Tobacco mosaic virus(TMV) infects several crops of economic importance (e.g., tomato) and remains... more Tobacco mosaic virus(TMV) infects several crops of economic importance (e.g., tomato) and remains as one of the major concerns to the farmers. TMV enters the host cell and produces the capping enzyme RNA polymerase. The viral genome replicates further to produce multiple mRNAs which encodes several proteins, including the coat protein and an RNA-dependent RNA polymerase (RdRp), as well as the movement protein. TMV replicase domain was chosen for the virtual screening studies against small molecules derived from ligand databases such as PubChem and ChemBank. Catalytic sites of the RdRp domain were identified and subjected to docking analysis with screened ligands derived from virtual screening LigandFit. Small molecules that interact with the target molecule at the catalytic domain region amino acids, GDD, were chosen as the best inhibitors for controlling the TMV replicase activity.
With 1 figure and 3 tablesWith 1 figure and 3 tablesAbstractEvolving high yielding rice genotypes... more With 1 figure and 3 tablesWith 1 figure and 3 tablesAbstractEvolving high yielding rice genotypes with durable resistance to bacterial leaf blight (BLB) is pertinent considering the extensive damage caused by the disease in most of the rice growing regions. Two high yielding BLB susceptible indica rice cultivars, ‘ADT43’ and ‘ASD16’ popular among farmers and consumers across South India have been introgressed with three BLB resistance genes xa5, xa13 and Xa21 from isoline IRBB60 using functional markers. The F2 populations of 500 plants from ADT43 × IRBB60 and 806 plants from ASD16 × IRBB60 crosses were screened for the presence of all the three resistance genes. Thirty genotypes with three genes in homozygous and 55 genotypes with two genes in homozygous and one gene in heterozygous condition were identified. These pyramided genotypes with two or three resistance genes exhibited high levels of resistance against two predominant Xanthomonas oryzae isolates of South India. Among the 30 pyramided genotypes (xa5 + xa13 + Xa21), 12 were found to be significantly high yielding with desirable agronomic characteristics and the selection efficiency of the present markers was hundred percent.Evolving high yielding rice genotypes with durable resistance to bacterial leaf blight (BLB) is pertinent considering the extensive damage caused by the disease in most of the rice growing regions. Two high yielding BLB susceptible indica rice cultivars, ‘ADT43’ and ‘ASD16’ popular among farmers and consumers across South India have been introgressed with three BLB resistance genes xa5, xa13 and Xa21 from isoline IRBB60 using functional markers. The F2 populations of 500 plants from ADT43 × IRBB60 and 806 plants from ASD16 × IRBB60 crosses were screened for the presence of all the three resistance genes. Thirty genotypes with three genes in homozygous and 55 genotypes with two genes in homozygous and one gene in heterozygous condition were identified. These pyramided genotypes with two or three resistance genes exhibited high levels of resistance against two predominant Xanthomonas oryzae isolates of South India. Among the 30 pyramided genotypes (xa5 + xa13 + Xa21), 12 were found to be significantly high yielding with desirable agronomic characteristics and the selection efficiency of the present markers was hundred percent.
We report on generation of marker-free (‘clean DNA’) transgenic rice (Oryza sativa), carrying min... more We report on generation of marker-free (‘clean DNA’) transgenic rice (Oryza sativa), carrying minimal gene-expression-cassettes of the genes of interest, and evaluation of its resistance to yellow stem borerScirpophaga incertulas (Lepidoptera: Pyralidae). The transgenicindica rice harbours a translational fusion of 2 differentBacillus thuringiensis (Bt) genes, namelycry1B-1Aa, driven by the green-tissue-specific phosphoenol pyruvate carboxylase (PEPC) promoter. Mature seed-derived calli of an eliteindica rice cultivar Pusa Basmati-1 were co-bombarded with gene-expression-cassettes (clean DNA fragments) of the Bt gene and the markerhpt gene, to generate marker-free transgenic rice plants. The clean DNA fragments for bombardment were obtained by restriction digestion and gel extraction. Through biolistic transformation, 67 independent transformants were generated. Transformation frequency reached 3.3%, and 81% of the transgenic plants were co-transformants. Stable integration of the Bt gene was confirmed, and the insert copy number was determined by Southern analysis. Western analysis and ELISA revealed a high level of Bt protein expression in transgenic plants. Progeny analysis confirmed stable inheritance of the Bt gene according to the Mendelian (3∶1) ratio. Insect bioassays revealed complete protection of transgenic plants from yellow stem borer infestation. PCR analysis of T2 progeny plants resulted in the recovery of up to 4% marker-free transgenic rice plants.
