Absorption difference profiles were obtained at wavelengths from 640 to 700 nm with 1-2-ps resolu... more Absorption difference profiles were obtained at wavelengths from 640 to 700 nm with 1-2-ps resolution in a study of primary photoprocesses in the Pr-->Pfr transformation in native oat phytochrome. These experiments were performed using low-intensity laser pulses at high repetition rate; fast sample recycling ensured that essentially all phytochrome species were excited from the Pr ground state. The Pr*-stimulated emission decay at wavelengths > 670 nm exhibits major components with lifetimes of approximately 16 and 50-60 ps. Formation of the asymptotic 695-nm lumi-R absorption spectrum rapidly follows stimulated emission decay. Photoexcitation of one or both of the lumi-R intermediates instantaneously recreates fluorescing Pr* phytochrome, which is spectroscopically and kinetically indistinguishable from that generated by direct illumination of ground-state Pr. This is consistent with assignment of lumi-R as a species in which the chromophore has isomerized from the Z,Z,Z to the Z,Z,E conformation. Anisotropy studies indicate that the orientations of the Pr and lumi-R absorption transition moments are nearly parallel, since little anisotropy decay occurs during the 500-ps time window of these experiments.
The acceptor quinones, QA and QB, of bacterial reaction centers (RCs) undergo light-induced reduc... more The acceptor quinones, QA and QB, of bacterial reaction centers (RCs) undergo light-induced reduction in series to accumulate two reducing equivalents from the one-electron turnover of the primary photoevents. After two RC turnovers, accompanied by binding of two protons, a molecule of quinol (QBH2) is released from the QB site, which is then refilled by an oxidized quinone.
Biosensors exploit the theoretical and instrumental approaches of analytical chemistry and the un... more Biosensors exploit the theoretical and instrumental approaches of analytical chemistry and the unique properties of biological molecules. They utilize the intermolecular interactions and specificity found in systems such as hormone-receptor, antigenantibody, pathogen-host and substrate-enzyme. Manipulation of the structural and energetic factors that guide formation of these macromolecular complexes may provide a rational basis for the development of new sensor technology. To this end we have investigated myoglobin thin films for their ability to bind ligands. FTIR spectroscopy has been chosen as the transduction methods and has been shown to discriminate between several analytes. Abbreviations: DCDI, N,N’-Dicyclohexylcarbodiimide; DPPE, 1,2-Dipalmitoyl-sn-Glycero-3-Phosphoethanolamine; ECDI, 1Ethyl-3-(3-Dimethylaminopropyl)Carbodiimide; ATR, Attenuated Total Reflectance; IRE, Internal Reflection Element. *To whom correspondence should be addressed. INTRODUCTION Biosensors Biosensor...
The role of the protein environment in determining the redox midpoint potential (E(m)) of Q(A), t... more The role of the protein environment in determining the redox midpoint potential (E(m)) of Q(A), the primary quinone of bacterial reaction centers, was investigated by mutation of isoleucine at position 265 of the M subunit in Rhodobacter sphaeroides. Isoleucine was changed to threonine, serine, and valine, yielding mutants M265IT, M265IS, and M265IV, respectively. All three mutants, with smaller residues replacing isoleucine, exhibited decreased binding affinities of the Q(A) site for various quinone analogues, consistent with an enlargement or loosening of the headgroup binding domain and a decrease in the van der Waals contact for small quinones. In all other respects, M265IV was like the wild type, but the polar mutants, M265IT and M265IS, had unexpectedly dramatic decreases in the redox midpoint potential of Q(A), resulting in faster rates of P(+)Q(A)(-) charge recombination. For both anthraquinone and native ubiquinone, the in situ E(m) of Q(A) was estimated to be approximately 100 and 85 mV lower in M265IT and M265IS, respectively. The effect on E(m)(Q(A)) indicates destabilization of the semiquinone or stabilization of the quinone. This is suggested to arise from either (i) electrostatic interaction between the partial charges or dipole of the residue hydroxyl group and the charge distribution of quinone and semiquinone states with particular influence near the C4 carbonyl group or (ii) from hydrogen bonding interactions between the hydroxyl oxygen and the N(delta)H of histidine M219, causing a weakening of the hydrogen bond to the C4 carbonyl. The rate of the first electron transfer (k(AB)(()(1)())) in the polar mutants was the same as in the wild type at low pH but decelerated at higher pH with altered pH dependence. The rate of the second electron transfer (k(AB)(()(2)())) was 3-4-fold greater than in the wild type over the whole pH range from 4 to 11, consistent with a larger driving force for electron transfer derived from the lower E(m) of Q(A).
Phytochromes mediate a variety of developmental and growth processes involved in the photomorphog... more Phytochromes mediate a variety of developmental and growth processes involved in the photomorphogenesis of plants. In this article, we review the current understanding of the structure and function of the photoreceptor, discuss some very preliminary results, and offer speculations and even conjectures that may elicit future studies into the molecular mechanisms of the phytochrome-mediated light signal transduction in plants.
