organic compounds
Acta Crystallographica Section E
Structure Reports
Online
ISSN 1600-5368
6-Amino-5-(1-amino-2,2-dicyanovinyl)3,3a,4,5-tetrahydro-2H-indene-4-spiro10 -cyclopentane-3a,7-dicarbonitrile–
thiophene-2-carbaldehyde (1/0.5)
Experimental
Crystal data
Abdullah M. Asiria and Seik Weng Ngb*
a
Department of Chemistry, Faculty of Science, King Abdul Aziz University, PO Box
80203, Jeddah, Saudi Arabia, and bDepartment of Chemistry, University of Malaya,
50603 Kuala Lumpur, Malaysia
Correspondence e-mail: seikweng@um.edu.my
Received 19 August 2010; accepted 26 August 2010
Key indicators: single-crystal X-ray study; T = 100 K; mean (C–C) = 0.006 Å;
disorder in main residue; R factor = 0.074; wR factor = 0.216; data-to-parameter
ratio = 15.6.
In each of the two independent indene-4-spiropentane
molecules in the asymmetric unit of the title 2:1 adduct,
C19H18N60.5C5H4OS, the cyclohexene ring adopts a half-chair
conformation and the cyclopentene and cyclopentane rings
adopt envelope conformations. The mean plane through the
cyclohexene/cyclopentene fused system is aligned at a
dihedral angle of 77.9 (1) with respect to the mean plane
through the cyclopentane ring in one molecule and 87.0 (1) in
the other. In the crystal, adjacent indene-4-spiropentane
molecules are linked by N—H N hydrogen bonds into a
three-dimensional network. The spaces within the network are
occupied by the thiophene-2-carbaldehyde molecules. The
thiophene-2-carbaldehyde unit is disordered over two positions of equal occupancy. The crystal studied was found to be a
non-morohedral twin with two minor twin components of 18.4
and 9.7%.
= 89.879 (2)
V = 1953.1 (4) Å3
Z=4
Mo K radiation
= 0.14 mm1
T = 100 K
0.45 0.05 0.05 mm
C19H18N60.5C5H4OS
Mr = 386.46
Triclinic, P1
a = 12.0181 (14) Å
b = 13.8109 (15) Å
c = 13.9000 (15) Å
= 60.703 (1)
= 77.841 (2)
Data collection
Bruker SMART APEX
diffractometer
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
Tmin = 0.942, Tmax = 0.993
18784 measured reflections
8916 independent reflections
5141 reflections with I > 2(I)
Rint = 0.068
Refinement
R[F 2 > 2(F 2)] = 0.074
wR(F 2) = 0.216
S = 1.02
8916 reflections
571 parameters
94 restraints
H-atom parameters constrained
max = 0.59 e Å3
min = 0.50 e Å3
Table 1
Hydrogen-bond geometry (Å, ).
D—H A
D—H
H A
D A
D—H A
N2—H2n1 N1i
N3—H3n1 N11ii
N3—H3n2 N12ii
N8—H8n1 N7iii
N8—H8n2 N4iv
N9—H9n1 N5
N9—H9n2 N6
0.86
0.86
0.86
0.86
0.86
0.86
0.86
2.23
2.28
2.29
2.45
2.31
2.39
2.35
2.909
2.970
3.042
2.921
3.006
3.098
3.178
136
138
147
115
138
139
163
(4)
(4)
(4)
(4)
(4)
(4)
(4)
Related literature
Symmetry codes: (i) x þ 1; y þ 1; z þ 1; (ii) x; y 1; z; (iii) x; y þ 2; z þ 1;
(iv) x; y þ 1; z þ 2.
For our report of the condensation of cyclopentylidenemalononitrile and thiophene-2-carbaldehyde to form 2,5bis(thienylidene)-1-dicyanomethylene-cyclopentane, a purplecolored compound suitable for application as a dye, see: Asiri
(2003). For a related structure, see: Nesterov & Viltchinskaia
(2000). For the treatment of twinned diffraction data, see:
Spek (2009).
Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT
(Bruker, 2009); data reduction: SAINT; program(s) used to solve
structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine
structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XSEED (Barbour, 2001); software used to prepare material for
publication: publCIF (Westrip, 2010).
We thank King Abdul Aziz University and the University of
Malaya for supporting this study.
Supplementary data and figures for this paper are available from the
IUCr electronic archives (Reference: XU5020).
o2484
Asiri and Ng
doi:10.1107/S1600536810034434
Acta Cryst. (2010). E66, o2484–o2485
organic compounds
References
Asiri, A. M. (2003). Bull. Korean Chem. Soc. 24, 426–430.
Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
Bruker (2009). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin,
USA.
Acta Cryst. (2010). E66, o2484–o2485
Nesterov, V. N. & Viltchinskaia, E. A. (2000). Acta Cryst. C56, 872–873.
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany.
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122.
Spek, A. L. (2009). Acta Cryst. D65, 148–155.
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
Asiri and Ng
C19H18N60.5C5H4OS
o2485
supplementary materials
supplementary materials
Acta Cryst. (2010). E66, o2484-o2485
[ doi:10.1107/S1600536810034434 ]
6-Amino-5-(1-amino-2,2-dicyanovinyl)-3,3a,4,5-tetrahydro-2H-indene-4-spiro-1'-cyclopentane3a,7-dicarbonitrile-thiophene-2-carbaldehyde (1/0.5)
A. M. Asiri and S. W. Ng
Comment
We have previously reported the condensation of cyclopentylidenemalononitrile and thiophene-2-carbaldehyde to form
2,5-bis(thienylidene)-1-dicyanomethylene-cyclopentane, a purple-colored compound suitable for application as a dye (Asiri,
2003). For reasons that we are not clear of, our attempted synthesis gave only colorless crystals. We examined a plate-like
specimen and identified it as 6-amino-5,5,7-tricyano-3,3a,4,5- tetrahydro-2H-indene-4-spirocyclo-pentane, whose structure
has already been reported (Nesterov & Viltchinskaia, 2000). We identified a prismatic specimen as the title 1: 0.5 co-crystal
(Scheme I, Fig. 1); the second component is unchanged thiophene-2-carbaldehyde. The first component differs from the
reported compound in having an aminodicyanovinyl group (along with a methine hydrogen) in place of the two cyano groups
in the 5-position. Additionally, the compound has another cyano group in the 3a position.
