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1,000 results • Page 1 of 20
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Forum: Questions on what to focus on in the next 3-4 years of my research
Career offtopic path
6 days ago by Abiodun • 0
4
votes
3
replies
392
views
Forum: How to get into research for an absolute beginners
research
updated 7 days ago by ▴ 10 • written 10 days ago by • 0
21
votes
12
replies
989
views
7 follow
Forum: Reproducibility Crisis
R-Bioinformatics
updated 18 days ago by 21k • written 20 days ago by ▴ 20
0
votes
0
replies
209
views
Forum: Decoding Corvid Intelligence: Genomics, AI & the Genetics of Cognition
neurogenetics comparative-genomics bioinformatics genomics machine-learning
updated 25 days ago by 45k • written 25 days ago by • 0
39
votes
14
replies
1.6k
views
12 follow
Forum: How do you estimate time to complete a project or task?
career ngs
written 10 weeks ago by ▴ 970
2
votes
3
replies
402
views
Forum: Career Advice
careeradvice
updated 5 weeks ago by 5.9k • written 5 weeks ago by • 0
1
vote
1
reply
271
views
Forum: Realistic expectations for the current job market?
career_advice resume job_market resume_advice employment
updated 5 weeks ago by 150k • written 5 weeks ago by ▴ 10
5
votes
2
replies
354
views
Forum: Do you agree with the practice of combing TCGA with GTEx?
GTEx TCGA
updated 5 weeks ago by 21k • written 6 weeks ago by ▴ 40
12
votes
6
replies
755
views
Forum: What is the current state of the beef against UMAP/tSNE in the context of sc trajectory analysis/monocle3?
monocle3 umap single-cell tSNE trajectory
6 weeks ago by txema.heredia ▴ 210
6
votes
6
replies
992
views
Forum: Preparation needed to get into Bioinformatics
education
updated 10 weeks ago by 45k • written 10 weeks ago by • 0
0
votes
0
replies
275
views
Forum: Variant calling (SNV/InDel): is only using properly paired reads recommended?
mapping variants
updated 12 weeks ago by 150k • written 12 weeks ago by 6.1k
13
votes
7
replies
930
views
7 follow
Forum: Premade RNA-seq pipeline or custom
rna-seq pipeline
updated 3 months ago by 21k • written 3 months ago by ▴ 40
9
votes
4
replies
1.4k
views
Forum: A beginner's guide and In-depth exploration of AlphaFold
AlphaFold ColabFold
updated 3 months ago by ★ 29k • written 3 months ago by ▴ 20
0
votes
0
replies
412
views
Forum: Survey: Exploring RNA Data Quality in Genomics
Quality Interpretation Sequencing Survey RNA
3 months ago by chrisk • 0
15
votes
12
replies
3.0k
views
6 follow
Forum: New Macbook M4 laptops (Pro vs Max)
Pro Max Mac RNA-Seq M4
updated 3 months ago by ★ 7.3k • written 3 months ago by ▴ 10
3
votes
3
replies
558
views
Forum: What is meant by referring to research studies as "stories"?
articles science story genomics
updated 3 months ago by 87k • written 3 months ago by ▴ 20
11
votes
7
replies
813
views
6 follow
Forum: How people usually perform scRNA Seq Analysis on HPC?
hpc Single-cell cluster scRNA-Seq
updated 4 months ago by 45k • written 4 months ago by • 0
5
votes
6
replies
711
views
Forum: How do I start my journey as bioinformatics?
Student Education Career Bioinformatics Programming
updated 4 months ago by ★ 18k • written 4 months ago by • 0
9
votes
10
replies
6.0k
views
11 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 4 months ago by ▴ 10 • written 9.9 years ago by ★ 2.2k
11
votes
6
replies
3.3k
views
Forum: Science Games For Citizen Science And Educational Purposes
education
written 12.2 years ago by 11k
16
votes
7
replies
1.1k
views
7 follow
Forum: How the field has changed in the last 5 years, and 25 years (up to 2024)
bioinformatics biology
updated 5 months ago by 4.1k • written 5 months ago by ▴ 30
0
votes
0
replies
277
views
Forum: epitope-TCR binding prediction, vaccine design
vaccine epitope-TCR binding
6 months ago by Dara • 0
0
votes
0
replies
364
views
Forum: layoffs in biotech
layoff biotech
6 months ago by Dara • 0
25
votes
13
replies
1.7k
views
6 follow
Forum: How to do datamining in bioinformatics
data-mining
updated 6 months ago by 4.7k • written 6 months ago by ▴ 70
19
votes
9
replies
1.4k
views
6 follow
Forum: The Evolution of NGS: What’s New and What’s Next?
