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A Whole-Genome Scan for Stroke or Myocardial Infarction in Family Blood Pressure Program Families

Stroke, 2008
Background and Purpose— Atherothrombotic diseases, including stroke and myocardial infarction, share a common pathogenesis. Chromosomal regions have been linked to atherothrombotic diseases in family studies, and association studies have identified candidate gene polymorphisms that affect the risk of stroke and/or myocardial infarction. Using data from the Family Blood Pressure Program, we tested for chromosomal regions linked to the composite phenotype of stroke or myocardial infarction in a large set of hypertensive families. Methods— Nonparametric linkage analysis was implemented in MERLIN, which tests for excess allele-sharing among affected siblings. Empirical distributions based on gene dropping simulations were constructed for each test statistic, and the −log 10 of the associated probability values were compared. Results— Analyses were based on 9607 individuals in 226 black, 395 Hispanic, and 207 white families; 106 families had multiple affected individuals. Several regions......Read more
A Whole-Genome Scan for Stroke or Myocardial Infarction in Family Blood Pressure Program Families Richard Sherva, PhD; Michael B. Miller, PhD; James S. Pankow, PhD; Steven C. Hunt, PhD; Eric Boerwinkle, PhD; Thomas H. Mosley, PhD; Alan B. Weder, MD; J. David Curb, MD; Amy Luke, MD; Alanna C. Morrison, PhD; Myriam Fornage, PhD; Donna K. Arnett, PhD Background and Purpose—Atherothrombotic diseases, including stroke and myocardial infarction, share a common pathogenesis. Chromosomal regions have been linked to atherothrombotic diseases in family studies, and association studies have identified candidate gene polymorphisms that affect the risk of stroke and/or myocardial infarction. Using data from the Family Blood Pressure Program, we tested for chromosomal regions linked to the composite phenotype of stroke or myocardial infarction in a large set of hypertensive families. Methods—Nonparametric linkage analysis was implemented in MERLIN, which tests for excess allele-sharing among affected siblings. Empirical distributions based on gene dropping simulations were constructed for each test statistic, and the -log 10 of the associated probability values were compared. Results—Analyses were based on 9607 individuals in 226 black, 395 Hispanic, and 207 white families; 106 families had multiple affected individuals. Several regions showed linkage to stroke or myocardial infarction, most significantly in Hispanics on chromosomes 2p21 (-log 10 P=3.0) and 7q21.1 (-log 10 P=2.8), 9q32 in blacks and Hispanics (-log 10 P=3.0), 11p13 in blacks (-log 10 P=2.1), and 12q24.33 in whites (-log 10 P=3.0). Conclusions—There is statistically significant evidence for loci affecting stroke or myocardial infarction on chromosomes 2, 9, and 12. (Stroke. 2008;39:1115-1120.) Key Words: cerebrovascular accident epidemiology linkage (genetics) LOD score myocardial infarction S troke and myocardial infarction (MI) are common man- ifestations of atherothrombotic disease and together are the leading cause of death and disability in the United States. There are approximately 865 000 new and recurrent MIs in the United States each year and 750 000 new and recurrent cases of stroke. 1 Ischemic blockage accounts for approximately 80% of stroke events; approximately 10% are due to intracere- bral hemorrhage; 10% result from subarachnoid hemorrhage. 2 Ischemic stroke and MI are similar phenotypes despite occurring in different locations. They share several patho- physiological mechanisms (eg, inflammation, atherosclerosis, plaque rupture, thrombosis, ischemic blockage) and risk factors (hypertension, smoking, dyslipidemia, no or high alcohol consumption, inflammation, homocystinemia, hyper- coagulable states, diabetes). 3,4 Both phenotypes have a sub- stantial familial component. Monozygotic twins are 1.6 times more likely to be concordant for stroke than dizygotic twins; several studies show a small, significant increase in stroke risk in those with a family history of stroke. 