Precision Agric (2009) 10:471–487
DOI 10.1007/s11119-009-9108-2
The delineation of agricultural management zones
with high resolution remotely sensed data
Xiaoyu Song Æ Jihua Wang Æ Wenjiang Huang Æ Liangyun Liu Æ
Guangjian Yan Æ Ruiliang Pu
Published online: 11 February 2009
Springer Science+Business Media, LLC 2009
Abstract Remote sensing (RS) techniques have been widely considered to be a promising source of information for land management decisions. The objective of this study was
to develop and compare different methods of delineating management zones (MZs) in a
field of winter wheat. Soil and yield samples were collected, and five main crop nutrients
were analyzed: total nitrogen (TN), nitrate nitrogen (NN), available phosphorus (AP),
extractable potassium (EP) and organic matter (OM). At the wheat heading stage, a scene
of Quickbird imagery was acquired and processed, and the optimized soil-adjusted vegetation index (OSAVI) was determined. A fuzzy k-means clustering algorithm was used to
define MZs, along with fuzzy performance index (FPI), and modified partition entropy
(MPE) for determining the optimal number of clusters. The results showed that the optimal
number of MZs for the present study area was three. The MZs were delineated in three
ways; based on soil and yield data, crop RS information and the combination of soil, yield
and RS information. The evaluation of each set of MZs showed that the three methods of
delineating zones can all decrease the variance of the crop nutrients, wheat spectral
parameters and yield within the different zones. Considering the consistent relationship
between the crop nutrients, wheat yield and the wheat spectral parameters, satellite remote
sensing shows promise as a tool for assessing the variation in soil properties and yield in
X. Song (&) J. Wang W. Huang L. Liu
National Engineering Research Center for Information Technology in Agriculture,
Beijing 100097, China
e-mail: Songxy@nercita.org.cn; song.xiao.yu@163.com
X. Song G. Yan
College of Geography/Research Center for Remote Sensing and GIS, Beijing Normal University,
Beijing 100875, China
X. Song J. Wang W. Huang L. Liu
Key Laboratory for Information Technologies in Agriculture, The Ministry of Agriculture,
Beijing, China
R. Pu
Department of Geography, University of South Florida, Tampa, FL, USA
123
472
Precision Agric (2009) 10:471–487
arable fields. The results of this study suggest that management zone delineation using RS
data was reliable and feasible.
Keywords Quickbird imagery Management zone (MZ)
Optimized soil-adjusted vegetation index (OSAVI) Winter wheat
Introduction
Recent advances in technology for variable-rate applications in precision agriculture,
combined with advances in global positioning systems (GPS), geographic information
systems (GIS) and remote sensing (RS), have provided powerful analytical tools for farm
management. This has been termed ‘precision crop management’ (PCM) and is defined
as an information- and technology-based agricultural management system to identify,
analyze and manage soil spatial and temporal variation within fields for optimum
profitability, sustainability and protection of the environment. Variable-rate technology
(VRT), probably the best-developed part of the PCM system (Searcy 1995), applies
production inputs at rates appropriate to the soil and plant conditions within fields.
Variable-rate technology has been shown to be successful for several agricultural
products, such as herbicides (Mortensen et al. 1995), fertilizers (Schueller 1992),
insecticides (Weisz et al. 1996) and seeds. A popular basis for applying VRT is the sitespecific management zone (MZ) method (Khosla et al. 2002; Koch et al. 2004). High
quality information about the variation in soil and crop properties is the basis of effective
management. There are several approaches for the delineation of site-specific MZs
(Rodrigo and Oscar 2007). The first is based on soil information (Nolan et al. 2000;
Fraisse et al. 2001). Sampling the soil on a grid to determine the chemical and physical
properties is used widely for characterizing spatial variation and zone delineation
(Franzen et al. 2000; Flowers et al. 2005). The second approach is based on yield maps
from several seasons (Taylor et al. 2001; Blackmore 2000; Diker et al. 2004). Soil zones
based on topography have also been used for determining management zones. More
practical approaches, such as the farmer’s knowledge, have also been considered in
delineating MZs. For example, Fleming et al. (2004) used a farmer’s experience in
combination with aerial photographs to define areas of similar soil properties.
Precision agriculture (PA) was introduced to China in the early 1990s and it has
developed rapidly in recent years. For example, Hu et al. (1999) found that the scale of
variation for soil nitrate- nitrogen (NN) was less 10 m, whereas that for ammonia–nitrogen,
OM, AP and TN varied from 22.4 to 58.5 m. Gao et al. (2002) studied site-specific
fertilizer management based on the spatial variation in crop nutrients and yield. Xue et al.
(2004) applied fertilizer nitrogen for winter wheat at a variable-rate based on an
18 9 18 m2 grid-sampling of alkali-soluble soil nitrogen and a yield map. Li et al. (2005)
delineated management zones for precision agriculture using yield data over 4 years at the
National Experimental Station for Precision Agriculture of China. The research by Zhang
et al. (2006) showed that variable-rate fertilizer application on maize resulted in a higher
yield and smaller coefficient of variation (CV) for the crop nutrients than conventional
uniform fertilizer application.
In principle, these methods seem logical, but there are limitations. Soil sampling on a
grid can provide basic information for delineating management zones, but the sampling
density should be related to the degree of variation at the site. It should be intensive enough
123
Precision Agric (2009) 10:471–487
473
to be able to create sound management zones. For this reason, soil sampling is labor
intensive, time consuming and sometimes temporally variable, which means that the soil
needs to be sampled every growing season to determine crop nutrient levels in fields where
there is variable-rate fertilizer application (Gotway et al. 1996; Fleming et al. 2001; Nolan
et al. 2000; Koch and Khosla 2003). Yield maps produced from GPS-equipped grain yield
monitors also provide information about the spatial variation of a field. Taylor et al. (2001)
discussed several methods for using yield monitor data to develop yield goal maps.
