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50 results • Page
1 of 1
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Showing top results for tag:
oma
•
reset
1
vote
2
replies
300
views
Converting OMA IDs to Ensembl gene names
orthologs
OMA
ensembl
updated 11 weeks ago by
Ram
44k • written 11 weeks ago by
Eric
• 0
0
votes
1
reply
245
views
Obtaining OMA and HOG IDs
OMA
browser
updated 4 months ago by
Adrian Altenhoff
★ 1.1k • written 4 months ago by
gtzotzos
• 0
2
votes
1
reply
365
views
Finding orthologs between genome error
OMA
OMAbrowser
updated 5 months ago by
Adrian Altenhoff
★ 1.1k • written 5 months ago by
hemantcnaik
• 0
0
votes
2
replies
329
views
Mapping of OMA IDs to UniProtKB AC
OMA
orthologs
updated 6 months ago by
GenoMax
146k • written 6 months ago by
george
• 0
2
votes
2
replies
401
views
Errors from REST and Browser for specific HOGS?
OMA
9 months ago by
Andrew
▴ 20
4
votes
6
replies
1.3k
views
OMA in AWS cloud
OMA
AWS
updated 12 months ago by
Adrian Altenhoff
★ 1.1k • written 13 months ago by
Ksel
▴ 10
2
votes
2
replies
808
views
Retrieving Chromosome Accession for Specific Gene Using Ensembl REST API
OMA
Ensembl
Rest
updated 14 months ago by
Ram
44k • written 14 months ago by
Nicolas
• 0
2
votes
3
replies
620
views
Downloading Microsyntenic Fasta Sequences with Varying Chromosome Formats
microsyntenic-region
fasta
oma
chromosomes
14 months ago by
Nicolas
• 0
0
votes
11
replies
1.5k
views
search for intron conservancy across species
intron
oma
intronDB
splicing
15 months ago by
Buffo
★ 2.4k
0
votes
5
replies
933
views
oma orthology part 2 script
oma
orthologous-groups
orthology
updated 15 months ago by
Silvia Prieto
▴ 30 • written 15 months ago by
kylakell
• 0
1
vote
0
replies
1.1k
views
Job:
Postdoctoral position in Evolutionary Structural Bioinformatics
urmetazoan
OMA
phylogenetics
common-ancestor
updated 16 months ago by
Ram
44k • written 16 months ago by
sina.majidian
▴ 20
1
vote
0
replies
1.0k
views
Job:
Postdoctoral Research position in Bioinformatics and Comparative Genomics
Genomics
OMA
synteny
ancestral
updated 16 months ago by
Ram
44k • written 16 months ago by
sina.majidian
▴ 20
3
votes
8
replies
1.4k
views
syntax errors when running part3 all-against-all
oma
18 months ago by
Sofia
▴ 10
4
votes
2
replies
880
views
Obtaining every"Protein ID" from a genome in OMA
OMA
orthologs
updated 20 months ago by
Adrian Altenhoff
★ 1.1k • written 20 months ago by
christyh
▴ 10
2
votes
1
reply
538
views
Error, (in LoadSpliceMap) string to parse is too long
oma
LoadSpliceMap
omastandalone
orthology
updated 20 months ago by
Adrian Altenhoff
★ 1.1k • written 20 months ago by
ziqing
▴ 10
4
votes
2
replies
831
views
OMA standalone error during database conversion step: Matches between X/X have been computed for different versions of X.
omastandalone
oma
orthology
updated 22 months ago by
Adrian Altenhoff
★ 1.1k • written 22 months ago by
Silvia Prieto
▴ 30
0
votes
1
reply
567
views
To generate genome-wise orthologs including paralogs from OMA
orthologs
homology
annotation
whole
OMA
paralogs
genome
updated 22 months ago by
Adrian Altenhoff
★ 1.1k • written 2.0 years ago by
mzzzzzzzzzz
▴ 40
0
votes
0
replies
362
views
Inferring ancestral relationship between genes with OMA or Ensembl
homology
Compara
OMA
Ensembl
biomart
2.4 years ago by
asente
▴ 30
1
vote
2
replies
754
views
Orthologs distances in OMA
OMA
orthologs
updated 2.4 years ago by
Adrian Altenhoff
★ 1.1k • written 2.4 years ago by
Abel Sousa
• 0
3
votes
1
reply
587
views
Multiple OMA groups per uniprotID in OMAdb
OMA
orthologs
updated 2.5 years ago by
Adrian Altenhoff
★ 1.1k • written 2.5 years ago by
chow
▴ 10
0
votes
2
replies
670
views
Error while running All-against-All alignments in OMA
OMA
parallelization
standalone
qsub
updated 2.7 years ago by
Adrian Altenhoff
★ 1.1k • written 2.7 years ago by
pragyadeeproy
• 0
1
vote
2
replies
966
views
Evolutionary dynamics with OMAmer HOGs (orthoXML file?)