Experimental
Cyclopentylidenemalononitrile (0.13 g, 1 mmol) and thiophene-2-carbaldehyde (0.22 g, 2 mmol) were heated in an oil bath
for 6 h. Ethanol was added to break up the solid material. The product was collected and recrystallized from acetic acid.
Refinement
Carbon-bound H-atoms were placed in calculated positions (C—H 0.95 to 0.99 Å) and were included in the refinement in
the riding model approximation, with U(H) set to 1.2U(C). The amino H-atoms were similarly positioned (N–H 0.86 Å) by
rotating them; their temperature factors were tied by a factor of 1.2. Modeling the amino group as if it was a methyl group
but setting the occupancy factor of one of the three H-atoms to zero gave a satisfactory hydrogen bond scheme except for
the H2n2 and H3n2 atoms, which were 1.82 Å apart.
The thiophene-2-carbaldehyde molecule is disordered over two positions; as the disorder refined to nearly 1:1, the occupancy of each component was set to 0.5. The sulfur–carbon distances were restrained to 1.70±0.01 Å and the oxygen–carbon
distances to 1.25±0.01 Å. The excyclic carbon–carbon distances were restrained to 1.50±0.01 Å and the endocyclic ones to
1.35±0.01 Å. All atoms of each component were restrained to lie on a plane. The temperature factors of C41' were set to
those of S1, and that of S1' to those of C41 as the pair of atoms are close to each other. The anisotropic temperature factors
of the disordered atoms were restrained to be nearly isotropic. The primed carbon atoms were set to those of the unprimed
ones; the anisotropic temperature factors of these carbon atoms were restrained to be nearly isotropic.
The structure is a non-meohedrally twinned structure with two minor twin components of 18.5 and 9.7%. The twin
domains were identified by the use of PLATON (Spek, 2009). The twinned nature led to a somewhat large weighting scheme.
sup-1
supplementary materials
Figures
Fig. 1. Thermal ellipsoid plot (Barbour, 2001) of the asymmetric unit of the
C19H18N6.0.5C5H4OS co-crystal at the 70% probability level; hydrogen atoms are drawn as
spheres of arbitrary radius.
6-Amino-5-(1-amino-2,2-dicyanovinyl)-3,3a,4,5-tetrahydro-2H-indene- 4-spiro-1'-cyclopentane-3a,7dicarbonitrile–thiophene-2-carbaldehyde (1/0.5)
Crystal data
C19H18N6·0.5C5H4OS
V = 1953.1 (4) Å3
Mr = 386.46
Z=4
Triclinic, P1
F(000) = 812
Hall symbol: -P 1
Dx = 1.314 Mg m−3
a = 12.0181 (14) Å
Mo Kα radiation, λ = 0.71073 Å
b = 13.8109 (15) Å
µ = 0.14 mm−1
T = 100 K
Prism, colorless
0.45 × 0.05 × 0.05 mm
c = 13.9000 (15) Å
α = 60.703 (1)°
β = 77.841 (2)°
γ = 89.879 (2)°
Data collection
Bruker SMART APEX
diffractometer
Radiation source: fine-focus sealed tube
8916 independent reflections
graphite
5141 reflections with I > 2σ(I)
Rint = 0.068
ω scans
θmax = 27.5°, θmin = 1.7°
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
Tmin = 0.942, Tmax = 0.993
18784 measured reflections
h = −15→15
k = −17→17
l = −18→18
Refinement
R[F2 > 2σ(F2)] = 0.074
Primary atom site location: structure-invariant direct
methods
Secondary atom site location: difference Fourier map
Hydrogen site location: inferred from neighbouring
sites
wR(F2) = 0.216
H-atom parameters constrained
Refinement on F2
Least-squares matrix: full
S = 1.02
8916 reflections
sup-2