Tobacco mosaic virus(TMV) infects several crops of economic importance (e.g., tomato) and remains... more Tobacco mosaic virus(TMV) infects several crops of economic importance (e.g., tomato) and remains as one of the major concerns to the farmers. TMV enters the host cell and produces the capping enzyme RNA polymerase. The viral genome replicates further to produce multiple mRNAs which encodes several proteins, including the coat protein and an RNA-dependent RNA polymerase (RdRp), as well as the movement protein. TMV replicase domain was chosen for the virtual screening studies against small molecules derived from ligand databases such as PubChem and ChemBank. Catalytic sites of the RdRp domain were identified and subjected to docking analysis with screened ligands derived from virtual screening LigandFit. Small molecules that interact with the target molecule at the catalytic domain region amino acids, GDD, were chosen as the best inhibitors for controlling the TMV replicase activity.
With 1 figure and 3 tablesWith 1 figure and 3 tablesAbstractEvolving high yielding rice genotypes... more With 1 figure and 3 tablesWith 1 figure and 3 tablesAbstractEvolving high yielding rice genotypes with durable resistance to bacterial leaf blight (BLB) is pertinent considering the extensive damage caused by the disease in most of the rice growing regions. Two high yielding BLB susceptible indica rice cultivars, ‘ADT43’ and ‘ASD16’ popular among farmers and consumers across South India have been introgressed with three BLB resistance genes xa5, xa13 and Xa21 from isoline IRBB60 using functional markers. The F2 populations of 500 plants from ADT43 × IRBB60 and 806 plants from ASD16 × IRBB60 crosses were screened for the presence of all the three resistance genes. Thirty genotypes with three genes in homozygous and 55 genotypes with two genes in homozygous and one gene in heterozygous condition were identified. These pyramided genotypes with two or three resistance genes exhibited high levels of resistance against two predominant Xanthomonas oryzae isolates of South India. Among the 30 pyramided genotypes (xa5 + xa13 + Xa21), 12 were found to be significantly high yielding with desirable agronomic characteristics and the selection efficiency of the present markers was hundred percent.Evolving high yielding rice genotypes with durable resistance to bacterial leaf blight (BLB) is pertinent considering the extensive damage caused by the disease in most of the rice growing regions. Two high yielding BLB susceptible indica rice cultivars, ‘ADT43’ and ‘ASD16’ popular among farmers and consumers across South India have been introgressed with three BLB resistance genes xa5, xa13 and Xa21 from isoline IRBB60 using functional markers. The F2 populations of 500 plants from ADT43 × IRBB60 and 806 plants from ASD16 × IRBB60 crosses were screened for the presence of all the three resistance genes. Thirty genotypes with three genes in homozygous and 55 genotypes with two genes in homozygous and one gene in heterozygous condition were identified. These pyramided genotypes with two or three resistance genes exhibited high levels of resistance against two predominant Xanthomonas oryzae isolates of South India. Among the 30 pyramided genotypes (xa5 + xa13 + Xa21), 12 were found to be significantly high yielding with desirable agronomic characteristics and the selection efficiency of the present markers was hundred percent.
We report on generation of marker-free (‘clean DNA’) transgenic rice (Oryza sativa), carrying min... more We report on generation of marker-free (‘clean DNA’) transgenic rice (Oryza sativa), carrying minimal gene-expression-cassettes of the genes of interest, and evaluation of its resistance to yellow stem borerScirpophaga incertulas (Lepidoptera: Pyralidae). The transgenicindica rice harbours a translational fusion of 2 differentBacillus thuringiensis (Bt) genes, namelycry1B-1Aa, driven by the green-tissue-specific phosphoenol pyruvate carboxylase (PEPC) promoter. Mature seed-derived calli of an eliteindica rice cultivar Pusa Basmati-1 were co-bombarded with gene-expression-cassettes (clean DNA fragments) of the Bt gene and the markerhpt gene, to generate marker-free transgenic rice plants. The clean DNA fragments for bombardment were obtained by restriction digestion and gel extraction. Through biolistic transformation, 67 independent transformants were generated. Transformation frequency reached 3.3%, and 81% of the transgenic plants were co-transformants. Stable integration of the Bt gene was confirmed, and the insert copy number was determined by Southern analysis. Western analysis and ELISA revealed a high level of Bt protein expression in transgenic plants. Progeny analysis confirmed stable inheritance of the Bt gene according to the Mendelian (3∶1) ratio. Insect bioassays revealed complete protection of transgenic plants from yellow stem borer infestation. PCR analysis of T2 progeny plants resulted in the recovery of up to 4% marker-free transgenic rice plants.
Uploads
Papers by Arul Loganathan