In our method, protein structures are represented by graphs where the nodes are residues and the edges connect residues found within certain distance from each ...
The development of an efficient subgraph mining technique and its application to finding characteristic substructural patterns within protein structural ...
this report, coherent subgraphs capture discriminative features and afford high accuracy of protein structural classification. ResearchGate Logo. Discover the ...
Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis. J. Huan, W. Wang, A. Washington, J. Prins, R. Shah, and A. Tropsha.
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What are the structural classification of proteins?
Proteins fold into stable three‐dimensional shapes, or conformations, that are determined by their amino acid sequence. The complete structure of a protein can be described at four different levels of complexity: primary, secondary, tertiary, and quaternary structure.
What are the four general classes of protein structure in the protein data bank?
Protein Structure Classification
There are four major levels in this hierarchy: Class, Architecture, Topology (fold family) and Homologous superfamily.
Accurate classification of protein structural families based on coherent subgraph analysis. In Proc. Pacific Symposium on Biocomputing, 2004. [16] P. Indyk ...
We apply a novel frequent subgraph mining algorithm to three graph representations of protein three-dimensional (3D) structure.
May 14, 2020 · Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis. In: Ninth Pacific Symposium on Biocomputing ; 2003.
Proteins are classified into classes/folds/superfamilies/families ... Tropsha, “Accurate Classification of Protein. Structural Families using Coherent Subgraph ...
We have developed an efficient algorithm, namely, index-based protein substructure alignment (IPSA), for protein-fold classification.
Accurate classification of protein structural families us- ing coherent subgraph analysis. In Proceedings of 9th Pacific. Symposium on Biocomputing (PSB'04) ...