5 MIs are 2.48-fold more common in individuals with a sibling who has had an MI compared with those without. 6 The heritability of arterial and venous thrombosis is estimated at 60% using liability threshold models. 7 Past genome scans for stroke and MI have identified potential regions and genes of interest in various populations. 8 –15 Combining stroke and MI allows detection of genes com- mon to the pathogenesis of both and may increase power for detection of susceptibility loci. Therefore, we performed a genome scan for stroke or MI in black, Hispanic, and white families enrolled in the Family Blood Pressure Program (FBPP), the largest sample of families with data available for linkage analysis on stroke and MI. A combination of liability threshold and affected sibpair (ASP) models was used to detect linked regions. Received April 4, 2007; final revision received July 2, 2007; accepted July 20, 2007. From the Division of Epidemiology and Community Health (R.S., M.B.M., J.S.P.), University of Minnesota, Minneapolis, Minn; the Cardiovascular Genetics Division (S.C.H.), University of Utah School of Medicine, Salt Lake City, Utah; the Human Genetics Center (E.B.) and the Institute of Molecular Medicine (E.B.), University of Texas–Houston Health Science Center, Houston, Texas; the Department of Medicine (T.H.M.), University of Mississippi Medical Center, Jackson, Miss; the Division of Hypertension (A.B.W.), University of Michigan School of Medicine, Ann Arbor, Mich; the Pacific Health Research Institute (J.D.C.), Honolulu, Hawaii; the Department of Preventative Medicine and Epidemiology (A.L.), Loyola University Strich School of Medicine, Maywood, Ill; the Human Genetics Center (A.C.M.), University of Texas at Houston, Houston, Texas; the Institute of Molecular Medicine for the Prevention of Human Diseases (M.F.), University of Texas Health Science Center, Houston, Texas; and the Department of Epidemiology (D.K.A.), University of Alabama Birmingham, Ala. Correspondence to Donna K. Arnett, PhD, MSPH, RPHB 220E, 1530 3rd Avenue South, Birmingham AL 35294-0022. E-mail arnett@uab.edu © 2008 American Heart Association, Inc. Stroke is available at http://stroke.ahajournals.org DOI: 10.1161/STROKEAHA.107.490433 1115 Downloaded from http://ahajournals.org by on March 24, 2022
Materials and Methods Recruitment and Participants FBPP data were obtained by pooling data from 4 National Heart Lung and Blood Institute hypertension genetics studies, The Genetic Epidemiology Network (GenNet), the Genetic Epidemiology Net- work of Atherosclerosis (GENOA), the Hypertension Genetic Epi- demiology Network (HyperGEN), and Stanford Asian Pacific Pro- gram in Hypertension and Insulin Resistance (SAPPHIRe). Recruitment and inclusion criteria varied across networks and are published elsewhere. 16 Informed consent was obtained from all participants. Data Collection All networks measured a standard set of 95 phenotypes. Stroke and MI data were obtained through self-report based on the following questions: “Have you ever been told by a doctor that you had a heart attack?” and “Have you ever been told by a doctor that you had a stroke or transient ischemic attack?” Diabetes status was also assessed in this manner. Lifestyle factors such as smoking status, alcohol use, and family structure were ascertained by interview. Anthropomorphic data were recorded according to standardized protocols. Other Measurements Systolic and diastolic blood pressures were measured using an automated device with a consistent protocol across networks. Blood pressure was measured 3 times on each participant and averaged for analysis. Lipids were measured spectrophotometrically using enzy- matic methods (Cobas Mira analyzer; Roche Diagnostics) in GENOA, an enzymatic method in SAPPHIRe, the ProAct cholester- ol system (Roche) in GenNet, and an enzymatic method (COBAS FARA centrifugal analyzer; Roche Diagnostics) in HyperGEN. Genotyping Genotyping was done by the National Heart, Lung and Blood Institute Mammalian