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Hydrogen-bonding interactions in a zwitterion derivative: insights from crystallographic and theoretical studies

Acta Crystallographica Section A Foundations of Crystallography, 2013
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28th European Crystallographic Meeting, ECM 28, UK, 2013 Acta Cryst. (2013). A69, s531 Page s531 [MS25-P01] Hydrogen bonding interactions in a zwitter-ion derivative: Insights from crystallographic and theoretical studies Mukesh M. Jotani Department of Physics, Bhavan’s Sheth R.A. College of Science, Khanpur, Ahmedabad, Gujarat, 380 001, India. Email:mmjotani@rediffmail.com The Schiff-base ligands and their complexes have attracted considerable interest due to their potential applications as analytical reagents [1-4] and their biological activities such as antibacterial and antifungal [5], anticancer [6] etc. Moreover, they are also important in industrial applications of liquid crystals, light-driven switches and image storage devices [7, 8]. Due to the biological importance, the crystal structure of a zwitter-ion derivative- 2-[2hydroxyphenyl ) iminomethyl] phenol is determined and hydrogen bonding interactions together with theoretically computed structure are discussed herein. In the title molecule, C 13 H 11 NO 2 , the two independent molecules have orthogonal orientations characterized by dihedral angle of 83.77 (4)° between the mean planes passing through atoms of respective molecule. The quantitative analysis of root mean square fit between non-hydrogen atoms of both the molecules (r.m.s. deviation = 0.017 Å) indicates almost similar conformation for both the molecules. The two intramolecular N-H…O hydrogen bonds with S(6)S(5) graph- set motif [9] and an intermolecular O-H…O hydrogen bond in each of the two molecules form two dimensional hydrogen bonding network in a zigzag fashion along bc-plane. These hydrogen bonded sheets in a crystal are linked through van der Waals force in (1 0 0) direction. The conformational difference between theoretical and experimental structures obtained from semi- empirical quantum chemical and single crystal X-ray diffraction methods respectively [10,11] explain the role of hydrogen bonding interactions in the packing of structure. The small HOMO- LUMO energy gap of 6.959 eV indicates the intermolecular charge transfer between the atoms of two molecule system. [1] Eltayeb, N. E., Teoh, S. G., Chantrapromma, S., Fun, H.-K. & Ibrahim, K. (2007). Acta Cryst. E63, o3094-o3095. [2] Eltayeb, N. E., Teoh, S. G., Chantrapromma, S., Fun, H.-K. & Ibrahim, K. (2007). Acta Cryst. E63, m2269-m2270. [3] Eltayeb, N. E. & Ahmed, T. A. (2005). J. Sci. Technol. 6, 51-59. [4] Eltayeb, N. E. & Ahmed, T. A. (2005). Sudan J. Basic Sci. 7,97-108. [5] Karthikeyan, M. S., Prasad, D. J., Poojary, B., Bhat, K. S., Holla, B. S. & Kumari, N. S. (2006) Bioorg. Med.Chem. 14, 7482-7489. [6] Dao, V.-I., Gaspard, C., Mayer, M., Werner, G. H., Nguyen, S. N. & Michelot, R. J. (2000). Eur. J. Med. Chem.. 35, 805-813. [7] Liu, Z. F., Hashimoto, K. & Fujishima, A. (1990). Nature (London), 347, 658-660. [8] Ikeda, T. & Tsutsumi, O. (1995). Science, 268, 18731875. [9] Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N. L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555, 1573. [10] Sheldrick, G. M. (2008). Acta Cryst. A64, 112 122. [11] Stewart, J. P. MOPAC2012, Stewart Computational Chemistry, web: http:// OpenMOPAC.net Keywords: Schiff-base, Semi-empirical method, hydrogen bonding interactions. Poster Presentations
Poster Presentations [MS25-P01] Hydrogen bonding interactions intermolecular charge transfer between the atoms in a zwitter-ion derivative: Insights from of two molecule system. crystallographic and theoretical studies Mukesh M. Jotani [1] Eltayeb, N. E., Teoh, S. G., Chantrapromma, S., Fun, H.-K. & Ibrahim, K. (2007). Acta Cryst. Department of Physics, Bhavan’s Sheth R.A. E63, o3094-o3095. College of Science, Khanpur, Ahmedabad, [2] Eltayeb, N. E., Teoh, S. G., Chantrapromma, Gujarat, 380 001, India. S., Fun, H.-K. & Ibrahim, K. (2007). Acta Cryst. Email:mmjotani@rediffmail.com E63, m2269-m2270. [3] Eltayeb, N. E. & Ahmed, T. A. (2005). J. Sci. The Schiff-base ligands and their complexes Technol. 6, 51-59. have attracted considerable interest due to their [4] Eltayeb, N. E. & Ahmed, T. A. (2005). Sudan potential applications as analytical reagents J. Basic Sci. 7,97-108. [1-4] and their biological activities such as [5] Karthikeyan, M. S., Prasad, D. J., Poojary, B., antibacterial and antifungal [5], anticancer [6] etc. Bhat, K. S., Holla, B. S. & Kumari, N. S. (2006) Moreover, they are also important in industrial Bioorg. Med.Chem. 14, 7482-7489. applications of liquid crystals, light-driven [6] Dao, V.-I., Gaspard, C., Mayer, M., Werner, switches and image storage devices [7, 8]. Due G. H., Nguyen, S. N. & Michelot, R. J. (2000). to the biological importance, the crystal structure Eur. J. Med. Chem.. 35, 805-813. of a zwitter-ion derivative- 2-[2hydroxyphenyl ) [7] Liu, Z. F., Hashimoto, K. & Fujishima, A. iminomethyl] phenol is determined and hydrogen (1990). Nature (London), 347, 658-660. bonding interactions together with theoretically [8] Ikeda, T. & Tsutsumi, O. (1995). Science, computed structure are discussed herein. In the 268, 18731875. title molecule, C13H11NO2, the two independent [9] Bernstein, J., Davis, R. E., Shimoni, L. & molecules have orthogonal orientations Chang, N. L. (1995). Angew. Chem. Int. Ed. characterized by dihedral angle of 83.77 (4)° Engl. 34, 1555, 1573. between the mean planes passing through atoms [10] Sheldrick, G. M. (2008). Acta Cryst. A64, of respective molecule. The quantitative analysis 112 122. of root mean square fit between non-hydrogen [11] Stewart, J. P. MOPAC2012, Stewart atoms of both the molecules (r.m.s. deviation = Computational Chemistry, web: http:// 0.017 Å) indicates almost similar conformation OpenMOPAC.net for both the molecules. The two intramolecular N-H…O hydrogen bonds with S(6)S(5) graph- Keywords: Schiff-base, Semi-empirical method, set motif [9] and an intermolecular O-H…O hydrogen bonding interactions. hydrogen bond in each of the two molecules form two dimensional hydrogen bonding network in a zigzag fashion along bc-plane. These hydrogen bonded sheets in a crystal are linked through van der Waals force in (1 0 0) direction. The conformational difference between theoretical and experimental structures obtained from semiempirical quantum chemical and single crystal X-ray diffraction methods respectively [10,11] explain the role of hydrogen bonding interactions in the packing of structure. The small HOMOLUMO energy gap of 6.959 eV indicates the 28th European Crystallographic Meeting, ECM 28, UK, 2013 Acta Cryst. (2013). A69, s531 Page s531