ngs
updated 6 months ago by 150k • written 6 months ago by 5.9k
10
votes
4
replies
796
views
Forum: Awesome awesomeness bioinformatics
bioinformatics Awesome
6 months ago by Juke34 9.2k
4
votes
4
replies
754
views
Forum: What companies do you recommend for targeted sequencing?
Targeted-sequencing
6 months ago by amy__ ▴ 250
3
votes
2
replies
658
views
Forum: A guide for beginners in bioinformatics
sequencing ngs
updated 6 months ago by 45k • written 6 months ago by • 0
7
votes
8
replies
4.9k
views
9 follow
Forum: Dentist interested in bioinformatics
career
updated 7 months ago by ★ 2.9k • written 8.3 years ago by ▴ 10
5
votes
18
replies
2.7k
views
Forum: Is "training", fine tuning, or overfitting on "external independent validation datasets" considered cheating or scientific misconduct?
tools scientific misconduct overfitting
7 months ago by ivicts ▴ 10
12
votes
5
replies
1.1k
views
Forum: Books and Blogs guiding the programming practice in bioinformatic research?
R Python Programming
8 months ago by JustinZhang ▴ 130
9
votes
12
replies
1.7k
views
7 follow
Forum: What bioinformatics codes would you use for performance benchmarking on a new system?
benchmarking
8 months ago by Dave Carlson ★ 2.1k
5
votes
2
replies
723
views
Forum: GPU-enabled bioinformatics
GPU
8 months ago by Dave Carlson ★ 2.1k
36
votes
12
replies
2.2k
views
11 follow
Forum: How to improve a bioinformatics study and paper so that it is not considered "too preliminary" by publishers and journals?
DEG journal
updated 8 months ago by 5.1k • written 8 months ago by ▴ 60
0
votes
0
replies
328
views
Forum: Advice on Entering the field of Bioinformatics in Canada
career
updated 8 months ago by 45k • written 8 months ago by • 0
6
votes
3
replies
1.2k
views
Forum: leetcode for bioinformatics?
leetcode
updated 9 months ago by 5.1k • written 9 months ago by ★ 2.0k
43
votes
19
replies
75k
views
14 follow
Forum: Will A Masters In Bioinformatics Help Me In Getting A Job?
education career
updated 9 months ago by 45k • written 14.0 years ago by ▴ 50
6
votes
4
replies
892
views
Forum: Resume building projects to break into bioinformatics?
job-hunting career-change
updated 7 months ago by ★ 2.1k • written 9 months ago by ▴ 20
1
vote
2
replies
1.0k
views
Forum: scRNA-seq: Do people eliminate housekeeping genes for the sake of increasing algorithmic efficiency (and this speed)?
housekeeping-genes scRNA-seq
updated 9 months ago by 45k • written 9 months ago by • 0
36
votes
14
replies
3.2k
views
9 follow
Forum: Good Bioinformatics Jokes/Puns?
bioinformatics
updated 9 months ago by 12k • written 9 months ago by ▴ 20
1
vote
1
reply
653
views
Forum: Looking for opinions on the MSc Computational Biology and Bioinformatics program at the University of Göttingen
masters germany
updated 9 months ago by 150k • written 9 months ago by • 0
0
votes
1
reply
302
views
Forum: Are bacterial 16s paralogs real, and do they bias microbiome analyses conducted with QIIME2?