However, their yield prediction results were inconsistent across site-years, and they concluded that several years of data would be needed to develop appropriate yield goal maps
for a given location.
Remotely sensed images acquired by aircraft and satellite-based sensors have the
potential to provide a synoptic view of an entire field, not just the sample sites, within the
time and space requirements of PCM applications. Therefore, RS techniques have been
considered as a promising source of information for land management decisions (Johannsen and Barney 1981). Images from sensors have a unique role for monitoring
seasonally variable crop and soil conditions, and for time-specific and time-critical crop
management. One of the strengths of RS is the ability to obtain spatially intensive information rapidly over large areas, thus creating the potential to supply information about
spatial variation of N requirements, which is less expensive and more convenient than
currently used sources.
Considerable efforts have been devoted to detecting crop N stress using remote
sensing. In general, different levels of nitrogen stress can be detected easily from aerial
images (Blackmer et al. 1996; Ashcroft et al. 1990; Blackmer and White 1998).
Nitrogen stress increases canopy reflectance over all visible wavelengths because of a
shortage of chlorophylII and other light-absorbing pigments. Nitrogen stress may also
decrease canopy reflectance in near-infrared wavelengths (Beatty et al. 2000;
McMurtrey et al. 1994). Indices combining information from visible and near-infrared
regions may maximize sensitivity to N stress. Wright et al. (2002) used Quickbird
imagery and aerial photography provided by Environmental Mapping and Remote
Sensing (EMARS) to manage wheat grain protein. Song et al. (2004) used three airborne Push-room Hyperspectral Image (PHI) sensor images to investigate the effect of
soil nitrogen supplies and variable-rate fertilizer application on winter wheat growth.
Recently, some attempts have been made to develop and evaluate decision algorithms
for N management based on RS. Scharf and Lory (2002) developed a decision algorithm for side-dressing corn based on aerial photographs. This algorithm is based on
green-light intensity from unfertilized corn relative to well-fertilized corn; the larger the
difference in color, the more side-dressed N is recommended for the previously
unfertilized corn. Liang et al. (2005) studied the algorithm for variable-rate nitrogen
application based on the reflected spectrum from a wheat canopy, and the vegetation
index OSAVI was used to determine the amount of nitrogen fertilizer recommended for
variable-rate management. The results indicated that, compared to traditional uniform
application, variable-rate fertilizer application reduced the variation in wheat yield, ear
numbers and dry biomass, but it did not increase crop yield and grain protein content
significantly.
The objective of this study was to use multi-spectral and high spatial resolution RS data
(Quickbird image) to generate within-field MZs. Three different MZ delineation methods
that based on soil nutrient data, RS information, and soil, spectral and yield data were
evaluated in this study.
123
474
Precision Agric (2009) 10:471–487
Materials and methods
A field experiment at the National Experimental Station for Precision Agriculture of China
was designed during the 2005/2006 winter wheat growing season. Soil samples were taken,
and five crop nutrients, TN, NN, AP, EP and OM were determined using standard laboratory procedures (Zhang 2005a, b). Meanwhile, one scene of Quickbird imagery during
the wheat’s heading stage was acquired and processed. The spectral parameter of the
optimized soil-adjusted vegetation index (OSAVI) was extracted from the imagery.
Study site
This study was done at the National Experimental Station for Precision Agriculture, which
is located in the Changping district of Beijing (4010.60 N, 11626.30 E). This site has a
mean annual rainfall of 508 mm and a mean annual temperature of 13C. The winter wheat
was sown on September 29, 2005 with a 15 cm row spacing. The wheat cultivar was
Jingdong 8, which is one of the main winter wheat varieties in Northern China. The base
fertilizer was applied on September 27, 2005 and supplementary fertilizer was applied on
April 22, 2006. A square of 90 9 90 m2 in the wheat field was selected as the soil
sampling area (Fig. 1).
Data collection
Soil sampling
Soil sampling was carried out after the study area had been subdivided into 81 small plots
of 100 m2. The first set of soil samples was taken on April 4, 2006 just before fertilizer
application at the wheat elongation stage. The second set of soil samples was taken on June
16, 2006 just before the wheat harvest. The location of each soil sample was recorded by a
GPS receiver with a station-based differential signal (DGPS, Trimble 5700 RTK). The soil
samples were taken manually using a stainless steel probe. For each plot, a composite soil
sample comprising five random samples from within a 5 m radius and a depth of 0–30 cm
was taken; there were 81 soil samples in total.
Winter wheat yield data
On June 15, 2006 geo-referenced wheat yield samples were collected and threshed manually to determine the yield. For each plot, three samples, which were randomly distributed
on the plots, were collected and combined for a single plot yield. The sampling area for
each wheat plot was 3 m2. All wheat grain was expressed on a dry matter basis after the
samples were oven-dried at 60C.
Quickbird imagery
The Quickbird imagery (at wheat heading stage) covering the entire study site was
recorded on May 2, 2006. Quickbird is a commercial satellite that records high-resolution
imagery globally. Its onboard sensor has a multispectral scanner equipped with three
visible (VIS), one near infrared (NIR) and one panchromatic (PAN) band. Visible and NIR
bands acquire data with 2.4-m resolution, and PAN data are acquired at a 60- and 70-cm
123
Precision Agric (2009) 10:471–487
475
Fig. 1 Quickbird remotely sensed image of the study site
spatial resolution. Data were recorded on days with \20% cloud cover, and as close to
solar noon as possible.
Geometric and atmospheric corrections were applied to the Quickbird imagery. Relatively coarse geometric correction was carried out by choosing ground control points
(GCP) and the precise geometric correction was completed using DGPS GCPs. Atmospheric correction was done using the ‘empirical line method’ (ELM) (Farrand et al. 1994)
based on ground spectral measurements taken with an ASD FieldSpec Pro spectrometer
(Analytical Spectral Devices, Boulder, CO, USA). A cement field in the National
Experimental Station for Precision Agriculture was selected as the bright object, and a
reservoir with pure water near the station was selected as the dark object. After the
geometric and atmospheric corrections, a pan-sharpening process was applied to the
Quickbird’s four multi-spectral bands by using the pan band. Consequently, the Quickbird
image has four 0.6 m nominal spatial resolution bands.
