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BrainEXP: a database featuring with spatiotemporal expression variations and co-expression organizations in human brains.
Bioinformatics ( IF 4.4 ) Pub Date : 2019-01-01 , DOI: 10.1093/bioinformatics/bty576
Chuan Jiao 1 , Pengpeng Yan 2, 3 , Cuihua Xia 1 , Zhaoming Shen 2 , Zexi Tan 2 , Yanyan Tan 2 , Kangli Wang 1 , Yi Jiang 1 , Lingling Huang 1 , Rujia Dai 1 , Yu Wei 1 , Yan Xia 1 , Qingtuan Meng 1 , Yanmei Ouyang 2 , Liu Yi 1 , Fangyuan Duan 1 , Jiacheng Dai 1 , Shunan Zhao 1 , Chunyu Liu 1, 4 , Chao Chen 1, 5
Affiliation  

Summary Gene expression changes over the lifespan and varies among different tissues or cell types. Gene co-expression also changes by sex, age, different tissues or cell types. However, gene expression under the normal state and gene co-expression in the human brain has not been fully defined and quantified. Here we present a database named Brain EXPression Database (BrainEXP) which provides spatiotemporal expression of individual genes and co-expression in normal human brains. BrainEXP consists of 4567 samples from 2863 healthy individuals gathered from existing public databases and our own data, in either microarray or RNA-Seq library types. We mainly provide two analysis results based on the large dataset: (i) basic gene expression across specific brain regions, age ranges and sexes; (ii) co-expression analysis from different platforms. Availability and implementation http://www.brainexp.org/. Supplementary information Supplementary data are available at Bioinformatics online.

中文翻译:

BrainEXP:具有人脑中时空表达变化和共表达组织的数据库。

总结基因表达在整个生命周期中都会发生变化,并且在不同的组织或细胞类型中会有所不同。基因共表达也随性别,年龄,不同组织或细胞类型而改变。但是,人脑在正常状态下的基因表达和基因共表达尚未完全定义和量化。在这里,我们介绍了一个名为Brain EXPression数据库(BrainEXP)的数据库,该数据库提供了各个基因的时空表达以及在正常人脑中的共表达。BrainEXP包含来自2863名健康个体的4567个样本,这些样本是从现有的公共数据库和我们自己的数据(采用微阵列或RNA-Seq库类型)收集的。我们主要基于大型数据集提供两个分析结果:(i)跨特定大脑区域,年龄范围和性别的基本基因表达;(ii)来自不同平台的共表达分析。可用性和实施​​http://www.brainexp.org/。补充信息补充数据可从Bioinformatics在线获得。
更新日期:2018-07-07
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