Genotyping Service (Marshfield, Wis). Geno- types for 391 short tandem repeat polymorphisms were determined by automated polymerase chain reaction and scanning fluorescence detection. Statistical Analysis Race-specific and combined Kong-Cox logarithm of the odds (LOD) scores 17 were calculated using the nonparametric LOD feature in MERLIN, 18 which tests for excess allele sharing among an ASP. LOD scores were calculated within racial groups and summed to obtain whole-sample estimates. In MERLIN, 18 empirical probability values were also calculated for Kong-Cox LOD scores based on gene-dropping simulations in which a single, fully informative marker is repeatedly, randomly “dropped” from parents to offspring in pedigrees with the same structure and affection status as the actual families. A LOD score was computed for each simulation (N=1 000 000), the set of which was considered as an empirical distribution under the null hypothesis of no linkage between marker and trait loci. Results The overall FBPP characterized 9607 individuals. There were 226 black, 395 Hispanic, and 207 white families; 880 individuals reported a history of stroke or MI and 83 individuals reported a history of both events. Table 1 shows baseline characteristics. For ASP linkage analysis, there were 828 individuals in 103 families with multiply affected individuals: 29 families had a pair of MI-affected individuals and 10 families had a pair affected for stroke; 30 families had a discordantly affected pair (ie, one had a stroke, one had MI); 13 families had one member of the relative pair with both events and the other had one event. Of the 21 families with more than 2 affected members, 5 had all affected members concordant for a history of MI and 2 for history of stroke. The remaining 14 families had various combinations of concordant and discor- dant affection status among relative pairs. Kong-Cox LOD scores were computed for 32 black, 26 Hispanic, and 37 white families with an ASP. The Figure shows the Kong-Cox LOD plots for each race group and in the combined sample. Table 2 shows the -log 10 of the empirically determined probability values greater than 2.0 and their chromosomal locations. Discussion In the FBPP, we found 3 significant linkage regions for the composite phenotype that are consistent with prior reports (summarized in Table 3). Although our LOD scores in these previously identified linkage regions do not achieve genome- wide significance, nor were they our most significant results, we show -log 10 probability values of 1.9, 1.9, and 1.0 at 2q36-q37.3, 2q21.1-22, and 14q32.2, respectively. The pre- vious 2q36-q37.3 signal was for MI or coronary heart disease in a small sample of Australian ASPs, 8 whereas our signal was mainly in blacks. Genes of interest in the vicinity include Table 1. Descriptive Characteristics of the FBPP Sample by Race (N9607) Mean (SD or %) Variable Black Hispanic White P * Age, years 50.5 (13.4) 55.2 (11.9) 53.3 (13.5) 0.0001 Body mass index, kg/m 2 31.2 (7.4) 30.9 (6.2) 29.7 (6.2) 0.0001 Systolic blood pressure, mm Hg 130 (22.6) 131 (22.5) 127 (20.5) 0.0001 Diastolic blood pressure, mm Hg 73 (12.5) 71 (10.6) 72 (11.1) 0.0001 Cholesterol, mg/dL 199.8 (44.4) 205.2 (47.1) 204.4 (38.2) 0.0001 Drinks per week 2.9 (8.9) 8.9 (14.7) 3.4 (6.6) 0.0001 Stroke, N 189 (4.6) 76 (4.6) 117 (3.0) 0.0002 MI, N 188 (4.6) 111 (6.8) 252 (6.5) 0.0005 Diabetes, % 17.9 60.9 10.7 0.0001 Current smoker, % 27.7 17.2 13.9 0.0001 *P values are for analysis of variance tests for overall differences in outcome variables by race. 1116 Stroke April 2008 Downloaded from http://ahajournals.org by on March 24, 2022
