(Q21562474)

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A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase genes in "chromalveolate" members

scientific article

A Hypothesis for the Evolution of Nuclear-Encoded, Plastid-Targeted Glyceraldehyde-3-Phosphate Dehydrogenase Genes in “Chromalveolate” Members

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A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase genes in "chromalveolate" members (English)

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Tadashi Maruyama

3

object named as

Tadashi Maruyama

author given names

Tadashi

author last names

Maruyama

1 reference

PubMed publication ID

4 September 2022

author name string

Kiyotaka Takishita

1

author given names

Kiyotaka

author last names

Takishita

1 reference

PubMed publication ID

4 September 2022

Haruyo Yamaguchi

2

author given names

Haruyo

author last names

Yamaguchi

1 reference

PubMed publication ID

4 September 2022

Yuji Inagaki

4

author given names

Yuji

author last names

Inagaki

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PubMed publication ID

4 September 2022

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publication date

2009

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4

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3

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e4737

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copyright license

Creative Commons Attribution 4.0 International

9 March 2009

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April 2022 Public Data File from Crossref

copyright status

0 references

Phylogenomics reshuffles the eukaryotic supergroups

1 reference

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19 March 2017

Kingdom protozoa and its 18 phyla

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19 March 2017

A nuclear gene of eubacterial origin in Euglena gracilis reflects cryptic endosymbioses during protist evolution

1 reference

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19 March 2017

Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

1 reference

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19 March 2017

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

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19 March 2017

ProtTest: selection of best-fit models of protein evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

19 March 2017

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

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19 March 2017

MrBayes 3: Bayesian phylogenetic inference under mixed models

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19 March 2017

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

19 March 2017

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

19 March 2017

Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

19 March 2017

CONSEL: for assessing the confidence of phylogenetic tree selection

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

7 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

Evolution of the apicoplast and its hosts: from heterotrophy to autotrophy and back again

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

A cryptic algal group unveiled: a plastid biosynthesis pathway in the oyster parasite Perkinsus marinus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

A photosynthetic alveolate closely related to apicomplexan parasites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

Chloroplast evolution: secondary symbiogenesis and multiple losses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

Evidence for a chimeric nature of nuclear genomes: eubacterial origin of eukaryotic glyceraldehyde-3-phosphate dehydrogenase genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

The evolutionary origin of red algae as deduced from the nuclear genes encoding cytosolic and chloroplast glyceraldehyde-3-phosphate dehydrogenases from Chondrus crispus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

12 September 2017

Assessing the monophyly of chlorophyll-c containing plastids by multi-gene phylogenies under the unlinked model conditions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

27 September 2017

Chimeric plastid proteome in the Florida "red tide" dinoflagellate Karenia brevis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

27 September 2017

A HYPOTHESIS FOR PLASTID EVOLUTION IN CHROMALVEOLATES(1).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

30 May 2018

Cloning and sequence analysis of cDNAs encoding the cytosolic precursors of subunits GapA and GapB of chloroplast glyceraldehyde-3-phosphate dehydrogenase from pea and spinach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

30 May 2018

The GapA/B gene duplication marks the origin of Streptophyta (charophytes and land plants).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

Evolutionary origin of cryptomonad microalgae: two novel chloroplast/cytosol-specific GAPDH genes as potential markers of ancestral endosymbiont and host cell components

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

Compartment-specific isoforms of TPI and GAPDH are imported into diatom mitochondria as a fusion protein: evidence in favor of a mitochondrial origin of the eukaryotic glycolytic pathway

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

An enigmatic GAPDH gene in the symbiotic dinoflagellate genus Symbiodinium and its related species (the order Suessiales): possible lateral gene transfer between two eukaryotic algae, dinoflagellate and euglenophyte

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

Re-examining alveolate evolution using multiple protein molecular phylogenies

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

Origins of plastids and glyceraldehyde-3-phosphate dehydrogenase genes in the green-colored dinoflagellate Lepidodinium chlorophorum.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

Phylogeny of nuclear-encoded plastid-targeted GAPDH gene supports separate origins for the peridinin- and the fucoxanthin derivative-containing plastids of dinoflagellates

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

Glyceraldehyde-3-phosphate dehydrogenase gene diversity in eubacteria and eukaryotes: evidence for intra- and inter-kingdom gene transfer

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

GAPDH gene diversity in spirochetes: a paradigm for genetic promiscuity

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

Plastid isoprenoid metabolism in the oyster parasite Perkinsus marinus connects dinoflagellates and malaria pathogens--new impetus for studying alveolates

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

The expression of a plant-type ferredoxin redox system provides molecular evidence for a plastid in the early dinoflagellate Perkinsus marinus

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

Eukaryotic origin of glyceraldehyde-3-phosphate dehydrogenase genes in Clostridium thermocellum and Clostridium cellulolyticum genomes and putative fates of the exogenous gene in the subsequent genome evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649427

29 November 2018

The Phylogeny of Glyceraldehyde-3-Phosphate Dehydrogenase Indicates Lateral Gene Transfer from Cryptomonads to Dinoflagellates

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

Plastid in human parasites

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0004737

21 January 2018

Is there a plastid in Perkinsus atlanticus (Phylum Perkinsozoa)?

1 reference

https://pubmed.ncbi.nlm.nih.gov/19270733

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary relationships among heterokont algae (the autotrophic stramenopiles) based on combined analyses of small and large subunit ribosomal RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/19270733

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1371/JOURNAL.PONE.0004737

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2009PLoSO...4.4737T

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release_6cydqguzcbacriocmvybdyaapy

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