Polo II of the University of Coimbra, 3030, Coimbra, Portugal

    Penousal Machado

  8. ICIS, Radboud University Nijmegen, The Netherlands

    Elena Marchiori

  9. Universidade de A Coruña, CP 15071, A Coruña, Spain

    Juan Romero

  10. School of Computing Sciences, University of East Anglia, UEA Norwich, NR4 7TJ, Norwich, UK

    George D. Smith

  11. Dipartimento di Automatica e Informatica, Politecnico di Torino, Italy

    Giovanni Squillero

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© 2005 Springer-Verlag Berlin Heidelberg

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Błażewicz, J., Borowski, M., Formanowicz, P., Stobiecki, M. (2005). Tabu Search Method for Determining Sequences of Amino Acids in Long Polypeptides. In: Rothlauf, F., et al. Applications of Evolutionary Computing. EvoWorkshops 2005. Lecture Notes in Computer Science, vol 3449. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-32003-6_3

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  • DOI: https://doi.org/10.1007/978-3-540-32003-6_3

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-25396-9

  • Online ISBN: 978-3-540-32003-6

  • eBook Packages: Computer ScienceComputer Science (R0)

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