A Whole-Genome Scan for Stroke or Myocardial Infarction in Family Blood Pressure Program Families Richard Sherva, PhD; Michael B. Miller, PhD; James S. Pankow, PhD; Steven C. Hunt, PhD; Eric Boerwinkle, PhD; Thomas H. Mosley, PhD; Alan B. Weder, MD; J. David Curb, MD; Amy Luke, MD; Alanna C. Morrison, PhD; Myriam Fornage, PhD; Donna K. Arnett, PhD Background and Purpose—Atherothrombotic diseases, including stroke and myocardial infarction, share a common pathogenesis. Chromosomal regions have been linked to atherothrombotic diseases in family studies, and association studies have identified candidate gene polymorphisms that affect the risk of stroke and/or myocardial infarction. Using data from the Family Blood Pressure Program, we tested for chromosomal regions linked to the composite phenotype of stroke or myocardial infarction in a large set of hypertensive families. Methods—Nonparametric linkage analysis was implemented in MERLIN, which tests for excess allele-sharing among affected siblings. Empirical distributions based on gene dropping simulations were constructed for each test statistic, and the ⫺log10 of the associated probability values were compared. Results—Analyses were based on 9607 individuals in 226 black, 395 Hispanic, and 207 white families; 106 families had multiple affected individuals. Several regions showed linkage to stroke or myocardial infarction, most significantly in Hispanics on chromosomes 2p21 (⫺log10 P⫽3.0) and 7q21.1 (⫺log10 P⫽2.8), 9q32 in blacks and Hispanics (⫺log10 P⫽3.0), 11p13 in blacks (⫺log10 P⫽2.1), and 12q24.33 in whites (⫺log10 P⫽3.0). Conclusions—There is statistically significant evidence for loci affecting stroke or myocardial infarction on chromosomes 2, 9, and 12. (Stroke. 2008;39:1115-1120.) Key Words: cerebrovascular accident 䡲 epidemiology 䡲 linkage (genetics) 䡲 LOD score 䡲 myocardial infarction Downloaded from http://ahajournals.org by on March 24, 2022 S troke and myocardial infarction (MI) are common manifestations of atherothrombotic disease and together are the leading cause of death and disability in the United States. There are approximately 865 000 new and recurrent MIs in the United States each year and 750 000 new and recurrent cases of stroke.1 Ischemic blockage accounts for approximately 80% of stroke events; approximately 10% are due to intracerebral hemorrhage; 10% result from subarachnoid hemorrhage.2 Ischemic stroke and MI are similar phenotypes despite occurring in different locations. They share several pathophysiological mechanisms (eg, inflammation, atherosclerosis, plaque rupture, thrombosis, ischemic blockage) and risk factors (hypertension, smoking, dyslipidemia, no or high alcohol consumption, inflammation, homocystinemia, hypercoagulable states, diabetes).3,4 Both phenotypes have a substantial familial component. Monozygotic twins are 1.6 times more likely to be concordant for stroke than dizygotic twins; several studies show a small, significant increase in stroke risk in those with a family history of stroke.5 MIs are 2.48-fold more common in individuals with a sibling who has had an MI compared with those without.6 The heritability of arterial and venous thrombosis is estimated at 60% using liability threshold models.7 Past genome scans for stroke and MI have identified potential regions and genes of interest in various populations.8 –15 Combining stroke and MI allows detection of genes common to the pathogenesis of both and may increase power for detection of susceptibility loci. Therefore, we performed a genome scan for stroke or MI in black, Hispanic, and white families enrolled in the Family Blood Pressure Program (FBPP), the largest sample of families with data available for linkage analysis on stroke and MI. A combination of liability threshold and affected sibpair (ASP) models was used to detect linked regions. Received April 4, 2007; final revision received July 2, 2007; accepted July 20, 2007. From the Division of Epidemiology and Community Health (R.S., M.B.M., J.S.P.), University of Minnesota, Minneapolis, Minn; the Cardiovascular Genetics Division (S.C.H.), University of Utah School of Medicine, Salt Lake City, Utah; the Human Genetics Center (E.B.) and the Institute of Molecular Medicine (E.B.), University of Texas–Houston Health Science Center, Houston, Texas; the Department of Medicine (T.H.M.), University of Mississippi Medical Center, Jackson, Miss; the Division of Hypertension (A.B.W.), University of Michigan School of Medicine, Ann Arbor, Mich; the Pacific Health Research