w = 1/[σ2(Fo2) + (0.1073P)2 + 0.3194P]
where P = (Fo2 + 2Fc2)/3
(Δ/σ)max = 0.001
supplementary materials
571 parameters
Δρmax = 0.59 e Å−3
94 restraints
Δρmin = −0.50 e Å−3
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
N1
N2
H2N1
H2N2
N3
H3N1
H3N2
N4
N5
N6
N7
N8
H8N1
H8N2
N9
H9N1
H9N2
N10
N11
N12
C1
C2
H2A
H2B
C3
H3A
H3B
C4
H4
C5
C6
C7
C8
H8
C9
C10
H10A
H10B
C11
H11A
H11B
C12
x
y
z
Uiso*/Ueq
0.4315 (3)
0.3308 (2)
0.3882
0.2992
0.0952 (2)
0.0890
0.1512
0.0331 (3)
0.1735 (3)
0.2511 (3)
0.1317 (3)
0.0847 (2)
0.0700
0.0894
0.2564 (2)
0.2118
0.2489
0.1724 (3)
0.1138 (3)
0.2061 (3)
0.1173 (3)
0.0404 (3)
−0.0368
0.0323
0.1023 (3)
0.0473
0.1441
0.1835 (3)
0.2238
0.1931 (3)
0.2654 (3)
0.2539 (3)
0.1539 (3)
0.1863
0.0552 (3)
−0.0223 (3)
−0.0112
−0.0036
−0.1455 (3)
−0.1788
−0.1941
−0.1362 (4)
0.5673 (3)
0.4683 (2)
0.4725
0.4002
0.3434 (2)
0.2827
0.3434
0.2262 (2)
0.5862 (3)
0.8177 (2)
1.0660 (3)
0.9640 (2)
0.9439
0.9057
0.8396 (2)
0.7820
0.8475
0.7429 (3)
1.0999 (3)
1.3168 (2)
0.7121 (3)
0.7911 (3)
0.7515
0.8573
0.8262 (3)
0.8245
0.9023
0.7411 (3)
0.7320
0.6794 (3)
0.5934 (3)
0.5343 (3)
0.5441 (3)
0.5919
0.6065 (3)
0.5370 (3)
0.5705
0.4590
0.5403 (3)
0.6042
0.4702
0.5532 (4)
0.3804 (3)
0.6776 (3)
0.6262
0.7194
0.8014 (3)
0.8652
0.7514
1.0946 (3)
0.9363 (3)
0.5964 (3)
0.3768 (3)
0.6749 (3)
0.6288
0.7372
0.8127 (3)
0.8678
0.7491
1.1069 (3)
0.9271 (3)
0.5990 (3)
0.5405 (3)
0.4653 (3)
0.4857
0.4751
0.3422 (3)
0.2990
0.3028
0.3552 (3)
0.2941
0.4618 (3)
0.5125 (3)
0.6275 (3)
0.7069 (3)
0.7323
0.6523 (3)
0.6247 (3)
0.5416
0.6567
0.6799 (3)
0.6259
0.7057
0.7792 (4)
0.0226 (7)
0.0185 (7)
0.022*
0.022*
0.0188 (7)
0.023*
0.023*
0.0251 (7)
0.0265 (8)
0.0208 (7)
0.0232 (7)
0.0166 (6)
0.020*
0.020*
0.0167 (6)
0.020*
0.020*
0.0308 (8)
0.0283 (8)
0.0199 (7)
0.0138 (7)
0.0182 (8)
0.022*
0.022*
0.0247 (9)
0.030*
0.030*
0.0195 (8)
0.023*
0.0135 (7)
0.0133 (7)
0.0139 (7)
0.0141 (7)
0.017*
0.0149 (7)
0.0162 (7)
0.019*
0.019*
0.0286 (9)
0.034*
0.034*
0.0334 (10)
Occ. (<1)
sup-3
supplementary materials
H12A
H12B
C13
H13A
H13B
C14
C15
C16
C17
C18
C19
C20
C21
H21A
H21B
C22
H22A
H22B
C23
H23
C24
C25
C26
C27
H27
C28
C29
H29A
H29B
C30
H30A
H30B
C31
H31A
H31B
C32
H32A
H32B
C33
C34
C35
C36
C37
C38
S1
O1
C39
H39
C40
sup-4
−0.1285
−0.2041
−0.0279 (3)
0.0057
−0.0453
0.1147 (3)
0.1041 (3)
0.0647 (3)
0.1406 (3)
0.3565 (3)
0.1922 (3)
0.3623 (3)
0.4758 (3)
0.4808
0.5430
0.4708 (3)
0.4475
0.5462
0.3825 (3)
0.3701
0.3239 (3)
0.2275 (3)
0.1841 (3)
0.2436 (3)
0.2003
0.3695 (3)
0.4198 (3)
0.4215
0.3731
0.5411 (3)
0.5963
0.5658
0.5307 (3)
0.4947
0.6067
0.4547 (3)
0.4128
0.5013
0.2289 (3)
0.1865 (3)
0.1772 (3)
0.1474 (3)
0.1739 (3)
0.2760 (3)
0.5191 (4)
0.3269 (6)
0.3016 (8)
0.2264
0.3831 (6)
0.4807
0.5839
0.6350 (3)
0.6258
0.7131
0.4307 (3)
0.4207 (3)
0.3143 (3)
0.5114 (3)
0.5790 (3)
0.7745 (3)
1.2092 (3)
1.2877 (3)
1.3517
1.2466
1.3282 (3)
1.4044
1.3284
1.2450 (3)
1.2394
1.1801 (3)
1.0928 (3)
1.0304 (3)
1.0412 (3)
1.0924
1.0996 (3)
1.1257 (3)
1.2063
1.0822
1.0923 (3)
1.1539
1.0714
0.9926 (3)
0.9244
0.9788
1.0274 (3)
0.9608
1.0714
0.9305 (3)
0.9270 (3)
0.8260 (3)
1.0222 (3)
1.0779 (3)
1.2720 (3)
0.2016 (3)
0.0090 (5)
0.0856 (6)
0.0802
0.1866 (7)
0.8445
0.8033
0.7332 (3)
0.7960
0.6918
0.8139 (3)
0.9191 (3)
1.0194 (3)
0.9310 (3)
0.4394 (3)
0.5698 (3)
