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News: Cellosaurus release 52 is available
database line cell knowledgebase biocuration
13 hours ago by Amos Bairoch ▴ 130
836
votes
169
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173k
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110 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 6 months ago by 3.4k • written 8.4 years ago by 102k
0
votes
1
reply
121
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News: Structural bioinformatics workshop
Structural bioinformatics
updated 1 day ago by 150k • written 1 day ago by • 0
0
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0
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137
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News: Online Course: Machine learning for multi-omics integration (9–11 June)
Machine-Learning Mult-Omics
2 days ago by Physalia-courses ★ 2.6k
5
votes
1
reply
233
views
News: The IGB team needs your help! Write a letter of support to keep the Integrated Genome Browser running!
IGB Integrated-Genome-Browser Funding
updated 3 days ago by ★ 2.0k • written 3 days ago by ▴ 900
0
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0
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186
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News: News:Workshop:Virtual Genome Assembly, April 15-17
virtual-workshop Genome-Assembly UConn
updated 4 days ago by 45k • written 4 days ago by • 0
0
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0
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154
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News: Course: Phylogenetic Comparative Methods in R – May 12–16 (Online)
R Phylogenetic-Comparative-Methods Ultrametric-Phylogenies
updated 5 days ago by 45k • written 6 days ago by ★ 2.6k
0
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0
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209
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News: Online course — Comparative Genomics — 7–11 April
SNVs ComparativeGenomics SVs GenomeAnnotation
8 days ago by Physalia-courses ★ 2.6k
1
vote
4
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473
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News: Wolfram tech for bio data analysis
plots statistics databases ai
10 days ago by dk7258859 • 0
0
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0
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222
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News: Live Online course: Introduction to Python, April, 2025
python programming course
11 days ago by soledad.esteban • 0
0
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0
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182
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News: Introduction to Epigenomics course
Epigenomics RNA-seq ATAC-seq Chip-seq HI-C
12 days ago by Physalia-courses ★ 2.6k
0
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0
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214
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News: Epigenomics Data Analysis
Epigenomics RNA-seq ATAC-seq Chip-seq HI-C
19 days ago by Physalia-courses ★ 2.6k
4
votes
0
replies
292
views
News: Join the online/distributed nf-core Hackathon next week!
nf-core nextflow container workflows bioinformatics
22 days ago by Matthias Zepper 5.1k
0
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0
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210
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News: Machine Learning for Longitudinal Data with Python – Online Course (6-9 May)
MachineLearning LongitudinalData DeepLearning Omics
24 days ago by Physalia-courses ★ 2.6k
1
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2
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1.3k
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News: Final Call - Next-Generation Sequencing Data Analysis: A Practical Introduction (April 2-4 in Munich) - Only 2 seats left
Workshop RNAseq Variant-Calling Illumina DNAseq
25 days ago by ecSeq Bioinformatics ▴ 10
0
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0
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198
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News: Spring School in Bioinformatics - online, March 31 to April 4
Singularity NGS RNAseq Phylogenomics Docker
28 days ago by Physalia-courses ★ 2.6k
0
votes
0
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211
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News: Multi-Omics Integration with Machine Learning — Online Course!
Machine-Learning Multi-Omics Depp-Learning Data-Integration BigData
29 days ago by Physalia-courses ★ 2.6k
0
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0
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193
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News: Live Online Course: Introduction to Python, April, 2025
python programming course
4 weeks ago by soledad.esteban • 0
0
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0
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185
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News: Last Two Spots Available – R/Bioconductor for Mass Spectrometry & Proteomics
Proteomics Bioconductor Mass-Spectrometry R
updated 4 weeks ago by 45k • written 4 weeks ago by ★ 2.6k
0
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0
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171
views
News: Last-Minute Open Spots for Our RNA-Seq Workshops!