Institute (J.D.C.), Honolulu, Hawaii; the Department of Preventative Medicine and Epidemiology (A.L.), Loyola University Strich School of Medicine, Maywood, Ill; the Human Genetics Center (A.C.M.), University of Texas at Houston, Houston, Texas; the Institute of Molecular Medicine for the Prevention of Human Diseases (M.F.), University of Texas Health Science Center, Houston, Texas; and the Department of Epidemiology (D.K.A.), University of Alabama Birmingham, Ala. Correspondence to Donna K. Arnett, PhD, MSPH, RPHB 220E, 1530 3rd Avenue South, Birmingham AL 35294-0022. E-mail arnett@uab.edu © 2008 American Heart Association, Inc. Stroke is available at http://stroke.ahajournals.org DOI: 10.1161/STROKEAHA.107.490433 1115 1116 Stroke April 2008 Table 1. Descriptive Characteristics of the FBPP Sample by Race (Nⴝ9607) Mean (SD or %) Variable Black Hispanic White P* Age, years 50.5 (13.4) 55.2 (11.9) 53.3 (13.5) ⬍0.0001 Body mass index, kg/m2 31.2 (7.4) 30.9 (6.2) 29.7 (6.2) ⬍0.0001 Systolic blood pressure, mm Hg 130 (22.6) 131 (22.5) 127 (20.5) ⬍0.0001 Diastolic blood pressure, mm Hg 73 (12.5) 71 (10.6) 72 (11.1) ⬍0.0001 199.8 (44.4) 205.2 (47.1) 204.4 (38.2) ⬍0.0001 Cholesterol, mg/dL Drinks per week 2.9 (8.9) 8.9 (14.7) 3.4 (6.6) ⬍0.0001 Stroke, N 189 (4.6) 76 (4.6) 117 (3.0) 0.0002 MI, N 188 (4.6) 111 (6.8) 252 (6.5) Diabetes, % 17.9 60.9 10.7 ⬍0.0001 Current smoker, % 27.7 17.2 13.9 ⬍0.0001 0.0005 *P values are for analysis of variance tests for overall differences in outcome variables by race. Materials and Methods Recruitment and Participants FBPP data were obtained by pooling data from 4 National Heart Lung and Blood Institute hypertension genetics studies, The Genetic Epidemiology Network (GenNet), the Genetic Epidemiology Network of Atherosclerosis (GENOA), the Hypertension Genetic Epidemiology Network (HyperGEN), and Stanford Asian Pacific Program in Hypertension and Insulin Resistance (SAPPHIRe). Recruitment and inclusion criteria varied across networks and are published elsewhere.16 Informed consent was obtained from all participants. Downloaded from http://ahajournals.org by on March 24, 2022 Data Collection All networks measured a standard set of 95 phenotypes. Stroke and MI data were obtained through self-report based on the following questions: “Have you ever been told by a doctor that you had a heart attack?” and “Have you ever been told by a doctor that you had a stroke or transient ischemic attack?” Diabetes status was also assessed in this manner. Lifestyle factors such as smoking status, alcohol use, and family structure were ascertained by interview. Anthropomorphic data were recorded according to standardized protocols. Other Measurements Systolic and diastolic blood pressures were measured using an automated device with a consistent protocol across networks. Blood pressure was measured 3 times on each participant and averaged for analysis. Lipids were measured spectrophotometrically using enzymatic methods (Cobas Mira analyzer; Roche Diagnostics) in GENOA, an enzymatic method in SAPPHIRe, the ProAct cholesterol system (Roche) in GenNet, and an enzymatic method (COBAS FARA centrifugal analyzer; Roche Diagnostics) in HyperGEN. Genotyping Genotyping was done by the National Heart, Lung and Blood Institute Mammalian Genotyping Service (Marshfield, Wis). Genotypes for 391 short tandem repeat polymorphisms were determined by automated polymerase chain reaction and scanning fluorescence detection. Statistical Analysis Race-specific and combined Kong-Cox logarithm of the odds (LOD) scores17 were calculated using the nonparametric LOD feature in MERLIN,18 which tests for excess allele sharing among an ASP. LOD scores were calculated within racial groups and summed to obtain whole-sample estimates. In MERLIN,18 empirical probability values were also calculated for Kong-Cox LOD scores based on gene-dropping simulations in which a single, fully informative marker is repeatedly, randomly “dropped” from parents to offspring in pedigrees with the same structure and affection status as the actual families. A LOD score