(Q24535805)

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Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus

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Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus (English)

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1 reference

based on heuristic

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author name string

William Martin

1

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Tamas Rujan

2

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Erik Richly

3

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Andrea Hansen

4

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Sabine Cornelsen

5

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Thomas Lins

6

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Dario Leister

7

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Bettina Stoebe

8

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Masami Hasegawa

9

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David Penny

10

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language of work or name

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publication date

17 September 2002

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Proceedings of the National Academy of Sciences of the United States of America

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99

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19

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12246-51

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The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes

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24 March 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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24 March 2017

Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: the existence of genes possibly involved in chloroplast division

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

24 March 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

24 March 2017

Bacterial evolution

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24 March 2017

The neighbor-joining method: a new method for reconstructing phylogenetic trees

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

24 March 2017

The highly reduced genome of an enslaved algal nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

24 March 2017

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

24 March 2017

Lateral gene transfer and the nature of bacterial innovation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

24 March 2017

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

24 March 2017

Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC6803. II. Sequence Determination of the Entire Genome and Assignment of Potential Protein-coding Regions

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https://api.crossref.org/works/10.1073/PNAS.182432999

22 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

7 April 2017

An overview of the genome of Nostoc punctiforme, a multicellular, symbiotic cyanobacterium

3 references

https://api.crossref.org/works/10.1073/PNAS.182432999

22 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

https://pubmed.ncbi.nlm.nih.gov/12218172

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic classification and the universal tree

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

7 April 2017

The closest living relatives of land plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

7 April 2017

Caloramator viterbensis sp. nov., a novel thermophilic, glycerol-fermenting bacterium isolated from a hot spring in Italy

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

22 April 2017

Recovering evolutionary trees under a more realistic model of sequence evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

Protein import into cyanelles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

Molecular recognition in thylakoid structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

Microbial genes in the human genome: lateral transfer or gene loss?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

THE PLASTID DIVISION MACHINE.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

The structure and gene repertoire of an ancient red algal plastid genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

Phylogeny of 33 ribosomal and six other proteins encoded in an ancient gene cluster that is conserved across prokaryotic genomes: influence of excluding poorly alignable sites from analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

Early evolution of cytochrome bc complexes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

Complete nucleotide sequence of the Oenothera elata plastid chromosome, representing plastome I of the five distinguishable euoenothera plastomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

Membrane heredity and early chloroplast evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

Gene-cluster analysis in chloroplast genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

The plastid genome of the cryptophyte alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

Plastid evolution: origins, diversity, trends

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

Phylogenetic analysis in molecular evolutionary genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

27 September 2017

Molecular evidence for the early evolution of photosynthesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

30 May 2018

Chloroplast biogenesis: mixing the prokaryotic and the eukaryotic?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

30 May 2018

The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: a case study of functional redundancy in ancient pathways through endosymbiosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

30 May 2018

Multiple evolutionary origins of prochlorophytes within the cyanobacterial radiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

30 May 2018

Multiple evolutionary origins of prochlorophytes, the chlorophyllb-containing prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

30 May 2018

Tracing the Thread of Plastid Diversity through the Tapestry of Life.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=129430

19 June 2018

Chlorophyll b and phycobilins in the common ancestor of cyanobacteria and chloroplasts

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

21 January 2018

Gene Transfer from Organelles to the Nucleus: How Much, What Happens, and Why?

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

21 January 2018

Mitochondrial sequence migrated downstream to a nuclear V-ATPase B gene is transcribed but non-functional.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

21 January 2018

A prediction of the size and evolutionary origin of the proteome of chloroplasts of Arabidopsis

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

21 January 2018

Gene transfer to the nucleus and the evolution of chloroplasts

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

21 January 2018

Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

21 January 2018

Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

21 January 2018

The origin of red algae and the evolution of chloroplasts

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

21 January 2018

Towards a Reconstruction of Ancestral Genomes by Gene Cluster Alignment

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

21 January 2018

Evolution of Eucaryotic Cells

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

21 January 2018

A giant chlorophyll–protein complex induced by iron deficiency in cyanobacteria

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

21 January 2018

Substrate-binding lipoprotein of the cyanobacterium Synechococcus sp. strain PCC 7942 involved in the transport of nitrate and nitrite

1 reference

https://pubmed.ncbi.nlm.nih.gov/12218172

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria is revealed by homology-hit analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/12218172

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How many genes in Arabidopsis come from cyanobacteria? An estimate from 386 protein phylogenies

1 reference

https://pubmed.ncbi.nlm.nih.gov/12218172

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.182432999

7 January 2021

based on heuristic

inferred from DOI database lookup

Bacterial evolution

1 reference

18 October 2022

https://opencitations.net/index/coci/api/v1/citations/10.1128/MR.51.2.221-271.1987

Identifiers

10.1073/PNAS.182432999

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2002PNAS...9912246M

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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