single-cell transcriptomics scRNAseq RNAseq
updated 4 weeks ago by 45k • written 4 weeks ago by ▴ 10
0
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0
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213
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News: Course: Comparative Genomics (ONLINE; April 7-11)
Comparative-Genomics SV SNV Genome-Annotation
updated 4 weeks ago by 45k • written 4 weeks ago by ★ 2.6k
0
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0
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159
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News: Online course: Assembly and Annotation of Genomes - March 17th-21st
Genome-Annotation Nanopore PacBio Illumina Genome-Assembly
5 weeks ago by Physalia-courses ★ 2.6k
0
votes
0
replies
153
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News: Online Course – Flow Cytometry Data Analysis with R/Bioconductor (March 17-20)
R Bioconductor FlowCytometry
5 weeks ago by Physalia-courses ★ 2.6k
0
votes
0
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147
views
News: Mass Spectrometry and Proteomics using R and Bioconductor course
R Bioconductor Mass-Spectrometry Proteomics
updated 5 weeks ago by 45k • written 5 weeks ago by ★ 2.6k
0
votes
0
replies
193
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News: Gene Set Enrichment Analysis in R/Bioconductor course - Online, March 3-6. Last call
R Bioconductor Gene-Set-Enrichment-Analysis GSEA
updated 6 weeks ago by 45k • written 6 weeks ago by ★ 2.6k
0
votes
1
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270
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News: Web Scraping and Text Analysis in R (March 21st - April 11th, 2025) Course
rstats data-analysis web-scraping R
updated 6 weeks ago by 45k • written 6 weeks ago by ▴ 70
0
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0
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153
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News: Introduction to Machine Learning in R online course
R statistics AI machine-learning
updated 6 weeks ago by 45k • written 6 weeks ago by ▴ 70
0
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0
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204
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News: Course on Ancient Metagenomics - online, 27-29 May
ancientDNA Metagenomics aMeta
7 weeks ago by Physalia-courses ★ 2.6k
0
votes
0
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211
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News: Bayesian Data Analysis in R course - online, March 3-7
Bayesian Statistics R
7 weeks ago by Physalia-courses ★ 2.6k
0
votes
2
replies
1.4k
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (March 17-19, 2025 in Berlin, Germany)
transcriptomics scRNAseq singleCell
7 weeks ago by ecSeq Bioinformatics ▴ 10
0
votes
0
replies
219
views
News: Online Course: Network Analysis in R (May 5-8)
R NetworkAnalyis Tidyverse
7 weeks ago by Physalia-courses ★ 2.6k
0
votes
1
reply
305
views
News: Short Survey on Genomic Data Management & Analysis Workflows
Analysis Genomics
updated 7 weeks ago by 23k • written 7 weeks ago by • 0
0
votes
0
replies
212
views
News: Online Course: Flow Cytometry Data Analysis with R/Bioconductor (17–20 March 2025)
R Bioconductor Flow-Cytometry Cancer-Genomics
8 weeks ago by Physalia-courses ★ 2.6k
6
votes
9
replies
5.5k
views
6 follow
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
updated 8 weeks ago by • 0 • written 3.9 years ago by ★ 2.1k
0
votes
0
replies
170
views
News: Bayesian Data Analysis in R – Online Course (March 3-7)
R RegressionModeling Statistics Byesian
8 weeks ago by Physalia-courses ★ 2.6k
0
votes
0
replies
176
views
News: Introduction to Machine Learning with R - online, March 3–7
R Machine-Learning omics Genomics
updated 8 weeks ago by 45k • written 8 weeks ago by ★ 2.6k
0
votes
0
replies
187
views
News: Online Course: Machine Learning Methods for Longitudinal Data with Python
Longitudinal-Data Machine-Learning Deep-Learning Omics
updated 8 weeks ago by 45k • written 8 weeks ago by ★ 2.6k
0
votes
0
replies
215
views
News: course: Generalised Linear Models in R - Online, 24–28 February.