123
476
Precision Agric (2009) 10:471–487
Extraction of vegetation indices
Soil reflectance is often greater than crop reflectance in the visible wavelengths and can,
therefore, interfere with remote estimates of crop reflectance. The optimized soil-adjusted
vegetation index (OSAVI) was developed by Rondeaux et al. (1996) using bidirectional
reflectance in the near-infrared (NIR) and red (R) bands:
OSAVI ¼ ð1 þ 0:16Þðqnir qr Þ=ðqnir þ qr þ 0:16Þ;
ð1Þ
where qnir and qr are the reflectance of near infrared and red bands, respectively. The soil
adjustment coefficient (0.16) was selected as the optimal value to minimize variation
arising from the soil background. The residual variation in OSAVI caused by the soil was
spread evenly across the full range (0–1) of crop groundcover, making this index particularly suitable for agricultural applications. The OSAVI index is closely related to many
vegetation properties, such as leaf area index, vegetation cover, vegetation biomass and
crop growth, therefore, it is often used to monitor crop growth and to predict crop yield. In
the present study, OSAVI was calculated to reflect wheat cover and growth.
Methods of analysis
Statistical analyses, including the Kappa coefficient, were performed to make a systematic
comparison of RS-, soil and yield- and RS, soil and yield-based methods for generating
MZs. (Ahn and Mezzich 1989; Erik 1996). Ordinary kriging and fuzzy k-means clustering
were also used in this study. Conventional statistics were computed with Excel 2003.
Variowin 2.2 (Pannatier 1996) was used to compute the variograms and Arcgis9.0 was
used for kriging (ESRI 2001). The Quickbird image was analyzed and displayed with
ENVI 4. 1 (ITT 2003), and Fuzme3.5 was used for the fuzzy k-means clustering algorithm
in this study (Minasny 1999).
Geostatistical analysis
The geostatistical tools of variography and kriging were used in this study (Edward and
Srivastava 1989; Zhang 2005a, b). To characterize the spatial variation of the soil properties and wheat yield data, experimental variograms were computed on the selected soil
variables and yield data using Variowin 2.2. Isotropic models were fitted to the experimental variograms to determine the type of spatial structure. The parameters of the fitted
models were then used with the data for ordinary kriging in Arcgis9.0. The values of the
selected soil properties and yield were predicted on a 0.6 m grid at un-sampled locations
and the predictions were used to produce contour maps.
Fuzzy k-means clustering algorithm
One approach to fuzzy classification is fuzzy k-means (de Gruijter and McBratney 1988). It
partitions a set of data {x1, x2, … xn} into k clusters to minimize the squared distances
between a point and the class centroid within the cluster. The objective function is:
J¼
c
n X
X
i¼1
subject to the following conditions:
123
k¼1
m/ik d2 ðxi ck Þ;
ð2Þ
Precision Agric (2009) 10:471–487
477
k
X
mik ¼ 1
i ¼ 1; 2; . . .; n;
k¼1
n
X
mik [ 0 k ¼ 1; 2; . . .; c;
i¼1
mik 2 f0; 1g
i ¼ 1; 2; . . .; n; k ¼ 1; 2; . . .; c;
ð3Þ
where n is the number of data, c is the number of classes, mik is the fuzzy membership
matrix, / is fuzziness weighting exponent, ck is the vector representing the centroid of
class k, xi is the vector representing an individual datum i, and d2 ðxi ck Þis the squared
distance between xi and ck according to a chosen definition of distance. The latter, denoted
by dik2 / for simplicity, is the fuzzy exponent and it ranges from 1 to . It determines the
degree of fuzziness of the final solution, which is the degree of overlap between groups.
With / ¼ 1; the solution is a hard partition. As / approaches infinity, the solution
approaches its greatest degree of fuzziness.
Minimization of the objective function, J, provides the solution for the membership
function (Bezdek 1981):
2=ð/1Þ
d
mik ¼ Pc ik
j¼1
i ¼ 1; 2; . . .; n; k ¼ 1; 2; . . .; c
2=ð/1Þ
ð4Þ
dij
Pn
ck ¼ Pi¼1
n
m/ik xi
i¼1
m/ik
k ¼ 1; 2; . . .; c:
ð5Þ
To determine the optimal number of classes, the fuzziness performance index (FPI) and
modified partition entropy (MPE) (Roubens 1982) were used. The FPI is defined as:
FPI ¼ 1
cF 1
;
c1
ð6Þ
where c is the number of classes and F is the partition coefficient.
F¼
c
n X
1X
ðmik Þ2 :
n i¼1 k¼1
ð7Þ
The modified partition entropy (MPE) is given by:
MPE ¼
H
;
log c
ð8Þ
where H is the entropy function:
H¼
n X
c
1X
mik logðmik Þ:
n i¼1 k¼1
ð9Þ
The FPI estimates the degree of fuzziness generated by a specified number of classes.
Values of FPI and MPE may range from 0 to 1. Values approaching 0 indicate distinct
classes with little membership sharing, whereas values near 1 indicate non-distinct classes
with a large degree of membership sharing. The MPE estimates the degree of disorganization created by a specified number of classes. The optimal number of clusters for each
index occurs when the index is at the minimum, representing the least membership sharing
123
478
Precision Agric (2009) 10:471–487
and the greatest amount of organization as a result of the clustering process (Fridgen et al.
2004).
Methods of generating management zones
Based on the soil, yield and OSAVI data, MZs were generated by the fuzzy k-means
algorithm. Three sets of data were used to generate the MZs and the results were compared
in this study. Firstly, the kriged predictions for soil OM, AP, EK and wheat yield were
selected as the input data for clustering and to generate the MZ maps. Secondly, RS data in
the form of OSAVI were used to generate an MZ map. Lastly, all soil, yield and RS data
were combined to generate an MZ map.
