Search Results (130,005)

Gossypium hirsutum is a key fiber crop that is sensitive to environmental factors, particularly drought stress, which can reduce boll size, increase flower shedding, and impair photosynthesis. The aminotransferase (AT) gene is essential for abiotic stress tolerance. A total of 3 Gossypium species were analyzed via genome-wide analysis, and the results unveiled 103 genes in G. hirsutum, 47 in G. arboreum, and 53 in G. raimondii. Phylogenetic analysis, gene structure examination, motif analysis, subcellular localization prediction, and promoter analysis revealed that the GhAT genes can be classified into five main categories and play key roles in abiotic stress tolerance. Using RNA-seq expression and KEGG enrichment analysis of GhTAT2, a coexpression network was established, followed by RT-qPCR analysis to identify hub genes. The RT-qPCR results revealed that the genes Gh_A13G1261, Gh_D13G1562, Gh_D10G1155, Gh_A10G1320, and Gh_D06G1003 were significantly upregulated in the leaf and root samples following drought stress treatment, with Gh_A13G1261 identified as the hub gene. The GhTAT2 genes were considerably enriched for tyrosine, cysteine, methionine, and phenylalanine metabolism and isoquinoline alkaloid, tyrosine, tryptophan, tropane, piperidine, and pyridine alkaloid biosynthesis. Under drought stress, KEGG enrichment analysis manifested significant upregulation of amino acids such as L-DOPA, L-alanine, L-serine, L-homoserine, L-methionine, and L-cysteine, whereas metabolites such as maleic acid, p-coumaric acid, quinic acid, vanillin, and hyoscyamine were significantly downregulated. Silencing the GhTAT2 gene significantly affected the shoot and root fresh weights of the plants compared with those of the wild-type plants under drought conditions. RT-qPCR analysis revealed that GhTAT2 expression in VIGS-treated seedlings was lower than that in both wild-type and positive control plants, indicating that silencing GhTAT2 increases sensitivity to drought stress. In summary, this thorough analysis of the gene family lays the groundwork for a detailed study of the GhTAT2 gene members, with a specific focus on their roles and contributions to drought stress tolerance. Full article

The CRISPR/Cas9 system offers a powerful tool for gene editing to enhance rice productivity. In this study, we successfully edited eight RR-TZF genes in japonica rice Nipponbare using CRISPR-Cas9 technology, achieving a high editing efficiency of 73.8%. Sequencing revealed predominantly short insertions or deletions near the PAM sequence, along with multi-base deletions often flanked by identical bases. Off-target analysis identified 5 out of 31 predicted sites, suggesting the potential for off-target effects, which can be mitigated by designing gRNAs with more than three base mismatches. Notably, new mutations emerged in the progeny of several gene-edited mutants, indicating inheritable genetic mutagenicity. Phenotypic analysis of homozygous mutants revealed varied agronomic traits, even within the same gene, highlighting the complexity of gene-editing outcomes. These findings underscore the importance of backcrossing to minimize off-target and inheritable mutagenicity effects, ensuring more accurate trait evaluation. This study offers insights into CRISPR/Cas9 mechanisms and uncertain factors and may inform future strategies for rice improvement, prompting further research into CRISPR/Cas9’s precision and long-term impacts. Full article

The global navigation satellite system (GNSS) struggles to deliver the precision and reliability required for positioning, navigation, and timing (PNT) services in environments with severe interference. Fifth-generation (5G) cellular networks, with their low latency, high bandwidth, and large capacity, offer a robust communication infrastructure, enabling 5G base stations (BSs) to extend coverage into regions where traditional GNSSs face significant challenges. However, frequent multi-sensor faults, including missing alarm thresholds, uncontrolled error accumulation, and delayed warnings, hinder the adaptability of navigation systems to the dynamic multi-source information of complex scenarios. This study introduces an advanced, tightly coupled GNSS/5G/IMU integration framework designed for distributed PNT systems, providing all-source fault detection with weighted, robust adaptive filtering. A weighted, robust adaptive filter (MCC-WRAF), grounded in the maximum correntropy criterion, was developed to suppress fault propagation, relax Gaussian noise constraints, and improve the efficiency of observational weight distribution in multi-source fusion scenarios. Moreover, we derived the intrinsic relationships of filtering innovations within wireless measurement models and proposed a time-sequential, observation-driven full-source FDE and sensor recovery validation strategy. This approach employs a sliding window which expands innovation vectors temporally based on source encoding, enabling real-time validation of isolated faulty sensors and adaptive adjustment of observational data in integrated navigation solutions. Additionally, a covariance-optimal, inflation-based integrity protection mechanism was introduced, offering rigorous evaluations of distributed PNT service availability. The experimental validation was carried out in a typical outdoor scenario, and the results highlight the proposed method’s ability to mitigate undetected fault impacts, improve detection sensitivity, and significantly reduce alarm response times across step, ramp, and multi-fault mixed scenarios. Additionally, the dynamic positioning accuracy of the fusion navigation system improved to 0.83 m ($1\sigma$). Compared with standard Kalman filtering (EKF) and advanced multi-rate Kalman filtering (MRAKF), the proposed algorithm achieved 28.3% and 53.1% improvements in its $1\sigma$ error, respectively, significantly enhancing the accuracy and reliability of the multi-source fusion navigation system. Full article