R Generalised-Linear-Models GLM
updated 8 weeks ago by 45k • written 9 weeks ago by ★ 2.6k
1
vote
1
reply
277
views
News: Seafood Genomics course - Online, February 25-28
qPCR Genomic-Traceability Nanopore Seafood-Genomics
updated 8 weeks ago by 23k • written 9 weeks ago by ★ 2.6k
0
votes
0
replies
194
views
News: [Online Course] Genome-Wide Prediction of Complex Traits (March 24-28, 2025)
MachineLearning MixedModels BayesianRegression GenomicPrediction GenomicRiskScores
9 weeks ago by Physalia-courses ★ 2.6k
0
votes
0
replies
363
views
News: GeneBe Hub RFC: We Need Your Feedback
RFC variant annotation
updated 9 weeks ago by 150k • written 9 weeks ago by • 0
0
votes
0
replies
225
views
News: Epigenomics course
HIC ATACseq Epigenomics MultiOmics Chipseq
9 weeks ago by Physalia-courses ★ 2.6k
0
votes
0
replies
208
views
News: Introduction to Python for biologists course
NGS Python Programming
10 weeks ago by Physalia-courses ★ 2.6k
0
votes
0
replies
236
views
News: Spring School in Bioinformatics - ONLINE, 31 March–4 April 2025
NGS Phylogenomics RNAseq
10 weeks ago by Physalia-courses ★ 2.6k
0
votes
0
replies
242
views
News: Workshop: Virtual RNA-seq Analysis, February 4-6
gene RNASeq workshop expression
11 weeks ago by spu24005 • 0
0
votes
0
replies
250
views
News: Online Course: Spatial Omics in R/Bioconductor | 19-21 May 2025
Spatial-Omics Bioconductor Tidyverse Omics
11 weeks ago by Physalia-courses ★ 2.6k
0
votes
0
replies
211
views
News: Course live online Intro Bayesian Analysis, February 17th-21st, 2025
python bayesian rproject statistics
11 weeks ago by Sole • 0
0
votes
0
replies
238
views
News: Computational Pangenomics course
Pangenomics Pangenome-Graphs
11 weeks ago by Physalia-courses ★ 2.6k
0
votes
1
reply
482
views
News: In-Person Workshop: Bulk RNA-Seq Data Analysis Workshop (March 24 - 27, 2025 in Halle, Germany)
Transcriptomics Workshop RNA-Seq
12 weeks ago by ecSeq Bioinformatics ▴ 10
0
votes
0
replies
265
views
News: online course: R/Bioconductor for Mass Spectrometry and Proteomics
Bioconductor R Spectrometry Mass Proteomics
12 weeks ago by Physalia-courses ★ 2.6k
1,000 results • Page 1 of 20
Recent Votes
Insert Size And Fragment Size ?
A: Insert Size And Fragment Size ?
A: Insert Size And Fragment Size ?
Insert Size And Fragment Size ?
A: Big differences with CollectHsMetrics
A: Big differences with CollectHsMetrics
Answer: Picard gives empty value for HS_LIBRARY_SIZE when running CollectHsMetrics
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Recent Replies
Comment: TPM vs FPKM divergence at high values by pinheirofabiano ▴ 100
I don't have a better mathematical explanation, but FPKMs are not reliable for gene expression studies, there are many discussions about t…
Comment: TPM vs FPKM divergence at high values by megancgrdnr • 0
Thank you for your answer! Do you have any sense of why the expression values diverge at higher-expressed genes? I can't see anything in th…
Comment: What does vg autoindex mpmap do? by Jordan M Eizenga ▴ 690
GCSA indexing certainly can be time consuming. On a reasonably well-behaved graph (such as those derived from VCFs, or usually those from t…
Comment: WGCNA by 1769mkc ★ 1.2k
what your gene expression matrix size or dimension?
Answer: WGCNA by PFSXR • 0
There are too few valid genes in the input matrix expr_filtered, possibly because after the goodSamplesGenes filtering, only the grey modul…
Comment: Batch effect by Picasa ▴ 670
~ batch + condition
Answer: Batch effect by pinheirofabiano ▴ 100
please read this paper: [ComBat-seq][1] [1]: https://academic.oup.com/nargab/article/2/3/lqaa078/5909519
Answer: convert Gene ID to Gene Symbol by pinheirofabiano ▴ 100
I asked the same question months ago... [https://www.biostars.org/p/9604385/][1] [1]: https://www.biostars.org/p/9604385/
Answer: TPM vs FPKM divergence at high values by pinheirofabiano ▴ 100
Go with TPM, when you use TPM, the sum of all TPMs in each sample are the same. This makes it easier to compare the proportion of reads tha…
Comment: Help finding GTEx v8 file by 蒲蒲 • 0
Thank you for your reply, but when I tried to log in to ANVIL, I was told that I didn't have access, so I tried to ask for help.
Comment: Blastx issue by JustinZhang ▴ 130
Check this out: [Biorixv][1] [1]: https://www.biorxiv.org/content/10.1101/2024.08.18.608522v1.full
Comment: How to test the similarity of two gene expression profiles by JustinZhang ▴ 130
Is it hard for you to list the number of samples and runs? If you cannot figure it out, at least you can show the number of files and their…
Comment: How to test the similarity of two gene expression profiles by JustinZhang ▴ 130
Then just upload the csv/tsv to LLMs.
Comment: How to keep the same view for different AlphaFold 3 simulations in ChimeraX? by LauferVA 4.7k
would you mind posting this as a separate question, then linking to this question and @ me?
Comment: How to test the similarity of two gene expression profiles by htchd • 0
Sorry, I thought they are the same. I have two gene expression profiles(each with one column of gene name, and another column of fold chang…
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