orthologs
OMAmer
HOGs
oma
pyHAM
2.7 years ago by
biomonte
▴ 220
1
vote
2
replies
1.5k
views
OMA standalone:"Error, (in ReadFastaWithNames) length(seqs) = length(refs), assertion failed"
oma
updated 2.8 years ago by
H_gene
• 0 • written 6.0 years ago by
johan.aranberg
• 0
8
votes
14
replies
3.1k
views
Making python script for downloading genomes for OMA Analysis
orthology
python
OMA
updated 2.8 years ago by
patrickdm
▴ 240 • written 2.8 years ago by
anasjamshed
▴ 140
0
votes
1
reply
794
views
OMA speed
orthology
OMA
updated 2.9 years ago by
Adrian Altenhoff
★ 1.1k • written 3.1 years ago by
af1065
• 0
0
votes
1
reply
770
views
OMA standalone "FileStat" error
oma
updated 2.9 years ago by
Adrian Altenhoff
★ 1.1k • written 3.4 years ago by
moiber
• 0
2
votes
6
replies
1.5k
views
HOG without numbering in the genome of the ancestor reconstructed using the pyHAM
HOG
OMA
ancestor
pyHAM
genome
updated 2.6 years ago by
jm440
▴ 10 • written 3.1 years ago by
Maksim Nesterenko
▴ 20
0
votes
1
reply
956
views
OMA output document error
OMA
updated 17 months ago by
Ram
44k • written 3.5 years ago by
Yong
• 0
1
vote
2
replies
934
views
OMA Internet connection error - SLURM
OMA
orthologs
updated 2.9 years ago by
Adrian Altenhoff
★ 1.1k • written 2.9 years ago by
Samuel
• 0
1
vote
1
reply
792
views
oma-cleanup cannot be executed
OMA
updated 3.6 years ago by
Adrian Altenhoff
★ 1.1k • written 3.6 years ago by
Sadie4444
• 0
4
votes
4
replies
1.2k
views
OMA standalone, parallelization
oma
parallelization
sge
qsub
updated 3.6 years ago by
Adrian Altenhoff
★ 1.1k • written 3.6 years ago by
mar.ark.parr
▴ 40
2
votes
1
reply
799
views
Is OMA suitable for prediction of GO function in metagenomic datasets?
OMA
GO_Label
updated 3.7 years ago by
clement.train
▴ 60 • written 3.8 years ago by
crl111222
▴ 10
2
votes
4
replies
1.4k
views
OMA-standalone and sequence gaps
oma
oma-standalone
genome
3.7 years ago by
emmzarrr
• 0
2
votes
2
replies
1.2k
views
OMA Standalone 2.4.2: cannot write to .oma directory
OMA
orthologs
EasyBuild
3.8 years ago by
ed.eyles
▴ 10
5
votes
8
replies
1.2k
views
Downloading all-against-all precomputed for any number of species returns 504 Gateway Time-out
oma
error
3.8 years ago by
m3hdad
▴ 10
12
votes
11
replies
1.8k
views
Error running OMA standalone at HOG computation step
OMA
HOG
error
orthologs
updated 3.9 years ago by
Adrian Altenhoff
★ 1.1k • written 3.9 years ago by
gaurav.diwan
▴ 20
4
votes
9
replies
1.4k
views
Predicting Gene Ontology function in OMA for large datasets
oma
omabrowser
gene_onthology
updated 3.9 years ago by
Adrian Altenhoff
★ 1.1k • written 3.9 years ago by
crl111222
▴ 10
1
vote
1
reply
1.0k
views
Problem running OMA standalone
OMA
standalone
omabrowser
4.0 years ago by
olbei.marton
• 0
6
votes
13
replies
3.1k
views
grid engine problem with OMA
oma
grid engine
cluster
updated 4.0 years ago by
Biostar
20 • written 6.9 years ago by
andrespara
▴ 30
4
votes
2
replies
935
views
OMA standalone estimating memory use for bacterial genomes
oma
orthologs
updated 4.1 years ago by
Adrian Altenhoff
★ 1.1k • written 4.1 years ago by
Andrew Watson
▴ 40
3
votes
1
reply
804
views
OMA error: Gene ontology, darwin
Oma
4.2 years ago by
di
• 0
0
votes
1
reply
1.1k
views
Alignment scores thresholds with DNA
OMA
updated 4.2 years ago by
Adrian Altenhoff
★ 1.1k • written 4.2 years ago by
souzademedeiros
• 0
0
votes
2
replies
1.1k
views
oma -c error report
oma
updated 4.2 years ago by
zx8754
12k • written 4.2 years ago by
Sadie4444
• 0
0
votes
1
reply
877
views
oma -c killed
oma
updated 4.2 years ago by
Ram
44k • written 4.2 years ago by
Sadie4444
• 0
0
votes
1
reply
985
views
can standalone OMA be used on protein fasta (not genome)
OMA
orthologs
updated 4.4 years ago by
Adrian Altenhoff
★ 1.1k • written 4.4 years ago by
fyfes
▴ 70
0
votes
1
reply
968
views
Clusters proteins at each taxonomic rank - OMA
OMA
clustering
updated 4.4 years ago by
Adrian Altenhoff
★ 1.1k • written 4.5 years ago by
anusblat
• 0
1
vote
1
reply
849
views
Error, 'sequence 1 is too long' OMA Standalone
oma
updated 4.5 years ago by
Adrian Altenhoff
★ 1.1k • written 4.5 years ago by
carlosandrecds
• 0
1
vote
4
replies
2.1k
views
OMA not finding numpy; pip and wget failing
oma
slurm
numpy
pip
wget
4.8 years ago by
feander
• 0
6
votes
2
replies
1.0k
views
Cannonical human sequence missing in OMA database?
software error
OMA
R
oma
updated 4.9 years ago by
Christophe Dessimoz
▴ 740 • written 4.9 years ago by
asente
▴ 30
0
votes
3
replies
1.7k
views
start OMA run - file.log
omabrowser
OMA
updated 5.0 years ago by
Biostar
20 • written 6.6 years ago by
dtejadamartinez
▴ 20
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