was computed for each simulation (N⫽1 000 000), the set of which was considered as an empirical distribution under the null hypothesis of no linkage between marker and trait loci. Results The overall FBPP characterized 9607 individuals. There were 226 black, 395 Hispanic, and 207 white families; 880 individuals reported a history of stroke or MI and 83 individuals reported a history of both events. Table 1 shows baseline characteristics. For ASP linkage analysis, there were 828 individuals in 103 families with multiply affected individuals: 29 families had a pair of MI-affected individuals and 10 families had a pair affected for stroke; 30 families had a discordantly affected pair (ie, one had a stroke, one had MI); 13 families had one member of the relative pair with both events and the other had one event. Of the 21 families with more than 2 affected members, 5 had all affected members concordant for a history of MI and 2 for history of stroke. The remaining 14 families had various combinations of concordant and discordant affection status among relative pairs. Kong-Cox LOD scores were computed for 32 black, 26 Hispanic, and 37 white families with an ASP. The Figure shows the Kong-Cox LOD plots for each race group and in the combined sample. Table 2 shows the ⫺log10 of the empirically determined probability values greater than 2.0 and their chromosomal locations. Discussion In the FBPP, we found 3 significant linkage regions for the composite phenotype that are consistent with prior reports (summarized in Table 3). Although our LOD scores in these previously identified linkage regions do not achieve genomewide significance, nor were they our most significant results, we show ⫺log10 probability values of 1.9, 1.9, and 1.0 at 2q36-q37.3, 2q21.1-22, and 14q32.2, respectively. The previous 2q36-q37.3 signal was for MI or coronary heart disease in a small sample of Australian ASPs,8 whereas our signal was mainly in blacks. Genes of interest in the vicinity include Sherva et al Whole-Genome Scan for Stroke or MI 1117 Downloaded from http://ahajournals.org by on March 24, 2022 Figure. Kong-Cox LOD plots for stroke or MI in affected sibpairs. insulin receptor substrate-1, the high-density lipoprotein cholesterol-binding protein, and calpain 10. Similarly, our modest signal at 14q32.2 was driven mainly by black and Hispanic families, whereas the original finding was in Ger- man families.11 Our replication of linkage on 2q21.1-22 was also observed in both black and Hispanic families, but not in whites. The original finding was in Finnish families ascertained for premature coronary heart disease.9 This region 1118 Stroke April 2008 Table 2. Chromosomal Regions With ⴚlog10 P Values of Combined Race Kong-Cox LOD Scores Greater Than 2.0 Location (cM) ⫺Log10 Kong-Cox P Value 1 243 2.2 2 64 3.0 2 186 2.2 4 20 2.2 7 94 2.8 9 99 3.0 2.4 Chromosome 9 140 11 45 2.1 12 166 3.0 20 97 2.1 Downloaded from http://ahajournals.org by on March 24, 2022 contains the gene thrombospondin type-1 domain-containing protein 7B precursor. The protein’s function has not been characterized, although thrombospondin type-1, in addition to its role in platelet aggregation and coagulation, interacts with platelet-derived growth factor to stimulate smooth muscle cell proliferation19 and with platelet glycoprotein IV (CD36) to inhibit angiogenesis.20 The latter findings are of particular interest because CD36, discussed in more detail subsequently, lies directly under our chromosome 7 peak. If the thrombospondin type-1 domain on this protein has similar functions, it could conceivably affect atherogenesis, stroke, and MI through multiple pathways. In addition to the genes located in previously identified regions, our novel linkage regions also contain interesting candidates. One of these lies directly under the peak at 20 cM on chromosome 4. HS3ST1 encodes the rate-limiting enzyme heparan sulfate 3-O-sulfotransferase-1, which in turn controls production of the anticoagulant heparan sulfate (HSact) in endothelial cells. HajMohammadi et al created an HS3ST1 double knockout