0.5421 (3)
0.4679 (3)
0.4810
0.4856
0.3445 (3)
0.3088
0.2987
0.3546 (3)
0.2921
0.4614 (3)
0.5128 (3)
0.6278 (3)
0.7085 (3)
0.7300
0.6531 (3)
0.7329 (3)
0.7082
0.8120
0.7248 (4)
0.6596
0.7954
0.7078 (4)
0.7803
0.6758
0.6243 (3)
0.6331
0.5452
0.8186 (3)
0.9199 (3)
1.0245 (3)
0.9246 (3)
0.4380 (3)
0.5729 (3)
0.9487 (3)
1.0456 (5)
1.0644 (6)
1.1067
1.0241 (5)
0.040*
0.040*
0.0173 (8)
0.021*
0.021*
0.0150 (7)
0.0168 (8)
0.0202 (8)
0.0195 (8)
0.0157 (7)
0.0159 (7)
0.0133 (7)
0.0180 (8)
0.022*
0.022*
0.0255 (9)
0.031*
0.031*
0.0202 (8)
0.024*
0.0146 (7)
0.0134 (7)
0.0127 (7)
0.0122 (7)
0.015*
0.0129 (7)
0.0163 (7)
0.020*
0.020*
0.0271 (9)
0.033*
0.033*
0.0279 (9)
0.033*
0.033*
0.0167 (8)
0.020*
0.020*
0.0127 (7)
0.0165 (8)
0.0206 (8)
0.0193 (8)
0.0162 (7)
0.0150 (7)
0.0527 (7)
0.0475 (17)
0.038 (2)
0.046*
0.038 (2)
0.50
0.50
0.50
0.50
0.50
supplementary materials
C41
H41
C42
H42
C43
H43
S1'
O1'
C39'
H39'
C40'
C41'
H41'
C42'
H42'
C43'
H43'
0.3604 (14)
0.2887
0.4531 (9)
0.4536
0.5438 (10)
0.6154
0.3563 (4)
0.5647 (7)
0.5830 (9)
0.6586
0.4948 (6)
0.5067 (14)
0.5776
0.4095 (8)
0.4042
0.3215 (9)
0.2462
0.2732 (10)
0.2782
0.3522 (9)
0.4191
0.3246 (6)
0.3704
0.2909 (3)
0.4697 (6)
0.3837 (7)
0.3787
0.2880 (8)
0.1919 (10)
0.1758
0.1200 (8)
0.0486
0.1629 (7)
0.1243
1.0424 (10)
1.0833
0.9949 (8)
0.9987
0.9423 (7)
0.9048
1.0178 (3)
0.9167 (6)
0.9125 (7)
0.8789
0.9564 (5)
0.9553 (9)
0.9243
1.0020 (7)
1.0078
1.0391 (6)
1.0744
0.0546 (8)
0.066*
0.065 (3)
0.078*
0.054 (3)
0.064*
0.0546 (8)
0.072 (2)
0.053 (3)
0.063*
0.041 (3)
0.0527 (7)
0.063*
0.044 (2)
0.053*
0.051 (3)
0.061*
0.50
0.50
0.50
0.50
0.50
0.50
0.50
0.50
0.50
0.50
0.50
0.50
0.50
0.50
0.50
0.50
0.50
Atomic displacement parameters (Å2)
N1
N2
N3
N4
N5
N6
N7
N8
N9
N10
N11
N12
C1
C2
C3
C4
C5
C6
C7
C8
C9
C10
C11
C12
C13
C14
C15
U11
0.0205 (16)
0.0155 (15)
0.0218 (16)
0.0316 (18)
0.040 (2)
0.0261 (17)
0.0260 (17)
0.0219 (15)
0.0236 (16)
0.044 (2)
0.041 (2)
0.0275 (17)
0.0172 (16)
0.0199 (18)
0.032 (2)
0.0238 (19)
0.0164 (16)
0.0151 (16)
0.0159 (16)
0.0177 (17)
0.0178 (17)
0.0205 (18)
0.0220 (19)
0.028 (2)
0.0214 (18)
0.0116 (16)
0.0217 (18)
U22
0.0246 (16)
0.0125 (14)
0.0111 (14)
0.0172 (16)
0.0175 (16)
0.0133 (14)
0.0238 (16)
0.0101 (13)
0.0116 (13)
0.0232 (17)
0.0181 (16)
0.0113 (14)
0.0097 (15)
0.0136 (16)
0.0210 (19)
0.0185 (17)
0.0097 (15)
0.0092 (15)
0.0080 (15)
0.0118 (15)
0.0109 (15)
0.0126 (16)
0.034 (2)
0.038 (2)
0.0168 (17)
0.0140 (16)
0.0112 (16)
U33
0.0219 (19)
0.0216 (18)
0.0191 (18)
0.0164 (18)
0.0218 (19)
0.0215 (18)
0.0239 (19)
0.0157 (17)
0.0129 (16)
0.021 (2)
0.0217 (19)
0.0208 (18)
0.0162 (19)
0.020 (2)
0.018 (2)
0.015 (2)
0.0152 (19)
0.0140 (19)
0.017 (2)
0.0130 (19)
0.0147 (19)
0.018 (2)
0.027 (2)
0.033 (3)
0.016 (2)
0.018 (2)
0.016 (2)
U12
0.0060 (13)
0.0030 (11)
0.0012 (11)
−0.0003 (13)
0.0057 (14)
0.0028 (12)
0.0025 (13)
0.0016 (11)
0.0024 (11)
0.0066 (15)
0.0016 (14)
0.0018 (12)
0.0040 (12)
0.0069 (13)
0.0074 (16)
0.0029 (14)
0.0023 (12)
0.0028 (12)
0.0014 (12)
0.0021 (13)
0.0039 (13)
0.0042 (13)
−0.0009 (17)
−0.0014 (18)
0.0073 (14)
0.0035 (12)
0.0033 (13)
U13
−0.0030 (14)
−0.0023 (13)
−0.0015 (13)
−0.0026 (14)
−0.0104 (15)
−0.0055 (14)
−0.0096 (14)
−0.0090 (13)
−0.0070 (13)
−0.0112 (16)
−0.0001 (15)
−0.0070 (14)
−0.0050 (14)
