Rawi Ramautar. 8.4.2.5 Yeast Metabolome Database (YMDB) The Yeast Metabolome Database (YMDB: www.ymdb.ca) provides ... coli Metabolome Database (ECMDB) The Escherichia coli Metabolome Database (ECMDB, www.ecmdb.ca/about) provides ...
information about the metabolome of E. coli (K-12). Modelled closely on the Human and Yeast Metabolome Databases, the ECMDB con- tains >2600 metabolites with links to ̃1500 different genes and proteins, including enzymes and ...
... E. coli Genes and Metabolic Pathways Genomics/transcriptomics EcoGen 3.0 KEGG http://ecogene.org/ http://www.genome.jp/kegg-bin/show_ organism?org=eco http://regulondb.ccg.unam.mx http://www.ecmdb ... Metabolome Database E. coli Multi ...
... metabolomics field includes two important microbial metabolome databases developed at the University of Alberta (Canada): The Yeast Metabolome Database (YMDB) (http://www.ymdb.ca/) and the E. coli Metabolome Database (ECMDB) (http:// ecmdb ...
... Database) http://geo.nihs.go. jp/csndb/ A data and knowledge base for signaling pathways of human cells. It compiles ... ECMDB (E. coli Metabolome net.de/databases/ biopath.html http://ecmdb.ca/ An expertly curated database ...
... metabolomics data. GigaScience 5: 10. Demir, E., Cary, M.P., Paley, S. et al. (2010). The BioPAX community standard for pathway data sharing. Nat. Biotechnol. 28:935–942. Deutsch, E.W. (2008). mzML: a single, unifying data format for ...
... ECMDB: The E. coli Metabolome Database, Nucleic Acids Research, 2013, 41: D625–D630. Haruki, Y., Hiroaki, K., Jong-Chol, C., and Yasuo, O., Studies on polysaccharides from Angelica acutiloba—IV. Characterization of an anti-complementary ...
Techniques and Applications Kang Ning. Guo AC, et al. ECMDB: the E. coli metabolome database. Nucleic Acids Res. 2012;41(D1): D625–30. Hasin Y, Seldin M, Lusis A. Multi-omics approaches to disease. Genome. Biol. 2017;18(1):83. Heather JM ...
... ECMDB: The E. coli metabolome database. Nucleic Acids Research, 41(Database issue), D625–D630. https://doi.org/10.1093/nar/gks992. Haug, K., Salek, R. M., Conesa, P., Hastings, J., de Matos, P., Rijnbeek, M., et al. (2013). MetaboLights ...
... E. coli Metabolome Database (ECMDB, http://www.ecmdb.ca) [138]. 6.3.2. Metabolomic. applications. in. microbiology. Up to now, metabolomics has been applied in several microbiological fields, including microbial engineering, metabolic ...