mouse strain; although their tissue HSact levels were dramatically reduced, the knockout mice showed a similar hemostatic profile as wild-type mice. The authors suggest that deficiency in the activity of the human HS3ST1 gene product might exert an affect only when combined with deficiencies for other HS3ST1 isozymes or other anticoagulants/fibrinolytics.21 Probably the most promising candidate gene in a novel linkage region is located directly under the 93 cM peak on chromosome 7. CD36 is a receptor for thrombospondin type-1, which affects the adhesion of platelets to collagen.22 Substantial research has been conducted on this gene, mostly in the context of metabolic syndrome and cellular fatty acid uptake. Griffin et al found an increase in macrophage CD36 transcripts under high glucose conditions in human vascular lesion cells, suggesting this as a mechanism for accelerated atherosclerosis in patients with diabetes.23 Also, CD36 is a scavenger receptor specific to oxidized low-density lipoprotein.24 Animal models collectively show that CD36 deficiency underlies insulin resistance, defective fatty acid metabolism, and hypertriglyceridemia.25–27 Finally, the evidence suggesting this gene may interact with a domain of a protein located in another of our stroke/MI-linked regions may warrant molecular study of both genes. We found racial/ethnic differences in our findings, consistent with the observed variation in lifestyle and, perhaps, genetic factors that underlie these phenotypes across these groups. Stroke and MI rates vary by race/ethnicity. Blacks and Hispanic Americans have higher stroke rates than whites, although stroke rate differences for Hispanics are mostly attributable to Mexican Americans having an increased incidence of intracerebral hemorrhage and subarachnoid hemorrhage.28 In contrast, MI rates are similar across the ethnic groups.1 Although we adjusted for lifestyle and other risk factors in our analysis, it is likely that these adjustments did not fully capture the nongenetic sources of variation among ethnic groups. Additionally, gene– environment interactions could explain the race-specific findings. The different recruitment and inclusion protocols that gave rise to the samples in each ethnic group could also have influenced the results. Although similar inclusion criteria were used in black and white families, Hispanic families were eligible only if they had 2 or more members with adult-onset diabetes. This fact could also imply different genetic mech- Table 3. Linkage Peaks From Previous Genome Scans for Atherothrombotic Disease End Points and ⴚlog10 P Values at Corresponding Locations in the Current Study Chromosomal Location LOD Score Phenotype Population 2q36-q37.3 2.63 MI/CHD 53 Australian sibpairs7 ⫺log10 P Value From Current Study (⌬ location) 8 1.9 (15 cM) 2q21.1-22 3.0 Premature CHD 156 Finnish families 1.9 (5 cM) 5q12 4.4 Ischemic stroke 476 Icelandic patients and 438 relatives13 0.7 5q12 2.06 Ischemic stroke 56 Swedish families14 0.7 10q23 2.06 CHD 99 Indo-Mauritian families9 0.0 11 13q12-13 2.86 MI 14q32.2 3.9 MI 513 western European families10 Icelandic females 1.0 0.1 16p13 3.06 CHD 99 Indo-Mauritian families9 0.8 Xq23-26 2.46 Premature CHD 156 Finnish families8 NA ⌬ location indicates difference between location of previously reported LOD score and location of peak in the current study; difference equals zero if not listed. CHD indicates coronary heart disease; NA, not applicable. Sherva et al anisms caused stroke and MI in different ethnic groups and may explain the differences in linkage results. As an example, the signal in the region of the CD36 gene was observed only in Hispanics, 60% of whom are diabetic. We confirmed our results using a liability threshold model implemented in SOLAR, calculated an empirical LOD score using 10 000 simulations, and compared the agreement between the magnitudes of the adjusted liability threshold LOD and Kong-Cox LOD scores. There was evidence for linkage using the liability threshold model at all the locations identified using ASP models, and the