Results and discussion
Summary statistics for soil, wheat yield and RS data
The soil sample data collected on April 4 and June 16, 2006 were analyzed statistically
(Table 1) before the geostatistical analysis. In accordance with the nutrient classification
standard of China’s second soil survey (Guo et al. 2004), soil AP content at the study site
was at a high level(150–200 mg kg-1); OM was at a moderate level (0.10–0.15%); EK was
at a low level (5–10 mg kg-1) and NN was also at a low level.
Wheat yield can be affected by many factors, such as crop nutrient status, fertilizer
regime, irrigation, weather, etc. In this study, the relations among the wheat yield, crop
nutrients and wheat spectral information were analyzed; the results are given in Table 2.
The results show that the wheat’s Quickbird OSAVI have large correlation coefficients
with wheat yield and nutrient status. Wheat yield also has strong positive correlations with
soil AP and TN on April 4, as well as soil OM and TN on June 16. Soil EK has weak
correlations with yield and OSAVI. The correlation of 0.94 between OM and TN measured
on June 16 is strong. The coefficient between June OM and April TN is 0.71 and 0.72 for
Table 1 Results of statistical analysis of soil properties and wheat yield
Soil nutrients
Minimum
Maximum
Mean
Standard deviation
CV (%)
April-AP (mg kg-1)
2.78
15.82
8.13
3.12
38.43
April-NN (mg kg-1)
10.03
44.46
20.79
7.30
35.09
0.09
0.13
0.11
0.01
9.69
102.80
237.20
148.02
23.06
15.58
June-AP (mg kg-1)
3.21
16.51
8.39
2.72
32.41
June-NN (mg kg-1)
0.96
15.13
3.93
2.27
57.70
June-TN (%)
0.09
0.13
0.10
0.01
9.00
86.42
157.13
112.95
12.97
11.49
April-TN (%)
April-EK (mg kg-1)
June-EK (mg kg-1)
June-OM (%)
Yield (kg ha-1)
1.43
2937.5
2.27
5986.7
1.81
4591.9
0.18
9.97
722.54
15.73
Note: n = 81, n number of soil samples, TN soil total nitrogen, NN soil nitrate nitrogen, AP soil available
phosphorus, EK soil extractable potassium, OM soil organic matter, CV coefficient of variation
123
Precision Agric (2009) 10:471–487
479
Table 2 Correlation coefficients between crop nutrients and Quickbird spectral data, OSAVI and wheat
yield data
Crop nutrients
Wheat yield
(kg ha-1)
Band1
Band2
Band3
Band4
OSAVI
April-AP (mg kg-1)
0.43
-0.44
-0.45
-0.45
0.56
0.51
April-TN (%)
0.30
-0.23
-0.22
-0.26
0.36
0.31
-0.31
April-EK (mg kg-1)
-0.02
0.31
0.35
0.30
-0.31
June-AP (mgkg-1)
0.24
-0.39
-0.44
-0.41
0.47
0.45
June-TN (%)
0.37
-0.39
-0.41
-0.41
0.51
0.47
June-OM (%)
0.41
-0.42
-0.44
-0.44
0.54
0.50
Wheat yield (kg ha-1)
1.00
-0.55
-0.64
-0.70
0.75
0.76
Note: TN soil total nitrogen, NN soil nitrate nitrogen, AP soil available phosphorus, EK soil extractable
potassium, OM soil organic matter
June TN and April TN. Based on the strong correlation with yield, the soil AP and EK on
April 4 and OM on June 16 were selected as variables for kriging.
Kriging of crop nutrients
The spatial structure of soil AP and EK on April 4 and OM on June 16 was evaluated by
isotropic variogram models. The experimental variograms and the fitted models for the
three soil variables and wheat yield are shown in Fig. 2. The model types and their
parameters are given in Table 3. The degree of spatial dependence was determined by the
nugget: sill ratio, which represented the percentage of unexplained variance (nugget) to the
total variation, expressed by nugget ? spatially correlated variance (the sill). A nugget: sill
ratio \25% indicates strong spatial dependence, whereas one [75% indicates weak spatial
dependence (Cambardella et al. 1994). In all cases the soil properties show moderate to
Fig. 2 Experimental variogram (symbols) and fitted model (solid line) of soil: (a) OM, (b) AP, (c) EK and
(d) wheat yield
123
480
Precision Agric (2009) 10:471–487
Table 3 Isotropic variogram model parameters for crop nutrients and wheat yield
Nugget (c0) Spatially dependent c0/(c0 ? c1) Range (m) RSME
component (c1)
Crop nutrients
Model
June-OM (%)
Spherical
0.0068
0.0312
0.1789
38.38
April-AP (mg kg-1)
Spherical
3.117
1.947
0.6155
43.15
0.9644
April-EK (mg kg-1)
Spherical
1.0050
196.1
360.1
0.3526
22.67
1.0070
Wheat yield (kg ha-1) Spherical 5654.6
4324.0
0.5667
45.14
1.0040
Note: AP soil available phosphorus, EK soil extractable potassium, OM soil organic matter
strong spatial dependence (Table 3). The ranges of spatial dependence vary between 17
and 41 m (Table 3).
Based on the models and parameters given in Table 3, ordinary kriging was applied to
the three soil properties AP, AK, OM and wheat yield. The prediction grid was
0.6 9 0.6 m2, which was the same as the resolution of Quickbird OSAVI. This enabled the
plots to be divided into several classes to determine homogenous zones. The contour maps
obtained for the four variables are shown in Fig. 3.
