(Q34306235)

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Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications

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Europe PubMed Central

PubMed publication ID

1 August 2017

Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications (English)

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

gene duplication

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inferred from title

3

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Europe PubMed Central

PubMed publication ID

1 August 2017

2

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Eric Peatman

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author name string

Jianguo Lu

1

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Joshua Lewis

4

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Europe PubMed Central

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1 August 2017

Zhanjiang Liu

5

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Europe PubMed Central

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1 August 2017

language of work or name

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publication date

15 June 2012

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Europe PubMed Central

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1 August 2017

language of work

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Europe PubMed Central

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1 August 2017

13

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Europe PubMed Central

PubMed publication ID

1 August 2017

246

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Gene conversion and evolution of gene families: an overview

1 reference

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6 July 2018

A computer simulator for assessing different challenges and strategies of de novo sequence assembly

1 reference

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6 July 2018

Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis.

1 reference

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6 July 2018

Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication

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6 July 2018

High spontaneous rate of gene duplication in Caenorhabditis elegans

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6 July 2018

Ancient vertebrate conserved noncoding elements have been evolving rapidly in teleost fishes

1 reference

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6 July 2018

Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis.

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6 July 2018

Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: gene content estimation for dinoflagellate genomes

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6 July 2018

Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates.

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6 July 2018

A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Rapidly evolving fish genomes and teleost diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Tandemly arrayed genes in vertebrate genomes

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6 July 2018

A role for gene duplication and natural variation of gene expression in the evolution of metabolism

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Evolution of pigment synthesis pathways by gene and genome duplication in fish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

A roadmap of tandemly arrayed genes in the genomes of human, mouse, and rat.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Alternative splicing and RNA selection pressure--evolutionary consequences for eukaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Role of positive selection in the retention of duplicate genes in mammalian genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Two rounds of whole genome duplication in the ancestral vertebrate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

From 2R to 3R: evidence for a fish-specific genome duplication (FSGD).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Coelacanth genome sequence reveals the evolutionary history of vertebrate genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Gene duplication: the genomic trade in spare parts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Structural dynamics of eukaryotic chromosome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Functional divergence of two zebrafish midkine growth factors following fish-specific gene duplication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

The temporal distribution of gene duplication events in a set of highly conserved human gene families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Extensive genomic duplication during early chordate evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

The evolutionary fate and consequences of duplicate genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Preservation of duplicate genes by complementary, degenerative mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Zebrafish hox clusters and vertebrate genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

PAML: a program package for phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

6 July 2018

Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

Fish specific duplication of Dmrt2: characterization of zebrafish Dmrt2b

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

Whole genome duplication: challenges and considerations associated with sequence orthology assignment in Salmoninae

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

The gain and loss of genes during 600 million years of vertebrate evolution

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https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

Alternative splicing in teleost fish genomes: same-species and cross-species analysis and comparisons

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https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

Evolutionary rates of duplicate genes in fish and mammals.

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21 January 2018

Primate evolution of an olfactory receptor cluster: diversification by gene conversion and recent emergence of pseudogenes

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-246

21 January 2018

The "fish-specific" Hox cluster duplication is coincident with the origin of teleosts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

28 October 2018

Gene duplications and the origins of vertebrate development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3464592

28 October 2018

Vertebrate genome evolution and the zebrafish gene map

1 reference

https://pubmed.ncbi.nlm.nih.gov/22702965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Timing and effects of template number for gene conversion of major histocompatibility complex genes in the mouse

1 reference

https://pubmed.ncbi.nlm.nih.gov/22702965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CC chemokines in zebrafish: evidence for extensive intrachromosomal gene duplications

1 reference

https://pubmed.ncbi.nlm.nih.gov/22702965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Olfactory receptor gene family evolution in stickleback and medaka fishes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22702965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Co-duplication of olfactory receptor and MHC class I genes in the mouse major histocompatibility complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/22702965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Shotgun sequence assembly and recent segmental duplications within the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/22702965

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-13-246

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Europe PubMed Central

PubMed publication ID

1 August 2017

release_uq4s5nbmezasro2asuy3mksppm

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24 November 2022

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mapped directly with Wikidata item

PMC publication ID

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Europe PubMed Central

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1 August 2017

PubMed publication ID

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Europe PubMed Central

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1 August 2017

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