−0.0064 (15)
−0.0072 (17)
−0.0045 (15)
−0.0046 (14)
−0.0038 (14)
−0.0044 (14)
−0.0034 (14)
−0.0057 (14)
−0.0078 (15)
−0.0042 (17)
0.0011 (19)
−0.0045 (15)
−0.0030 (14)
−0.0061 (15)
U23
−0.0118 (15)
−0.0048 (13)
−0.0054 (13)
−0.0019 (14)
−0.0088 (14)
−0.0077 (14)
−0.0136 (15)
−0.0032 (12)
−0.0035 (12)
−0.0067 (16)
−0.0093 (15)
−0.0074 (13)
−0.0075 (14)
−0.0068 (15)
−0.0074 (17)
−0.0073 (16)
−0.0065 (14)
−0.0045 (14)
−0.0055 (14)
−0.0064 (14)
−0.0047 (14)
−0.0081 (15)
−0.0133 (19)
−0.021 (2)
−0.0105 (15)
−0.0071 (15)
−0.0047 (15)
sup-5
supplementary materials
C16
C17
C18
C19
C20
C21
C22
C23
C24
C25
C26
C27
C28
C29
C30
C31
C32
C33
C34
C35
C36
C37
C38
S1
O1
C39
C40
C41
C42
C43
S1'
O1'
C39'
C40'
C41'
C42'
C43'
0.0219 (19)
0.0229 (19)
0.0185 (17)
0.0197 (17)
0.0166 (16)
0.0202 (18)
0.032 (2)
0.0273 (19)
0.0173 (17)
0.0166 (16)
0.0150 (16)
0.0159 (16)
0.0177 (17)
0.0191 (17)
0.024 (2)
0.028 (2)
0.0166 (17)
0.0142 (16)
0.0224 (18)
0.029 (2)
0.0255 (19)
0.0202 (17)
0.0218 (18)
0.0638 (17)
0.060 (4)
0.041 (5)
0.050 (6)
0.0418 (12)
0.070 (7)
0.051 (7)
0.0418 (12)
0.074 (5)
0.047 (6)
0.039 (5)
0.0638 (17)
0.058 (6)
0.057 (6)
0.0192 (18)
0.0200 (18)
0.0107 (15)
0.0080 (15)
0.0078 (14)
0.0141 (16)
0.0214 (19)
0.0185 (18)
0.0136 (16)
0.0105 (15)
0.0087 (15)
0.0080 (14)
0.0083 (15)
0.0159 (17)
0.028 (2)
0.025 (2)
0.0118 (16)
0.0095 (15)
0.0137 (16)
0.0166 (18)
0.0165 (17)
0.0107 (15)
0.0091 (15)
0.0479 (14)
0.040 (3)
0.043 (5)
0.035 (5)
0.0609 (18)
0.052 (6)
0.044 (6)
0.0609 (18)
0.054 (4)
0.053 (6)
0.042 (5)
0.0479 (14)
0.050 (5)
0.050 (6)
0.021 (2)
0.016 (2)
0.0159 (19)
0.015 (2)
0.0142 (19)
0.017 (2)
0.014 (2)
0.014 (2)
0.0158 (19)
0.0159 (19)
0.0161 (19)
0.0109 (18)
0.0122 (18)
0.0139 (19)
0.034 (2)
0.036 (3)
0.019 (2)
0.0110 (18)
0.0127 (19)
0.019 (2)
0.0100 (19)
0.0155 (19)
0.016 (2)
0.0463 (14)
0.054 (4)
0.032 (5)
0.038 (5)
0.077 (2)
0.083 (7)
0.062 (7)
0.077 (2)
0.080 (5)
0.056 (6)
0.037 (5)
0.0463 (14)
0.034 (5)
0.055 (6)
0.0046 (15)
0.0070 (15)
0.0019 (13)
0.0033 (13)
0.0010 (12)
−0.0029 (13)
−0.0091 (16)
−0.0028 (15)
0.0019 (13)
0.0023 (13)
0.0054 (12)
0.0023 (12)
0.0006 (12)
0.0000 (13)
0.0049 (16)
0.0131 (16)
0.0024 (13)
−0.0011 (12)
−0.0012 (13)
0.0004 (15)
−0.0024 (14)
0.0021 (13)
0.0005 (13)
0.0097 (11)
0.014 (3)
0.007 (4)
0.011 (4)
0.0194 (12)
0.003 (5)
−0.014 (5)
0.0194 (12)
0.013 (4)
0.019 (5)
0.008 (4)
0.0097 (11)
0.007 (4)
0.010 (5)
−0.0031 (16)
−0.0034 (15)
−0.0052 (15)
−0.0008 (14)
−0.0061 (14)
−0.0049 (15)
0.0002 (16)
−0.0043 (15)
−0.0047 (14)
−0.0070 (14)
−0.0071 (14)
−0.0046 (13)
−0.0046 (14)
−0.0068 (14)
−0.0169 (18)
−0.0181 (19)
−0.0056 (15)
−0.0047 (13)
−0.0056 (15)
−0.0079 (16)
−0.0007 (15)
−0.0051 (15)
−0.0096 (15)
−0.0051 (12)
−0.027 (3)
−0.020 (4)
−0.021 (4)
−0.0207 (14)
−0.023 (6)
−0.001 (5)
−0.0207 (14)
−0.010 (4)
−0.016 (5)
−0.014 (4)
−0.0051 (12)
−0.021 (4)
−0.027 (5)
−0.0114 (17)
−0.0103 (16)
−0.0048 (14)
−0.0039 (14)
−0.0036 (14)
−0.0054 (15)
−0.0038 (16)
−0.0073 (16)
−0.0093 (15)
−0.0076 (14)
−0.0063 (14)
−0.0029 (14)
−0.0042 (14)
−0.0065 (15)
−0.0156 (19)
−0.0155 (19)
−0.0050 (15)
−0.0019 (14)
−0.0054 (15)
−0.0096 (17)
−0.0036 (15)
−0.0045 (14)
−0.0061 (15)
−0.0267 (11)
−0.026 (3)
−0.016 (4)
−0.021 (4)
−0.0436 (17)
−0.040 (5)
−0.029 (5)
−0.0436 (17)
−0.031 (4)
−0.023 (5)
