(Q24633890)

3

0 references

Steven Salzberg

8

0 references

Lior Pachter

10

Lior Pachter

0 references

Harold Pimentel

7

Harold Pimentel

0 references

John L. Rinn

John L Rinn

9

0 references

Cole Trapnell

1

Cole Trapnell

0 references

author name string

Adam Roberts

2

0 references

Geo Pertea

4

0 references

Daehwan Kim

5

0 references

David R Kelley

maintained by WikiProject

6

0 references

language of work or name

English

0 references

publication date

March 2012

0 references

published in

Nature Protocols

0 references

volume

7

0 references

issue

3

0 references

page(s)

562-78

0 references

WikiProject Software

0 references

cites work

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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

7 April 2017

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Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease

7 April 2017

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Differential expression analysis for sequence count data

7 April 2017

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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

7 April 2017

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

7 April 2017

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Biases in Illumina transcriptome sequencing caused by random hexamer priming

7 April 2017

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TopHat: discovering splice junctions with RNA-Seq

7 April 2017

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 April 2017

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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

7 April 2017

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

7 April 2017

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The transcriptional landscape of the yeast genome defined by RNA sequencing

7 April 2017

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 April 2017

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

7 April 2017

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The Sequence Alignment/Map format and SAMtools

7 April 2017

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Stem cell transcriptome profiling via massive-scale mRNA sequencing

7 April 2017

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The impact of next-generation sequencing technology on genetics

7 April 2017

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Sequence identification of 2,375 human brain genes

7 April 2017

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

7 April 2017

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7 April 2017

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Genome-wide mapping of in vivo protein-DNA interactions

7 April 2017

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The developmental transcriptome of Drosophila melanogaster

7 April 2017

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Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

7 April 2017

1 reference

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Computational methods for transcriptome annotation and quantification using RNA-seq

7 April 2017

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Estimation of alternative splicing isoform frequencies from RNA-Seq data

27 September 2017

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Improving RNA-Seq expression estimates by correcting for fragment bias

27 September 2017

1 reference

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Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.).

27 September 2017

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Analysis and design of RNA sequencing experiments for identifying isoform regulation

27 September 2017

1 reference

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27 September 2017

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Alternative expression analysis by RNA sequencing

27 September 2017

1 reference

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MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.

27 September 2017

1 reference

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Comprehensive comparative analysis of strand-specific RNA sequencing methods

27 September 2017

1 reference

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Cloud computing and the DNA data race

27 September 2017

1 reference

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Modeling non-uniformity in short-read rates in RNA-Seq data

27 September 2017

1 reference

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Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

27 September 2017

1 reference

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Fast and SNP-tolerant detection of complex variants and splicing in short reads

27 September 2017

1 reference

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DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

27 September 2017

1 reference

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Statistical inferences for isoform expression in RNA-Seq

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334321

A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334321

Sequencing technology does not eliminate biological variability

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334321

RNA-Seq gene expression estimation with read mapping uncertainty

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334321

Identification of novel transcripts in annotated genomes using RNA-Seq

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334321

28 November 2018

Identifiers

DOI

10.1038/NPROT.2012.016

1 reference

Dimensions Publication ID

1030124536

0 references

1 reference

1 reference

PubMed publication ID

22383036

1 reference