Recently, Mummert et al. [Nature 363, 644-648 (1993)] isolated a proposed TCP1-related chaperone.... more Recently, Mummert et al. [Nature 363, 644-648 (1993)] isolated a proposed TCP1-related chaperone. Here we report several findings concerning the protein which they sequenced. Two similar N-terminal sequences were obtained from this abundant 60-kDa protein. Internal sequences were also acquired by protease digestion. Initially it was believed the protein was able to completely inhibit citrate synthase aggregation, but later purifications demonstrated that the 60-kDa polypeptide lacked both chaperone activity and the previously reported kinase activity [Grimm et al., Planta 178, 199-206 (1989)]. It is now our belief that this protein is neither a chaperone nor a kinase.
ABSTRACT The next generation High Temperature Low Sag Polymer Core Composite Conductors can exper... more ABSTRACT The next generation High Temperature Low Sag Polymer Core Composite Conductors can experience harsh in-service environments including high temperature and highly concentrated ozone. In some extreme cases, it is possible that the conductors will experience temperatures of up to 180 °C and ozone concentrations as high as 1% (10,000 ppm). Therefore, the goal of this work was to understand the degradation mechanisms in a high temperature epoxy, which could be used in the conductors at temperatures as high as 140 °C in the presence of 1% ozone. Then, the combined aging data for the epoxy were compared to the aging results from room temperature aging in 1% ozone and aging in air at 140 and 180 °C. In addition, important but limited aging testing was also performed on a set of PCCC rods to verify some of the observations from the neat resin experiments. It was determined that the mass loss, volumetric shrinkage, and flexural strength reductions of the epoxy aged at 140 °C were driven almost entirely by temperature and that the effect of 1% ozone at that temperature can be thought of as insignificant for aging times up to 90 days. The composite rods displayed postcuring at 140 °C and were also unaffected by the presence of ozone at aging time lengths of 90 days. Up to this time aging the polymer and composite specimens in atmospheric 180 °C resulted in the most drastic changes in both physical and mechanical properties, except viscoelasticity where the polymer specimens aged at 140 °C with 1% ozone showed the greatest increase in the storage modulus. The least amount of degradation to the materials was found to occur after aging at room temperature in 1% ozone.
Absorption difference profiles were obtained at wavelengths from 640 to 700 nm with 1-2-ps resolu... more Absorption difference profiles were obtained at wavelengths from 640 to 700 nm with 1-2-ps resolution in a study of primary photoprocesses in the Pr-->Pfr transformation in native oat phytochrome. These experiments were performed using low-intensity laser pulses at high repetition rate; fast sample recycling ensured that essentially all phytochrome species were excited from the Pr ground state. The Pr*-stimulated emission decay at wavelengths > 670 nm exhibits major components with lifetimes of approximately 16 and 50-60 ps. Formation of the asymptotic 695-nm lumi-R absorption spectrum rapidly follows stimulated emission decay. Photoexcitation of one or both of the lumi-R intermediates instantaneously recreates fluorescing Pr* phytochrome, which is spectroscopically and kinetically indistinguishable from that generated by direct illumination of ground-state Pr. This is consistent with assignment of lumi-R as a species in which the chromophore has isomerized from the Z,Z,Z to the Z,Z,E conformation. Anisotropy studies indicate that the orientations of the Pr and lumi-R absorption transition moments are nearly parallel, since little anisotropy decay occurs during the 500-ps time window of these experiments.
The acceptor quinones, QA and QB, of bacterial reaction centers (RCs) undergo light-induced reduc... more The acceptor quinones, QA and QB, of bacterial reaction centers (RCs) undergo light-induced reduction in series to accumulate two reducing equivalents from the one-electron turnover of the primary photoevents. After two RC turnovers, accompanied by binding of two protons, a molecule of quinol (QBH2) is released from the QB site, which is then refilled by an oxidized quinone.
Biosensors exploit the theoretical and instrumental approaches of analytical chemistry and the un... more Biosensors exploit the theoretical and instrumental approaches of analytical chemistry and the unique properties of biological molecules. They utilize the intermolecular interactions and specificity found in systems such as hormone-receptor, antigenantibody, pathogen-host and substrate-enzyme. Manipulation of the structural and energetic factors that guide formation of these macromolecular complexes may provide a rational basis for the development of new sensor technology. To this end we have investigated myoglobin thin films for their ability to bind ligands. FTIR spectroscopy has been chosen as the transduction methods and has been shown to discriminate between several analytes. Abbreviations: DCDI, N,N’-Dicyclohexylcarbodiimide; DPPE, 1,2-Dipalmitoyl-sn-Glycero-3-Phosphoethanolamine; ECDI, 1Ethyl-3-(3-Dimethylaminopropyl)Carbodiimide; ATR, Attenuated Total Reflectance; IRE, Internal Reflection Element. *To whom correspondence should be addressed. INTRODUCTION Biosensors Biosensor...