−0.015 (4)
−0.0267 (11)
−0.024 (4)
−0.029 (5)
Geometric parameters (Å, °)
N1—C18
N2—C7
N2—H2N1
N2—H2N2
N3—C14
N3—H3N1
N3—H3N2
N4—C16
N5—C17
sup-6
1.152 (4)
1.349 (4)
0.8600
0.8600
1.327 (4)
0.8600
0.8600
1.144 (4)
1.148 (4)
C20—C24
C20—C21
C20—C28
C21—C22
C21—H21A
C21—H21B
C22—C23
C22—H22A
C22—H22B
1.515 (5)
1.555 (4)
1.565 (4)
1.538 (5)
0.9900
0.9900
1.499 (5)
0.9900
0.9900
supplementary materials
N6—C19
N7—C37
N8—C26
N8—H8N1
N8—H8N2
N9—C33
N9—H9N1
N9—H9N2
N10—C35
N11—C36
N12—C38
C1—C19
C1—C5
C1—C9
C1—C2
C2—C3
C2—H2A
C2—H2B
C3—C4
C3—H3A
C3—H3B
C4—C5
C4—H4
C5—C6
C6—C7
C6—C18
C7—C8
C8—C14
C8—C9
C8—H8
C9—C13
C9—C10
C10—C11
C10—H10A
C10—H10B
C11—C12
C11—H11A
C11—H11B
C12—C13
C12—H12A
C12—H12B
C13—H13A
C13—H13B
C14—C15
C15—C17
C15—C16
C20—C38
1.149 (4)
1.152 (4)
1.336 (4)
0.8600
0.8600
1.335 (4)
0.8600
0.8600
1.148 (5)
1.159 (5)
1.145 (4)
1.490 (5)
1.514 (5)
1.548 (4)
1.557 (5)
1.539 (5)
0.9900
0.9900
1.492 (5)
0.9900
0.9900
1.332 (5)
0.9500
1.447 (5)
1.368 (5)
1.414 (5)
1.505 (5)
1.522 (4)
1.569 (5)
1.0000
1.542 (5)
1.564 (4)
1.530 (5)
0.9900
0.9900
1.502 (6)
0.9900
0.9900
1.526 (5)
0.9900
0.9900
0.9900
0.9900
1.378 (5)
1.423 (5)
1.430 (5)
1.478 (5)
C23—C24
C23—H23
C24—C25
C25—C26
C25—C37
C26—C27
C27—C33
C27—C28
C27—H27
C28—C29
C28—C32
C29—C30
C29—H29A
C29—H29B
C30—C31
C30—H30A
C30—H30B
C31—C32
C31—H31A
C31—H31B
C32—H32A
C32—H32B
C33—C34
C34—C35
C34—C36
S1—C43
S1—C40
O1—C39
C39—C40
C39—H39
C40—C41
C41—C42
C41—H41
C42—C43
C42—H42
C43—H43
S1'—C43'
S1'—C40'
O1'—C39'
C39'—C40'
C39'—H39'
C40'—C41'
C41'—C42'
C41'—H41'
C42'—C43'
C42'—H42'
C43'—H43'
1.328 (5)
0.9500
1.456 (4)
1.369 (5)
1.425 (5)
1.514 (5)
1.519 (4)
1.562 (4)
1.0000
1.550 (5)
1.554 (5)
1.526 (5)
0.9900
0.9900
1.516 (5)
0.9900
0.9900
1.520 (5)
0.9900
0.9900
0.9900
0.9900
1.370 (5)
1.421 (5)
1.422 (5)
1.681 (8)
1.698 (8)
1.231 (8)
1.492 (8)
0.9500
1.355 (10)
1.364 (10)
0.9500
1.343 (9)
0.9500
0.9500
1.682 (8)
1.714 (8)
1.234 (8)
1.479 (8)
0.9500
1.340 (10)
1.351 (10)
0.9500
1.342 (9)
0.9500
0.9500
C7—N2—H2N1
C7—N2—H2N2
109.5
109.5
C20—C21—H21B
H21A—C21—H21B
110.7
108.8
sup-7
supplementary materials
H2N1—N2—H2N2
C14—N3—H3N1
C14—N3—H3N2
H3N1—N3—H3N2
C26—N8—H8N1
C26—N8—H8N2
H8N1—N8—H8N2
C33—N9—H9N1
C33—N9—H9N2
H9N1—N9—H9N2
C19—C1—C5
C19—C1—C9
C5—C1—C9
C19—C1—C2
C5—C1—C2
C9—C1—C2
C3—C2—C1
C3—C2—H2A
C1—C2—H2A
C3—C2—H2B
C1—C2—H2B
H2A—C2—H2B
C4—C3—C2
C4—C3—H3A
C2—C3—H3A
C4—C3—H3B
C2—C3—H3B
H3A—C3—H3B
C5—C4—C3
C5—C4—H4
C3—C4—H4
C4—C5—C6
C4—C5—C1
C6—C5—C1
C7—C6—C18
C7—C6—C5
C18—C6—C5
N2—C7—C6
N2—C7—C8
C6—C7—C8
C7—C8—C14
C7—C8—C9
C14—C8—C9
C7—C8—H8
C14—C8—H8
C9—C8—H8
C13—C9—C1
C13—C9—C10
C1—C9—C10
sup-8
109.5
109.5
109.5
109.5
109.5
109.5
109.5
109.5
109.5
109.5
107.9 (3)
107.8 (3)
110.4 (3)
110.7 (3)
103.0 (3)
116.8 (3)
105.4 (3)
110.7
110.7
110.7
110.7
108.8
103.9 (3)
111.0
111.0
111.0
111.0
109.0
112.5 (3)
123.8
123.8
131.9 (3)
111.7 (3)
116.2 (3)
119.9 (3)
121.5 (3)
118.2 (3)
123.9 (3)
115.4 (3)
120.6 (3)
109.5 (3)
116.0 (3)
114.8 (3)
105.1
105.1
105.1
112.5 (3)
104.9 (3)
109.4 (3)
C23—C22—C21
C23—C22—H22A
C21—C22—H22A
C23—C22—H22B
C21—C22—H22B
H22A—C22—H22B
C24—C23—C22
C24—C23—H23
C22—C23—H23
C23—C24—C25
C23—C24—C20
C25—C24—C20
C26—C25—C37
C26—C25—C24
C37—C25—C24
N8—C26—C25
N8—C26—C27
C25—C26—C27
C26—C27—C33
C26—C27—C28
C33—C27—C28
C26—C27—H27