It can be seen from Fig. 3 that large values of OM and AP are in the middle-northern part
of the study area, and small values occur in the middle. The large values of EK are in the
(a) OSAVI
(a)
(c)
(b) Soil OM (%)
0.31-0.40
1.49 1.61
0.40-0.45
1.61 1.72
0.45-0.50
1.72 1.84
0.50-0.55
1.84 1.96
0.55-0.60
1.96 2.08
0.60-0.71
2.08 2.20
(b)
(e)
(d)
(c) Soil AP (mg·kg
-1
)
(d) Soil EK (mg·kg
-1
)
(e) Wheat Yield (kg·ha
4.28-5.02
115.01-129.16
3727.11-3994.78
5.02-5.76
129.16-143.31
3994.78-4262.34
5.76-6.50
143.31-157.46
4262.34-4529.90
6.50-7.24
157.46-171.61
4529.90-4797.47
7.24-7.98
171.61-185.76
4797.47-5065.02
7.98-8.73
185.76-199.91
5065.02-5332.58
-1
)
Fig. 3 (a) Map of OSAVI, and kriged maps of: (b) soil organic matter (OM), (c) soil available P (AP),
(d) extractable K (EK) and (e) wheat yield
123
Precision Agric (2009) 10:471–487
481
middle and small values are in the south of the study area. The OSAVI image is similar to
the map of wheat yield, with large values in the NW and SW of the study site, and small
values in the middle. The soil OM and AP also have a similar pattern of variation to those of
yield and OSAVI. The results of the correlation analysis in Table 2 show that OSAVI has
moderate to strong correlations with the interpolated values of soil AP, OM, EK and wheat
yield; the correlation coefficients are 0.62, 0.53, -0.47 and 0.72, respectively. As an
important index to reflect crop cover and growth, OSAVI was used together with the kriged
values of OM, AP, EK and wheat yield for fuzzy k-means cluster analysis to identify areas
that are homogenous in terms of landscape and soil conditions for site-specific management.
Determining the optimal number of MZs
The OSAVI and kriged values of soil AP, EK, OM and wheat yield (Fig. 3) were analyzed
with the fuzzy k-means algorithm to assign each pixel of 0.6 9 0.6 m2 to an appropriate
class based on the minimization of the generalized least squares error function of each
pixel. We considered six clusters to be the maximum number of practical management
zones. To determine the optimal number of classes we increased the number of classes one
at a time from two to six. The functions FPI and MPE were used to determine the optimum
number of clusters. The results from the two indices are plotted in Fig. 4. The optimal
number of clusters for each index occurs when the index is at the minimum. Figure 4
shows that FPI and MPE had the same change in trend with an increase in cluster number,
and the minimum FPI and MPE were obtained with 3 clusters for our study area.
This indicates that the sum of squares for members within a cluster is minimized while
the sum of squares between members of different clusters is maximized. The final decision
of how many clusters to use for creating management zones when the two cluster validity
indices are dissimilar may require additional verification. For example, when developing
productivity zones, the optimal number of clusters might be determined by comparing the
within-zone variation in yield with the increase in the number of clusters (Fridgen et al.
2004).
0.55
0.60
0.55
0.50
0.50
0.40
MPE
FPI
0.45
0.45
0.40
0.35
0.35
0.30
0.30
2
3
4
5
6
Number of clusters
Soil and yield based MPE
OSAVI based MPE
Soil, yield and OSAVI based MPE
Soil and yield based FPI
OSAVI based FPI
Soil, yield and OSAVI based FPI
Fig. 4 Graphs of fuzzy performance index (FPI) and modified partition entropy (MPE) plotted against
number of clusters based on the results of fuzzy k-means classification using different combinations of data
(soil, yield and OSAVI)
123
482
Precision Agric (2009) 10:471–487
Management zone delineation and evaluation
Based on the optimal number of classes, three MZ maps were generated using different
data; soil and yield, RS data and RS, soil and yield. Figure 5 shows the resulting maps. The
Kappa coefficient was then used to compare the homogeneity of the zones in the three
different MZ maps. The results show that zones based on soil and yield (Fig 5a), and soil,
yield and RS (Fig. 5b) data are the most similar; the similarity between Fig. 5a and c is the
greatest with a Kappa coefficient 0.91. The Kappa coefficient based on a comparison of the
zones in Fig. 5a and b was 0.16. The results indicate a poor agreement between the zones
in Fig. 5 a and b, and for Fig. 5b and c.
Within each class, crop and yield parameters could be quantified, analyzed and compared over other zones. The statistical analyses indicate significant differences between the
crop nutrients and yield in each zone of three maps. The MZ 3 had the largest nutrient
(a)
(c)
(b)
Management zone 1
Management zone 2
Management zone 3
(a) MZ map based on soil and yield data; (b) MZ map based on RS data; (c) MZ map based on soil, yield and RS data
Fig. 5 Maps of management zones generated by fuzzy k-means classification using different combinations
of data (soil, yield and OSAVI)
Table 4 Coefficients of variance for MZs based on different methods of generating the fuzzy classes by
fuzzy k-means
Method of MZ
generation
Soil and yield based
MZ
RS (OSAVI) based
MZ
Soil, yield and RS
based MZ
MZ
OM (%)
AP
(mg kg-1)
EK
(mg kg-1)
OSAVI
Mean
CV
(%)
Mean
Mean
CV
(%)
Mean
CV
(%)
Mean
1
1.69
4.67
5.17
7.88
162.1
6.50
0.62
10.83
4192.6
6.29
2
1.80
3.78
6.31
6.71
140.8
7.99
0.71
6.79
4616.3
4.94
3
1.98
6.38
7.91
5.23
147.0
5.41
0.74
6.36
4926.7
3.37
1
1.69
4.04
5.43
16.06
159.8
6.61
0.53
8.95
4016.9
6.33
2
1.77
7.22
6.06
15.58
150.7
9.94
0.66
4.41
4447.1
6.52
3
1.86
6.53
6.96
12.36
141.8
6.74
0.74
7.82
4760.0
10.26
1
1.69
4.80
5.21
9.21
162.3
6.44
0.61
10.69
4185.6
6.16
2
1.80
3.82
6.27
6.90
140.7
7.96
0.71
5.51
4617.8
4.87
3
1.97
6.40
7.88
5.46
146.8
5.42
0.74
6.13
4922.4
3.36
CV
(%)
Yield
(kg ha-1)
CV
(%)
Note: CV coefficient of variation, MZ management zone, MZ 1 management zone1, MZ 2 management
zone2, MZ 3 Management zone3, AP soil available phosphorus, EK soil extractable potassium, OM soil
organic matter
123
483
CV (%)
Precision Agric (2009) 10:471–487
CV (%)
MZ 1
CV (%)
MZ 2
MZ 3
CV for Whole study site
CV for OSAVI based MZ
CV for Soil and yield based MZ
CV for Soil, yield and OSAVI based MZ
Fig. 6 Histograms of CV for the whole study site and for the three MZs based on different combinations of
data (soil, yield and OSAVI)
123
484
Precision Agric (2009) 10:471–487
status and potential crop productivity, whereas MZ 1 had the lowest. Table 4 shows the
results of analyzing the variation in soil properties, yield and OSAVI in all three zones for
the three different maps (Fig. 5). Figure 6 shows the histograms of the CVs for all variables used in clustering for the three MZ maps. From this figure, we can see that the CV for
soil AP decreases dramatically in all MZs for the three maps. Although it increases for soil
EK in MZ 2 of Fig. 5b together with OSAVI in MZ 1 of Fig. 5a and c, the CV for wheat
yield and soil OM decrease to different degrees in all MZs.