Polymer corrosion inhibitors are reported to form dense films on carbon steel surfaces, and their thermostability enables survival in harsh downhole environments. In this paper, PEG-OTs was synthesized by mechanochemistry using ball mill by grafting tosyl on PEG. Using this solvent-free green chemistry, non-toxic PEG and PEG-OTs with various molecular weights (600, 2000, and 10,000 g/mol) were prepared and used as corrosion inhibitors. The corrosion inhibition performance of 5 × 10⁻³ mol/L inhibitors on Q235 carbon steel in 0.5 M HCl solution was investigated using static weight-loss, electrochemical impedance spectroscopy, polarization curves, SEM, and contact angle measurements. The results show that, after modification, PEG-OTs has an elevated corrosion inhibition effect compared to PEG. A maximum of 90% corrosion inhibition efficiency was achieved using static weight-loss. The morphology study shows that a dense film formed to protect carbon steel. Thanks to their polymeric structure, a higher molecular weight leads to better corrosion inhibition. Full article

Grapes are prone to rot and deterioration during storage, seriously affecting their food value. The effects of five extracts, cinnamon, perilla, green tea, pomegranate peel, and ginger, on the microbial growth, weight loss, and sensory quality of grapes were investigated using colony counting and sensory scoring methods. The results showed that perilla and cinnamon extracts had the best effect on maintaining the overall freshness of grapes on the 35th day of storage. The sensory scores were 82 and 80, respectively, and the number of microorganisms was below 6.13 log CFU/g. Further studies revealed that the combination of perilla and cinnamon extracts with Ɛ-polylysine resulted in better inhibition of microbial growth, reduced weight loss, maintained grape quality, and extended storage period to 40 days. An analysis of the active ingredients of the perilla and cinnamon extracts revealed that both extracts contained active antioxidant and antimicrobial ingredients, such as protocatechuic acid, coumaric acid, protocatechuic aldehyde, and rutin. The active ingredients of the perilla extract also included luteolin and apigenin, and those of the cinnamon extract included pinocembrin and epicatechin. These ingredients were deduced to have contributed to preserving the freshness of grapes by the plant extracts. Full article

Parental concerns about the education of children usually reflect deep-seated anxieties. This study identifies the most influential factors shaping these global concerns based on World Values Survey (WVS) data spanning several decades. Using advanced techniques, including feature selection (Adaptive and Gradient Boosting, Pairwise Correlations, LASSO, Bayesian Model Averaging), mixed-effects modeling, cross-validation procedures, different regressions and overfitting, collinearity, and reverse causality checks together with two-way graphical representations, this study identified three enduring predictors: fear of job loss, fear of war, and respondent age. These findings mainly underline the role of socio-economic and geopolitical stability and security and, in addition, that of generational perspectives in shaping global parental priorities. All three predictors were consistent across seven dataset versions, various subsets considering random (ten-folds) or non-random criteria (different values for socio-demographic variables in mixed-effects models), and distinct feature selection approaches. Secondary influences, including opinions regarding the priority of work in life, other fears, and socio-demographic variables (e.g., gender, number of children, marital and professional status, income, education level, community size, etc.) provided more nuances to this study and additional explanatory power. The findings have implications for designing socio-economically sensitive educational policies that address parental priorities and anxieties in diverse global contexts. Full article