C33—C27—H27
C28—C27—H27
C29—C28—C32
C29—C28—C27
C32—C28—C27
C29—C28—C20
C32—C28—C20
C27—C28—C20
C30—C29—C28
C30—C29—H29A
C28—C29—H29A
C30—C29—H29B
C28—C29—H29B
H29A—C29—H29B
C31—C30—C29
C31—C30—H30A
C29—C30—H30A
C31—C30—H30B
C29—C30—H30B
H30A—C30—H30B
C30—C31—C32
C30—C31—H31A
C32—C31—H31A
C30—C31—H31B
C32—C31—H31B
H31A—C31—H31B
C31—C32—C28
104.2 (3)
110.9
110.9
110.9
110.9
108.9
111.9 (3)
124.1
124.1
132.4 (3)
112.1 (3)
115.4 (3)
119.9 (3)
122.7 (3)
117.3 (3)
123.0 (3)
116.3 (3)
120.5 (3)
110.9 (3)
114.1 (3)
114.6 (3)
105.4
105.4
105.4
104.7 (3)
112.1 (3)
113.7 (2)
111.3 (2)
110.4 (3)
104.8 (3)
105.8 (3)
110.6
110.6
110.6
110.6
108.7
103.4 (3)
111.1
111.1
111.1
111.1
109.0
103.3 (3)
111.1
111.1
111.1
111.1
109.1
105.9 (3)
supplementary materials
C13—C9—C8
C1—C9—C8
C10—C9—C8
C11—C10—C9
C11—C10—H10A
C9—C10—H10A
C11—C10—H10B
C9—C10—H10B
H10A—C10—H10B
C12—C11—C10
C12—C11—H11A
C10—C11—H11A
C12—C11—H11B
C10—C11—H11B
H11A—C11—H11B
C11—C12—C13
C11—C12—H12A
C13—C12—H12A
C11—C12—H12B
C13—C12—H12B
H12A—C12—H12B
C12—C13—C9
C12—C13—H13A
C9—C13—H13A
C12—C13—H13B
C9—C13—H13B
H13A—C13—H13B
N3—C14—C15
N3—C14—C8
C15—C14—C8
C14—C15—C17
C14—C15—C16
C17—C15—C16
N4—C16—C15
N5—C17—C15
N1—C18—C6
N6—C19—C1
C38—C20—C24
C38—C20—C21
C24—C20—C21
C38—C20—C28
C24—C20—C28
C21—C20—C28
C22—C21—C20
C22—C21—H21A
C20—C21—H21A
C22—C21—H21B
111.2 (3)
104.7 (3)
114.3 (3)
105.6 (3)
110.6
110.6
110.6
110.6
108.8
104.8 (3)
110.8
110.8
110.8
110.8
108.9
103.6 (3)
111.0
111.0
111.0
111.0
109.0
105.6 (3)
110.6
110.6
110.6
110.6
108.8
122.2 (3)
117.8 (3)
119.9 (3)
121.6 (3)
119.6 (3)
118.6 (3)
175.1 (4)
177.1 (4)
179.4 (4)
176.7 (4)
108.4 (3)
109.8 (3)
102.9 (3)
108.4 (3)
109.8 (2)
117.2 (3)
105.1 (3)
110.7
110.7
110.7
C31—C32—H32A
C28—C32—H32A
C31—C32—H32B
C28—C32—H32B
H32A—C32—H32B
N9—C33—C34
N9—C33—C27
C34—C33—C27
C33—C34—C35
C33—C34—C36
C35—C34—C36
N10—C35—C34
N11—C36—C34
N7—C37—C25
N12—C38—C20
C43—S1—C40
O1—C39—C40
O1—C39—H39
C40—C39—H39
C41—C40—C39
C41—C40—S1
C39—C40—S1
C40—C41—C42
C40—C41—H41
C42—C41—H41
C43—C42—C41
C43—C42—H42
C41—C42—H42
C42—C43—S1
C42—C43—H43
S1—C43—H43
C43'—S1'—C40'
O1'—C39'—C40'
O1'—C39'—H39'
C40'—C39'—H39'
C41'—C40'—C39'
C41'—C40'—S1'
C39'—C40'—S1'
C40'—C41'—C42'
C40'—C41'—H41'
C42'—C41'—H41'
C43'—C42'—C41'
C43'—C42'—H42'
C41'—C42'—H42'
C42'—C43'—S1'
C42'—C43'—H43'
S1'—C43'—H43'
110.6
110.6
110.6
110.6
108.7
122.3 (3)
118.5 (3)
119.2 (3)
120.5 (3)
121.7 (3)
117.8 (3)
177.5 (4)
178.6 (4)
179.3 (4)
177.2 (3)
89.2 (5)
123.4 (9)
118.3
118.3
126.1 (9)
113.0 (9)
120.9 (7)
111.7 (13)
124.1
124.1
112.2 (12)
123.9
123.9
113.9 (8)
123.1
123.1
89.4 (5)
124.3 (10)
117.9
117.9
128.4 (9)
111.0 (10)
120.6 (8)
114.6 (14)
122.7
122.7
110.9 (12)
124.5
124.5
114.1 (9)
123.0
123.0
C19—C1—C2—C3
C5—C1—C2—C3
97.7 (3)
−17.4 (3)
C38—C20—C24—C25
C21—C20—C24—C25
−72.8 (3)
170.9 (3)
sup-9
supplementary materials
C9—C1—C2—C3
C1—C2—C3—C4
C2—C3—C4—C5
C3—C4—C5—C6
C3—C4—C5—C1
C19—C1—C5—C4
C9—C1—C5—C4
C2—C1—C5—C4
C19—C1—C5—C6
C9—C1—C5—C6
C2—C1—C5—C6
C4—C5—C6—C7
C1—C5—C6—C7
C4—C5—C6—C18
C1—C5—C6—C18
C18—C6—C7—N2
C5—C6—C7—N2
C18—C6—C7—C8
C5—C6—C7—C8
N2—C7—C8—C14
C6—C7—C8—C14
N2—C7—C8—C9
C6—C7—C8—C9
C19—C1—C9—C13
C5—C1—C9—C13
C2—C1—C9—C13
C19—C1—C9—C10
C5—C1—C9—C10
C2—C1—C9—C10
C19—C1—C9—C8
C5—C1—C9—C8
C2—C1—C9—C8
C7—C8—C9—C13
C14—C8—C9—C13