To evaluate the three methods of delineating MZs, the CVs for soil, wheat yield and RS
data for the whole study site (before interpolation) were compared with those for each zone
and in the three MZ maps (after interpolation). The results of the percentage decrease in
CV for the whole site and for the zones are given in Table 5. This table shows that the CVs
of crop OM and EP decrease considerably in the three MZs where EK increases by 4.94%
in MZ 2 and decreases by 30.2% and 28.8% for MZ 1 and MZ 3, respectively, of the RSbased map (Fig. 5b). The CVs for OSAVI drops most in MZs of the RS-based map
(Fig. 5b). It increases in MZ 1 and decreases in other two zones of the soil-yield based and
soil-yield-RS based maps (Fig. 5a, c). The results also show that the CVs for wheat yield in
the three zones for all maps decrease, especially for the soil and yield-based map and soil,
yield and RS-based map. They decrease by 18.97%, 36.46%, 56.60% for the soil and yieldbased map (Fig. 5a) and by 20.69%, 37.25%, 56.78% for the soil, yield and RS-based map
(Fig. 5c). In the RS based map yield CVs decrease by 18.49%, 16.11% and 31.43% for the
three zones, respectively.
Discussion and application of the method
By contrast with traditional VRT decisions based on soil sampling and yield data, remotely
sensed imagery can provide within-season monitoring to aid management of the growing
crop. Our study proposed optimal procedures for delineating MZs with Quickbird imagery
on wheat at the heading stage. In addition, the method is reliable compared with two other
methods to delineate MZs based on soil and yield, and soil, yield and RS data. The RS
method for MZ delineation described in this research is based on one field and this needs to
Table 5 Percentage difference between the CV for soil, RS and wheat yield data for the whole site before
interpolation and after classification of the interpolated data
Method of MZ
generation
Soil and yield
based MZ
RS based MZ
Soil, yield and RS
based MZ
MZ
OM (%)
AP
(mg kg-1)
EK
(mg kg-1)
OSAVI
Yield
(kg ha-1)
1
38.52
66.42
31.31
-3.35
18.97
2
50.31
71.40
15.61
35.14
36.46
3
16.10
77.69
42.83
39.31
56.60
1
21.97
31.55
30.20
14.57
18.49
2
5.02
33.57
-4.94
57.92
16.11
3
11.65
47.33
28.81
56.25
31.43
1
36.82
60.74
31.94
-2.00
20.69
2
49.75
70.57
15.88
47.42
37.25
3
15.87
76.69
42.69
41.48
56.78
Note: CV coefficient of variation, MZ management zone, MZ 1 management zone1, MZ 2 management
zone2, MZ 3 management zone3, AP soil available phosphorus, EK soil extractable potassium, OM soil
organic matter
123
Precision Agric (2009) 10:471–487
485
be extended by further intensive and in-depth research of a larger area based on RS
imagery with a different spatial resolution. In addition, there should be further studies to
include other environmental features that influence crop growth, such as irrigation water,
plant diseases and insect pests. The application and use of this method for farm managers
may require help from professional personnel for RS data processing and analysis.
Therefore, it is necessary to develop simple software for users to popularize this method in
the future.
Conclusion
The spatial variation in soil, yield and RS data were well represented using geostatistics.
The fuzzy k-means clustering approach was then used to classify the kriged soil, yield and
RS values to create homogeneous management zones. For the experimental area, Quickbird imagery confirmed that the variation in wheat growth estimated by the vegetation
index OSAVI was similar to the variation in the soil and yield data. Statistical analyses
showed that the Quickbird OSAVI data can not only reflect the spatial variation in wheat
growth during the early growing stage, but also the spatial variation in soil properties and
yield. Therefore, it could be used to provide a valuable diagnostic to guide the generation
of MZs. Satellite remote sensing shows promise as a tool for assessing the variation in soil
properties and yield over arable fields. The results of this study suggest that management
zone delineation using RS data was reliable and feasible.
Acknowledgements This work was financially supported by 863 Program (2006AA10A302,
2006AA12Z138, 2006AA210108) from the National High-Tech R&D Program of China, the 973 Program
from the State Basic Research Development Program of China (No. 2007CB714406), National Natural
Science Foundation of China (40701120), and Beijing Municipal Natural Science Foundation (4092017).
References
Ahn, C. W., & Mezzich, J. E. (1989). PROPOV-K: a FORTRAN program for computing a kappa coefficient
using a proportional overlap procedure. Computers and Biomedical Research, 22, 415–423. doi:
10.1016/0010-4809(89)90035-9.