The role of the protein environment in determining the redox midpoint potential (E(m)) of Q(A), t... more The role of the protein environment in determining the redox midpoint potential (E(m)) of Q(A), the primary quinone of bacterial reaction centers, was investigated by mutation of isoleucine at position 265 of the M subunit in Rhodobacter sphaeroides. Isoleucine was changed to threonine, serine, and valine, yielding mutants M265IT, M265IS, and M265IV, respectively. All three mutants, with smaller residues replacing isoleucine, exhibited decreased binding affinities of the Q(A) site for various quinone analogues, consistent with an enlargement or loosening of the headgroup binding domain and a decrease in the van der Waals contact for small quinones. In all other respects, M265IV was like the wild type, but the polar mutants, M265IT and M265IS, had unexpectedly dramatic decreases in the redox midpoint potential of Q(A), resulting in faster rates of P(+)Q(A)(-) charge recombination. For both anthraquinone and native ubiquinone, the in situ E(m) of Q(A) was estimated to be approximately 100 and 85 mV lower in M265IT and M265IS, respectively. The effect on E(m)(Q(A)) indicates destabilization of the semiquinone or stabilization of the quinone. This is suggested to arise from either (i) electrostatic interaction between the partial charges or dipole of the residue hydroxyl group and the charge distribution of quinone and semiquinone states with particular influence near the C4 carbonyl group or (ii) from hydrogen bonding interactions between the hydroxyl oxygen and the N(delta)H of histidine M219, causing a weakening of the hydrogen bond to the C4 carbonyl. The rate of the first electron transfer (k(AB)(()(1)())) in the polar mutants was the same as in the wild type at low pH but decelerated at higher pH with altered pH dependence. The rate of the second electron transfer (k(AB)(()(2)())) was 3-4-fold greater than in the wild type over the whole pH range from 4 to 11, consistent with a larger driving force for electron transfer derived from the lower E(m) of Q(A).
Phytochromes mediate a variety of developmental and growth processes involved in the photomorphog... more Phytochromes mediate a variety of developmental and growth processes involved in the photomorphogenesis of plants. In this article, we review the current understanding of the structure and function of the photoreceptor, discuss some very preliminary results, and offer speculations and even conjectures that may elicit future studies into the molecular mechanisms of the phytochrome-mediated light signal transduction in plants.
Recently, Mummert et al. [Nature 363, 644-648 (1993)] isolated a proposed TCP1-related chaperone.... more Recently, Mummert et al. [Nature 363, 644-648 (1993)] isolated a proposed TCP1-related chaperone. Here we report several findings concerning the protein which they sequenced. Two similar N-terminal sequences were obtained from this abundant 60-kDa protein. Internal sequences were also acquired by protease digestion. Initially it was believed the protein was able to completely inhibit citrate synthase aggregation, but later purifications demonstrated that the 60-kDa polypeptide lacked both chaperone activity and the previously reported kinase activity [Grimm et al., Planta 178, 199-206 (1989)]. It is now our belief that this protein is neither a chaperone nor a kinase.
ABSTRACT The next generation High Temperature Low Sag Polymer Core Composite Conductors can exper... more ABSTRACT The next generation High Temperature Low Sag Polymer Core Composite Conductors can experience harsh in-service environments including high temperature and highly concentrated ozone. In some extreme cases, it is possible that the conductors will experience temperatures of up to 180 °C and ozone concentrations as high as 1% (10,000 ppm). Therefore, the goal of this work was to understand the degradation mechanisms in a high temperature epoxy, which could be used in the conductors at temperatures as high as 140 °C in the presence of 1% ozone. Then, the combined aging data for the epoxy were compared to the aging results from room temperature aging in 1% ozone and aging in air at 140 and 180 °C. In addition, important but limited aging testing was also performed on a set of PCCC rods to verify some of the observations from the neat resin experiments. It was determined that the mass loss, volumetric shrinkage, and flexural strength reductions of the epoxy aged at 140 °C were driven almost entirely by temperature and that the effect of 1% ozone at that temperature can be thought of as insignificant for aging times up to 90 days. The composite rods displayed postcuring at 140 °C and were also unaffected by the presence of ozone at aging time lengths of 90 days. Up to this time aging the polymer and composite specimens in atmospheric 180 °C resulted in the most drastic changes in both physical and mechanical properties, except viscoelasticity where the polymer specimens aged at 140 °C with 1% ozone showed the greatest increase in the storage modulus. The least amount of degradation to the materials was found to occur after aging at room temperature in 1% ozone.
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