PM2.5, a fine particulate matter, poses considerable health risks. When inhaled, PM2.5 can deeply penetrate the lungs, triggering respiratory issues such as pneumonia and bronchitis, aggravating heart and lung conditions, increasing the risk of lung cancer, causing cardiovascular problems, and affecting the nervous, immune, and reproductive systems. This study investigated the protective effects of the combination extract (CRGE) of Thunbergia laurifolia Lindl. (Rang Chuet) water extract (RWE), and Zingiber officinale (ginger) ethanol extract (GEE) against PM2.5-induced oxidative stress in A549 and HepG2 cells. CRGE exhibited superior cytoprotective effects compared to the single extracts (RWE and GEE) by significantly reducing PM2.5-induced cytotoxicity and reactive oxygen species production while enhancing antioxidant enzyme activity. To investigate the effects of PM2.5 exposure on cellular responses, gene expression analysis was conducted on a panel of antioxidant enzymes (heme oxygenase 1, superoxide dismutase, catalase, and glutathione peroxidase), the phase II detoxification enzyme NQO1, and the inflammatory markers interleukin (IL)-6 and IL-8 using the A549 and HepG2 cell lines. CRGE treatment effectively reversed the PM2.5-mediated changes in gene expression in both cell lines, suggesting that it may help restore cellular antioxidant defense mechanisms and mitigate PM2.5-induced oxidative stress. This study showed that CRGE holds promise as a natural antioxidant and cytoprotective agent against PM2.5-induced oxidative stress. Further studies are required to investigate the underlying mechanisms and confirm the efficacy of CRGE in vivo. Full article

Background: The nuclear-encoded enzyme polymerase gamma (Pol-γ) is crucial in the replication of the mitochondrial genome (mtDNA), which in turn is vital for mitochondria and hence numerous metabolic processes and energy production in eukaryotic cells. Variants in the POLG gene, which encodes the catalytic subunit of Pol-γ, can significantly impair Pol-γ enzyme function. Pol-γ-associated disorders are referred to as POLG-spectrum disorders (POLG-SDs) and are mainly autosomal-recessively inherited. Clinical manifestations include muscle weakness and fatigue, and severe forms of the disease can lead to premature death in infancy, childhood, and early adulthood, often associated with seizures, liver failure, or intractable epilepsy. Here, we analyzed fibroblasts from a compound heterozygous patient with the established pathogenic variant c.2419C>T; p.(Arg807Cys) and a previously undescribed variant c.678G>C; p.(Gln226His) with a clinical manifestation compatible with POLG-SDs, sensory ataxic neuropathy, and infantile muscular atrophy. We conducted a battery of functional studies for Pol-γ and mitochondrial dysfunction on the patient’s fibroblasts, to test whether the novel variant c.678G>C; p.(Gln226His) may be causative in human disease. Aims/Methods: We analyzed skin-derived fibroblasts in comparison to a first-degree relative (the mother of the patient), an asymptomatic carrier harboring only the established c.2419C>T; p.(Arg807Cys) mutation. Assessments of mitochondrial function included measurements of mtDNA content, mRNA levels of mitochondrial genes, mitochondrial mass, and mitochondrial morphology. Case Presentation and Results: A 13-year-old male presented with symptoms starting at three years of age, including muscle weakness and atrophy in the lower extremities and facial muscles, which later extended to the upper limbs, voice, and back muscles, without further progression. The patient also reported fatigue and muscle pain after physical activity, with no sensory deficits. Extensive diagnostic tests such as electromyography, nerve conduction studies, muscle biopsy, and MRI were unremarkable. Exome sequencing revealed that he carried the compound heterozygous variants in POLG c.678G>C; p.(Gln226His) and c.2419C>T; p.(Arg807Cys), but no other potential genetic pathogenic causes. In comparison to a first-degree relative (his mother) who only carried the c.2419C>T; p.(Arg807Cys) pathogenic mutation, in vitro analyses revealed a significant reduction in mtDNA content (~50%) and mRNA levels of mtDNA-encoded proteins. Mitochondrial mass was reduced by approximately 20%, and mitochondrial interconnectivity within cells was impaired, as determined by fluorescence microscopy and mitochondrial staining. Conclusions: Our findings suggest that the c.678G>C; p.(Gln226His) variant, in conjunction with the c.2419C>T; p.(Arg807Cys) mutation, may compromise mtDNA replication and mitochondrial function and could result in clinically significant mitochondriopathy. As this study is based on one patient compared to a first-degree relative (but with an identical mitochondrial genome), the pathogenicity of c.678G>C; p.(Gln226His) of POLG should be confirmed in future studies, in particular, in conjunction with other POLG-variants. Full article