QIIME paralog microbiome bias 16s
10 months ago by evozoa • 0
2
votes
6
replies
1.2k
views
Forum: How do you make an original contribution to knowledge in applied bioinformatics?
thesis academia PhD
10 months ago by Edna • 0
1
vote
10
replies
1.2k
views
Forum: Posts getting removed?
meta biostars
updated 10 months ago by 45k • written 10 months ago by ▴ 650
6
votes
1
reply
564
views
Forum: Mailing list for academic programs and positions
masters phd
updated 10 months ago by 45k • written 10 months ago by • 0
2
votes
2
replies
504
views
Forum: How Can BioJobs Lab Effectively Attract Top Talent and Employers in the Biotech Industry?
biotech
updated 10 months ago by ▴ 30 • written 10 months ago by • 0
9
votes
13
replies
3.1k
views
7 follow
Forum: Ideal PC configurations and operating system for bioinformatics laboratory
PC
updated 10 months ago by 21k • written 11 months ago by ▴ 10
0
votes
0
replies
424
views
Forum: Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation scRNA llm
11 months ago by yxwucq • 0
5
votes
2
replies
672
views
Forum: Bioinformatics: Where do I start
Sequencing
updated 12 months ago by 45k • written 12 months ago by ▴ 20
11
votes
7
replies
4.0k
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 12 months ago by ★ 2.9k • written 12 months ago by ▴ 10
1,000 results • Page 1 of 20
Recent Votes
Building an mmCIF parser for enzyme structure analysis — feedback & ideas welcome!
Answer: MultiQC_report
Comment: MultiQC_report
Answer: About the Tool FASTP
Answer: [URGENT] Need Help with Cytoscape CLI Command for STRING App
Answer: [URGENT] Need Help with Cytoscape CLI Command for STRING App
Comment: Identify gene from sequence at scale in non-model organisms
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Answer: Extract length of sample sequence from vcf by jahnreinhard.ringger • 0
I have figured out the issue, and also unfortunately why counting with awk will not work, but I do not have a solution to my problem. Th…
Comment: Using Principal Components may muddle the detecting power of a GWAS? by DBScan ▴ 470
If you are doing PCA to capture population stratification, you should not perform PCA only on your data, but project your samples onto a pr…
Answer: RNA-seq, three comparisons - stick to one linear model, or use separate models? by ATpoint 87k
There is no scrict rule for this. Generally, if variability between groups is somewhat in the same ballpark, e.g. approxiated by PCA, then …
Comment: Identify gene from sequence at scale in non-model organisms by matthewmerkin32 • 0
Thanks for the suggestion, I had not heard of PANNZER. However, when I click on the link given in their paper (http://ekhidna2.biocenter.he…
Answer: Helicobacter pylori low-rate alignment by colindaven 7.4k
These are really really old 454 data. They likely have a read length of about 400bp. The bowtie2 aligner is not suitable for these AFAIK. …
Comment: Can The Wget Command Be Used To Download Pdbs by Calvin • 0
The URL of the PDB website has been changed, you can still download PDB files directly through URLs such as : http://www.rcsb.org/pdb/file…
Comment: ONT Live-Basecalling Issue? by GenoMax 150k
Did this block eliminate itself over time? It looks like ~4 M initial reads in your run are in "paused" state. Have not heard of this happe…
Answer: Is a log2 transformation an essential step in preparing expression data for mach by Mensur Dlakic ★ 29k
> Is a log2 transformation an essential step in preparing the expression data for machine learning, or can the normalized raw expression da…
Comment: How to re-annotate the structure of gene against a known genomic file by Mensur Dlakic ★ 29k
If you look above from this writing, this question was asked 5.9 years ago. If you click on user's name, you will see that they last visite…
Comment: Is a log2 transformation an essential step in preparing expression data for mach by Sib ▴ 60
I would greatly appreciate it if you could refer me to a tutorial on conducting feature selection for microarray data using some (or all) o…
Comment: Identify gene from sequence at scale in non-model organisms by shelkmike ★ 1.5k
I don't understand why you think that you need some gene names to perform GO annotation. Just upload your proteins to PANNZER. It is an onl…
Comment: How to re-annotate the structure of gene against a known genomic file by Olayemi F. • 0
Hey Kanoo, How did this later turn out for you?
Comment: Batch effect by Fatemeh ▴ 40
Thanks very much.
Comment: Is a log2 transformation an essential step in preparing expression data for mach by ATpoint 87k
You're shooting buzz words as in the question before. Please read the underlying literature and follow guided tutorials. There is no genera…
Comment: TPM vs FPKM divergence at high values by ATpoint 87k
Please show the functions to calculate this. Both transformations are simple division and multiplication operations with the column sums of…
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