4 days ago · Graph Neural Networks (GNNs) have been proposed as a promising method to learn interatomic potentials [10], and many different model architectures have been.
Jun 19, 2024 · For each molecule, the free-energy profile of the intramolecular hydrogen bond was calculated with the GNN, the baseline GB-Neck2 implicit solvent model, and ...
Jun 14, 2024 · An accurate description of the free energy change associated with the transfer of a solute between different phases is crucial for understanding chemical and ...
Jun 19, 2024 · Standard implicit solvent models largely rely on estimating the mean energies and forces of a given environment exerted on a solute by modeling the solvent as a ...
13 hours ago · These networks conceptualize molecules as graphs and treating atoms and bonds as nodes and edges, respectively. This framework allows GNNs to learn directly ...
Jun 18, 2024 · This research focuses on using equivariant graph neural networks MLPs due to their proven effectiveness in modeling equilibrium molecular trajectories. A key ...
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Jun 11, 2024 · MEMS can be further featurized as input for chemical learning. Our solubility prediction with MEMS demonstrated the feasibility of both shallow and deep ...
Jun 11, 2024 · Enhancing Molecular Energy Predictions with Physically Constrained Modifications to the Neural Network ... Solvation Free Energies from Machine Learning Molecular ...
Jun 24, 2024 · In this work, we address these issues by intro- ducing a novel graph neural network model called AEV-PLIG (Atomic Environment. Vector - Protein Ligand ...
Jun 28, 2024 · We ingest a sequence of complete molecular graphs into a dynamic graph neural network (GNN) to predict the graph at the next time step. Our dynamic GNN predicts ...
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