Ashcroft, P. M., Catt, J. A., Curran, P. J., Munden, J., & Webster, R. (1990). The relation between reflected
radiation and yield on the broadbalk winter wheat experiment. International Journal of Remote
Sensing, 10, 1821–1836.
Beatty, M. K., Johannsen, C. J., & Ross, K. (2000). In situ detection of leaf chlorophyll content and leaf
nitrogen content in Zea mays L. with remote sensing. In 2000 annual meeting abstracts, Minneapolis,
MN. ASA, CSSA, and SSSA, Madison, WI, pp. 281.
Bezdek, J. C. (1981). Pattern recognition with fuzzy objective function algorithms. New York: Plenum Press.
Blackmer, A. M., & White, S. E. (1998). Using precision farming technologies to improve management of
soil and fertilizer nitrogen. Australian Journal of Agricultural Research, 49, 555–564.
Blackmer, T. M., Schepers, J. S., Varvel, G. E., & Meyer, G. E. (1996). Analysis of aerial photography for
nitrogen stress within corn fields. Agronomy Journal, 88, 729–733.
Blackmore, S. (2000). The interpretation of trends from multiple yield maps. Computers and Electronics in
Agriculture, 26, 37–51. doi:10.1016/S0168-1699(99)00075-7.
Cambardella, C. A., Moorman, T. B., Novak, J. M., Parkin, T. B., Kalen, D. L., Tuco, R. F., et al. (1994).
Field-scale variability of soil properties in central Iowa soils. Soil Science Society of America Journal,
58, 1501–1511.
de Gruijter, J. J., & McBratney, A. B. (1988). A modified fuzzy k means for predictive classification. In H.
H. Bock (Ed.), Classification and related methods of data analysis (pp. 97–104). Amsterdam: Elsevier
Science.
123
486
Precision Agric (2009) 10:471–487
Diker, K., Heermann, D. F., & Brodahl, M. K. (2004). Frequency analysis of yield for delineating yield
response zones. Precision Agriculture, 5, 435–444. doi:10.1007/s11119-004-5318-9.
Edward, H. I., & Srivastava, R. M. (1989). Applied Geostatistics (pp. 141–163). Oxford, NY: Oxford
University Press.
ENVI 4.1. (2003). ENVI user’s guide. Boulder: ITT Industries, Inc.
Erik, N. (1996). Use of the weighted Kappa coefficient in classification error assessment of thematic maps.
International Journal of Geographical Information Science, 10(5), 591–603. doi:10.1080/
02693799608902099.
ESRI. (2001). Using ArcGIS geostatistical analyst. Redlands, CA: ESRI, Inc.
Farrand, W. H., Singer, R. B., & Merenyi, E. (1994). Retrieval of apparent surface reflectance from AVIRIS
data - a comparison of empirical line, radiative transfer, and spectral mixture methods. Remote Sensing
of Environment, 47, 311–321. doi:10.1016/0034-4257(94)90099-X.
Fleming, K. L., Heermann, D. F., & Westfall, D. G. (2004). Evaluating soil color with farmer input and
apparent soil electrical conductivity for management zone delineation. Agronomy Journal, 96, 1581–
1587.
Fleming, K. L., Westfall, D. G., & Wausch, W. C. (2001). Evaluating management zone technology and grid
soil sampling for variable rate nitrogen application. In precision agriculture [CD-ROM]. Proceedings
of the 5th international conference, Minneapolis, MN, ASA, CSSA, and SSSA, Madison, WI, 16–19.
Flowers, M., Weisz, R., & White, J. G. (2005). Yield-based management zones and grid sampling strategies:
Describing soil test and nutrient variability. Agronomy Journal, 97, 968–982.
Fraisse, C. W., Sudduth, K. A., & Kitchen, N. R. (2001). Delineation of site-specific management zones by
unsupervised classification of topographic attributes and soil electrical conductivity. Transactions of
the ASAE, 44, 155–166.
Franzen, D. W., Halvorson, A. D., & Hoffman,V. L. (2000). Management zones for soil N and P levels in
the Northern Great Plains. In P. C. Robert et al. (Eds.), Proceedings of the 5th international conference
on precision agriculture, Bloomington, MN [CD-ROM]. ASA, CSSA, and SSSA, Madison, WI.
Fridgen, J. J., Kitchen, N. R., Sudduth, K. A., Drummond, S. T., Wiebold, W. J., & Fraisse, C. W. (2004).
Management zone analyst (MZA): Software for subfield management zone delineation. Agronomy
Journal, 96, 100–108.
Gao, X. Z., Hu, K. L., Guo, Y., Li, B. G., Ma, Y. T., Du, S., et al. (2002). Spatial variability of soil nutrients,
crop yield and site-specific fertilizer management. Scientia Agricultura Sinica, 35, 660–666 (in
Chinese).
Gotway, C. A., Fergusong, R. B., & Hergert, G. W. (1996). The effects of mapping scale on variable-rate
fertilizer recommendations for corn. In P. C. Robert, R. H. Rust, & W. E. Larson (Eds.), Precision
agriculture, Proceedings of the 3rd international conference (pp. 321–330), Minneapolis, MN, ASA,
CSSA, and SSSA, Madison, WI, 23–26.
Guo, Y. F., Cui, K. Z., Zhang, L. J., Wu, Z. R., Fen, X. L., Zhen, B. F., et al. (2004). Dynamic study of soil
furrow layer nutrient on south of Tianjin. Science and Technology of Tianjin Agricultural and Forestry,
177, 31–33 (in Chinese).
Hu, K. L., Li, B. G., Lin, Q. M., Li, G. T., & Chen, D. L. (1999). Spatial variability of soil nutrient in wheat
field. Transactions of the Chinese Society Agricultural Engineering, 15(3), 33–38 (in Chinese).
Johannsen, C. J., & Barney, T. W. (1981). Remote sensing applications for resource management. Journal of
Soil and Water Conservation, 36, 128–131.