C7—C8—C9—C1
C14—C8—C9—C1
C7—C8—C9—C10
C14—C8—C9—C10
C13—C9—C10—C11
C1—C9—C10—C11
C8—C9—C10—C11
C9—C10—C11—C12
C10—C11—C12—C13
C11—C12—C13—C9
C1—C9—C13—C12
C10—C9—C13—C12
C8—C9—C13—C12
C7—C8—C14—N3
C9—C8—C14—N3
sup-10
−138.5 (3)
18.0 (3)
−12.2 (4)
−175.7 (3)
0.8 (4)
−106.3 (3)
136.1 (3)
10.7 (4)
70.8 (3)
−46.8 (4)
−172.1 (3)
−174.7 (3)
8.9 (4)
11.5 (5)
−164.9 (3)
6.0 (5)
−167.6 (3)
−176.8 (3)
9.5 (4)
−39.7 (4)
142.9 (3)
−171.6 (3)
11.0 (4)
65.2 (3)
−177.2 (3)
−60.1 (4)
−178.6 (3)
−61.0 (3)
56.1 (4)
−55.7 (3)
61.9 (3)
179.0 (3)
−167.1 (3)
63.5 (3)
−45.3 (3)
−174.7 (3)
74.4 (3)
−55.0 (4)
6.0 (4)
−114.9 (3)
128.0 (3)
−28.3 (4)
39.6 (4)
−35.8 (4)
136.9 (3)
18.0 (4)
−106.0 (3)
−50.7 (4)
81.8 (4)
C28—C20—C24—C25
C23—C24—C25—C26
C20—C24—C25—C26
C23—C24—C25—C37
C20—C24—C25—C37
C37—C25—C26—N8
C24—C25—C26—N8
C37—C25—C26—C27
C24—C25—C26—C27
N8—C26—C27—C33
C25—C26—C27—C33
N8—C26—C27—C28
C25—C26—C27—C28
C26—C27—C28—C29
C33—C27—C28—C29
C26—C27—C28—C32
C33—C27—C28—C32
C26—C27—C28—C20
C33—C27—C28—C20
C38—C20—C28—C29
C24—C20—C28—C29
C21—C20—C28—C29
C38—C20—C28—C32
C24—C20—C28—C32
C21—C20—C28—C32
C38—C20—C28—C27
C24—C20—C28—C27
C21—C20—C28—C27
C32—C28—C29—C30
C27—C28—C29—C30
C20—C28—C29—C30
C28—C29—C30—C31
C29—C30—C31—C32
C30—C31—C32—C28
C29—C28—C32—C31
C27—C28—C32—C31
C20—C28—C32—C31
C26—C27—C33—N9
C28—C27—C33—N9
C26—C27—C33—C34
C28—C27—C33—C34
N9—C33—C34—C35
C27—C33—C34—C35
N9—C33—C34—C36
C27—C33—C34—C36
C28—C20—C38—N12
O1—C39—C40—C41
O1—C39—C40—S1
C43—S1—C40—C41
45.5 (4)
175.6 (4)
−8.6 (5)
−7.9 (6)
167.9 (3)
−8.1 (5)
168.3 (3)
176.9 (3)
−6.6 (5)
37.1 (4)
−147.6 (3)
168.3 (3)
−16.4 (4)
170.8 (3)
−59.8 (4)
−70.7 (4)
58.7 (4)
49.9 (3)
179.3 (3)
−67.2 (3)
174.5 (3)
57.7 (4)
177.0 (2)
58.7 (3)
−58.1 (4)
54.2 (3)
−64.1 (3)
179.1 (3)
12.5 (3)
136.3 (3)
−106.7 (3)
−33.5 (4)
41.6 (4)
−33.9 (4)
13.1 (3)
−109.6 (3)
133.0 (3)
52.2 (4)
−78.8 (4)
−126.9 (3)
102.1 (4)
4.2 (5)
−176.8 (3)
−173.9 (3)
5.1 (5)
−52 (8)
−179.8 (2)
−0.3 (3)
−0.2 (2)
supplementary materials
C7—C8—C14—C15
C9—C8—C14—C15
N3—C14—C15—C17
C8—C14—C15—C17
N3—C14—C15—C16
C8—C14—C15—C16
C38—C20—C21—C22
C24—C20—C21—C22
C28—C20—C21—C22
C20—C21—C22—C23
C21—C22—C23—C24
C22—C23—C24—C25
C22—C23—C24—C20
C38—C20—C24—C23
C21—C20—C24—C23
C28—C20—C24—C23
127.3 (3)
−100.2 (4)
171.0 (3)
−6.9 (5)
−3.5 (5)
178.5 (3)
−96.4 (3)
18.8 (4)
139.4 (3)
−18.8 (4)
12.0 (4)
176.3 (4)
0.4 (4)
103.8 (3)
−12.4 (4)
−137.9 (3)
C43—S1—C40—C39
C39—C40—C41—C42
S1—C40—C41—C42
C40—C41—C42—C43
C41—C42—C43—S1
C40—S1—C43—C42
O1'—C39'—C40'—C41'
O1'—C39'—C40'—S1'
C43'—S1'—C40'—C41'
C43'—S1'—C40'—C39'
C39'—C40'—C41'—C42'
S1'—C40'—C41'—C42'
C40'—C41'—C42'—C43'
C41'—C42'—C43'—S1'
C40'—S1'—C43'—C42'
−179.7 (2)
179.7 (2)
0.2 (3)
−0.2 (4)
0.1 (4)
0.1 (2)
179.9 (2)
0.2 (3)
0.1 (2)
179.8 (2)
−179.9 (2)
−0.2 (4)
0.2 (4)
−0.1 (3)
0.0 (2)
Hydrogen-bond geometry (Å, °)
D—H···A
D—H
H···A
D···A
D—H···A
0.86
2.23
2.909 (4)
136
N3—H3n1···N11ii
0.86
2.28
2.970 (4)
138
N3—H3n2···N12ii
0.86
2.29
3.042 (4)
147
N8—H8n1···N7iii
0.86
2.45
2.921 (4)
115
0.86
2.31
3.006 (4)
N8—H8n2···N4iv
N9—H9n1···N5
0.86
2.39
3.098 (4)
N9—H9n2···N6
0.86
2.35
3.178 (4)
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x, y−1, z; (iii) −x, −y+2, −z+1; (iv) −x, −y+1, −z+2.
138
N2—H2n1···N1
i
139
163
sup-11
supplementary materials
Fig. 1
sup-12