genomewide correlation between the ⫺log10 of the probability values for LOD scores calculated in threshold and at the corresponding location in ASP analysis was 0.44, suggesting that the findings reported here have good agreement with another independent method of linkage analysis. Study Limitations Downloaded from http://ahajournals.org by on March 24, 2022 Phenotypic measurement methods were not optimal in this study. First, stroke and MI history data were obtained through self-report and were not verified. Also, people with a history of stroke or MI that resulted in failure to meet inclusion criteria (including fatal stroke or MI) were not enrolled. In addition, stroke subtypes were not differentiated. Knowing that approximately 80% of all strokes are ischemic, any genes unique to this subtype would likely be overrepresented. Combining stroke and MI events may or may not be a weakness of these analyses. Although much evidence exists that stroke and MI are influenced by similar pathophysiological mechanisms, there may still be significant heterogeneity in the genetic mechanisms that influence risk, and certain risk factors have stronger effects on either stroke or MI. For example, serum cholesterol appears to be a more important MI risk factor,29 and its effect seems to be opposite on ischemic and hemorrhagic stroke risk.30 The importance of other risk factors also differs between stroke and MI. Pulse pressure is a significant predictor of MI but not stroke,31 whereas overall blood pressure predicts stroke rate but not pulse pressure-adjusted MI.32 LOD scores from multivariateadjusted liability threshold models were very similar to unadjusted scores, indicating that small differences in the effects of certain prognostic factors on stroke versus MI would not significantly bias the results. In addition, the high number of families with members affected by both types of events supports the idea that stroke and MI share common genetic factors. Finally, ascertainment of these families may have reduced our power to detect linkage but does not increase the chances of observing false-positive LOD scores. Enrolling the most high-risk participants may reduce the amount of genetic heterogeneity available and provide a less distinct “reference” group to which affected individuals can be compared. Linkage results are robust to these issues, however, because LOD scores are based on the correlation between genetic similarity and phenotypic similarity. Although these families are, by definition, genetically similar, and due to ascertainment more phenotypically similar, the “Mendelian coin toss” on which identity-by-descent calculations are based assures that ascertainment will not cause type 1 error. Whole-Genome Scan for Stroke or MI 1119 In conclusion, we presented results of a whole-genome scan for stroke or MI conducted in a large, ethnically diverse pool of families. We used 2 fundamentally different linkage models to show statistically significant evidence for loci affecting stroke or MI on chromosomes 2, 9, and 12. Source of Funding Support for this research provided by The National Heart Lung and Blood Institute cardiovascular disease genetics training grant 5 T32 HL007972. Disclosures None. References 1. Thom T, Haase N, Rosamond W, Howard VJ, Rumsfeld J, Manolio T, Zheng ZJ, Flegal K, O’Donnell C, Kittner S, Lloyd-Jones D, Goff DC Jr, Hong Y, Adams R, Friday G, Furie K, Gorelick P, Kissela B, Marler J, Meigs J, Roger V, Sidney S, Sorlie P, Steinberger J, Wasserthiel-Smoller S, Wilson M, Wolf P, American Heart Association Statistics Committee and Stroke Statistics Subcommittee. Heart disease and stroke statistics—2006 update: a report from the American Heart Association Statistics Committee and Stroke Statistics Subcommittee. Circulation. 2006; 113:e85– e151. 2. Rosamond WD, Folsom AR, Chambless LE, Wang CH, McGovern PG, Howard G, Copper LS, Shahar E. Stroke incidence and survival among middle-aged adults: 9-year follow-up of the Atherosclerosis Risk in Communities (ARIC) cohort. 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