Khosla, R., Fleming, K., Delagado, J. A., Shaver, T. M., & West-fall, D. G. (2002). Use of site-specific
management zones to improve nitrogen management for precision agriculture. Journal of Soil Water
Conservation, 57(6), 513–518.
Koch, B., & Khosla, R. (2003). The role of precision agriculture in cropping systems. Journal of Crop
Production, 8, 361–381. doi:10.1300/J144v09n01_02.
Koch, B., Khosla, R., Frasier, W. M., Westfall, D. G., & Inman, D. (2004). Economic feasibility of variablerate nitrogen application utilizing site-specific management zones. Agronomy Journal, 96, 1572–1580.
Li, X., Pan, Y. C., Zhao, C. J., Wang, J. H., Bao, Y. S., & Wang, J. D. (2005). Delineation and scale effect of
precision agriculture management zones using yield monitor data over four years. Scientia Agricultura
Sinica, 38, 1825–1833 (in Chinese).
Liang, H. X., Zhao, C. J., Huang, W. J., Liu, L. Y., Wang, J. H., & Ma, Y. H. (2005).Variable-rate nitrogen
application algorithm based on canopy reflected spectrum and its influence on wheat. In Multispectral
and hyperspectral remote sensing instruments and applications II, Proceedings of international society
for optical engineering, (SPIE), 2005 (Vol. 5655, pp. 522–530). Bellingham, WA.
McMurtrey, III, J. E., Chappelle, E. W., Kim, M. S., Meisinger, J. J., & Corp, L. A. (1994). Distinguishing
nitrogen fertilization levels in field corn (Zea mays L.) with actively induced fluorescence and passive
reflectance measurements. Remote Sensing of the Environment, 47, 36–44.
123
Precision Agric (2009) 10:471–487
487
Minasny, B. (1999). A computer program for fuzzy k-means analysis. Updated July 1, 2002, from
http://www.usyd.edu.au/su/agric/acpa/fkme/FuzME.html.
Mortensen, D. A., Johnson, G. A., Wyse, D. Y., & Martin, A. R. (1995). Managing spatially variable weed
populations. In P. C. Robert, R. H. Rust, & W. E. Larson (Eds.), Proceedings of the 2nd international
conference on site specific management for agricultural systems (pp. 397–415). Minneapolis, MN.
Madison, WI: American Society for Agronomy.
Nolan, S. C, Goddard, T. W, Lohstraeter, G., & Coen, G. M. (2000). Assessing management units on rolling
topography. In P. C. Robert, R. H. Rust, & W. E. Larson (Eds.), Proceedings of the 5th international
conference on precision and other resource management. CD-ROM. ASA/CSSA/SSSA, Madison, WI,
USA.
Pannatier, Y. (1996). Variowin Software for spatial data analysis in 2D. New York: Springer.
Rodrigo, A. O., & Oscar, A. S. (2007). Determination of management zones in corn (Zea mays L.) based on
soil fertility. Computers and Electronics in Agriculture, 58, 49–59. doi:10.1016/j.compag.2006.12.011.
Rondeaux, G., Steven, M., & Baret, F. (1996). Optimization of soil adjusted vegetation indices. Remote
Sensing of Environment, 55, 95–107. doi:10.1016/0034-4257(95)00186-7.
Roubens, M. (1982). Fuzzy clustering algorithms and their cluster validity. European Journal of Operational Research, 10(3), 294–301.
Scharf, P. C., & Lory, J. A. (2002). Calibrating corn color from aerial photographs to predict sidedress N
need. Agronomy Journal, 94, 397–404.
Schueller, J. K. (1992). A review and integrating analysis of spatially-variable control of crop production.
Fertilizer Resolution, 33, 1–34. doi:10.1007/BF01058007.
Searcy, S. W. (1995). Engineering systems for site-specific management: Opportunities and limitations. In
Proceedings of site-specific management for agriculture system (pp. 603–608). Minneapolis, MN,
ASA-CSSA-SSSA, Madison,WI.
Song, X. Y., Wang, J. H., Xue, X. Z., Liu, L. L., Chen, L. P., & Zhao, C. J. (2004). Assessment of the
influence of soil nitrogen supplies and variable fertilization on winter wheat growth condition using
airborne hyperspectral image. Transactions of the Chinese Society of Agricultural Engineering, 20(4),
45–49 (in Chinese).
Taylor, R. K., Kluitenberg, G. J., Schrock, M. D., Zhang, N., Schmidt, J. P., & Havlin, J. L. (2001). Using
yield monitor data to determine spatial crop production potential. Transactions of the ASAE, 44, 1409–
1414.
Weisz, R., Fleischer, S.J., & Smilowitz, Z. (1996). Site-specific integrated pest management for high-value
crops: impact on potato pest management. Journal of Economic Entomology, 89, 501D–509.
Wright, D. L., Rasmussen, V. P., Baker, D. J. (2002). Using remote sensing to manage wheat grain protein.
NASA SSC Report, ARC-USU-001-02. Affiliated Research Center Final Reports [CD-ROM]. Earth
Science Applications Directorate, National Aeronautics and Space Administration, John C. Stennis
Space Center, Mississippi.
Xue, X. Z., Chen, L. P., Sun, Z. G., & Zhao, C. J. (2004). Results of variable-rate nitrogen fertilization of
winter wheat based on soil fertility and yield map. Transactions of the Chinese Society of Agricultural
Engineering, 20(3), 59–62 (in Chinese).
Zhang, R. D. (2005a). Theory and application of spatial variability. Beijing: Science Press (in Chinese).
Zhang, X. F. (2005b). Chemical analysis for agricultural (pp. 158–169). Beijing: Chemical Industry Press
(in Chinese).
Zhang, S. H., Ma, C. L., Li, W., & Xu, Y. (2006). Experimental study on the influence of variable rate
fertilization on Maize yield and soil nutrients. Transactions of the Chinese Society of Agricultural
Engineering, 22(8), 64–67 (in Chinese).
123