Graph rewriting and strategies for modeling biochemical networks
O Andrei, H Kirchner - … on Symbolic and Numeric Algorithms for …, 2007 - ieeexplore.ieee.org
O Andrei, H Kirchner
Ninth International Symposium on Symbolic and Numeric Algorithms …, 2007•ieeexplore.ieee.orgIn this paper, we present a rewriting framework for modeling molecular complexes,
biochemical reaction rules, and generation of biochemical networks based on the
representation of molecular complexes as a particular type of multi-graphs with ports called
molecular graphs. The advantage of this approach is to obtain for free a rewriting calculus
which allows defining at the same level transformation rules and strategies for modeling rule
selection and application, in order to prototype network generation.
biochemical reaction rules, and generation of biochemical networks based on the
representation of molecular complexes as a particular type of multi-graphs with ports called
molecular graphs. The advantage of this approach is to obtain for free a rewriting calculus
which allows defining at the same level transformation rules and strategies for modeling rule
selection and application, in order to prototype network generation.
In this paper, we present a rewriting framework for modeling molecular complexes, biochemical reaction rules, and generation of biochemical networks based on the representation of molecular complexes as a particular type of multi- graphs with ports called molecular graphs. The advantage of this approach is to obtain for free a rewriting calculus which allows defining at the same level transformation rules and strategies for modeling rule selection and application, in order to prototype network generation.
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