Potatoes, a vital global food crop, have shown remarkable adaptability, significantly contributing to food security. Technological advancements now enable their cultivation from soil-based systems to liquid synthetic nutrient media, even in artificial closed environments without natural light or fertile soil. This study examined the effects of Benzylaminopurine (BAP) and Kinetin (Kin) at concentrations ranging from 0 to 5 mg/L and sucrose concentrations ranging from 20 to 120 g/L on in vitro tuberization, focusing on microtuber size, weight, and tuberization rate. Nodal segments from virus-free ‘Red Scarlet’ in vitro potato plantlets were used as explants. These explants were cultured on Murashige and Skoog (MS) medium solidified with 0.5% agar. The study also compared minituber production efficiency under soil-based greenhouse and aeroponic conditions. The highest in vitro potato tuberization rate (90%) was achieved with 80 g/L sucrose and 3.0 mg/L BAP. After induction, virus-free microtubers were transferred to both greenhouse conditions and aeroponic systems for further assessment of minituber production and biochemical composition. These findings demonstrate the potential of aeroponics as a superior method for producing high-quality, pathogen-free minitubers. Aeroponics resulted in significantly higher minituber yields compared to soil-based greenhouse systems, offering a scalable and efficient solution for seed production. Full article

Endothelial dysfunction is an early pathophysiological event in atherosclerosis. The endothelial-protective abilities of diethylether extract (EE) from the Gentiana kochiana (Gentianaceae) herb and its main component, xanthone aglycone gentiacaulein (GC), were evaluated in an oxidized low-density lipoprotein (oxLDL)-treated EA.hy926 endothelial cell line. The EE and GC actions were assessed using cell viability assays, flow cytometry, immunoblot, DPPH, NBT, TBARS, conjugated diene formation, and Griess tests. Both EE and GC prevented oxLDL-induced apoptosis by reducing intracellular reactive oxygen species levels, mitochondrial depolarization, and caspase activation in EA.hy926 cells. EE and GC dose-dependently diminished oxLDL-induced cellular lipid peroxidation. In cell-free conditions, EE moderately scavenged superoxide anions and had no affinity toward DPPH radicals, GC did not interact with either of investigated free radicals, while both EE and GC effectively delayed Cu²⁺-induced LDL oxidation. EE and GC upregulated oxLDL-suppressed protective Akt/CREB/eNOS and ERK signals and restored oxLDL-reduced nitric oxide levels. Therefore, EE and GC effectively counteract oxLDL-induced endothelial apoptosis by reducing oxidative stress, promoting mitochondrial recovery, and enhancing the prosurvival Akt/CREB/eNOS axis and ERK activity. Our study is the first to demonstrate that xanthone-rich EE from aerial parts of G. kochiana and xanthone GC alleviate oxLDL-induced endothelial cell injury, underscoring their potential for cardiovascular protection. Full article

Leeches play a critical role in the transmission of digenean trematodes, yet their parasitic infections remain understudied in the Baltic region. This study investigates the diversity, prevalence, and molecular identification of trematode infections in freshwater leeches from central Lithuania. A total of five leech species (Alboglossiphonia heteroclita, Glossiphonia complanata, Glossiphonia verrucata, Helobdella stagnalis, and Erpobdella octoculata) were examined using compression and dissection techniques to detect trematode cysts, which were predominantly found in the soft tissues rather than the intestinal tract. Molecular sequencing of 18S rRNA, COI, and ITS markers, combined with phylogenetic analyses, confirmed the presence of three trematode genera: Cotylurus, Australapatemon, and Posthodiplostomum. The overall infection rate among leeches was 40.8%, with the highest prevalence observed in G. complanata (53.3%). Cotylurus spp. were the most frequently detected parasites, with genetic analyses revealing close affinities to Cotylurus syrius and Cotylurus spp. from Poland. Australapatemon species were also identified, though species-level classification remained inconclusive. Notably, this study provides the first molecular evidence of Posthodiplostomum cuticola utilizing leeches as intermediate hosts, extending the known range of hosts for this trematode. Phylogenetic analyses demonstrated the broad geographic distribution of these parasites, with close genetic matches to isolates from Poland, Russia, Canada, and Japan. The findings highlight the ecological significance of leeches in parasite transmission networks and contribute to the understanding of trematode diversity and host interactions in the Baltic region. Further molecular and ecological studies are needed to clarify species diversity and the role of leeches in the life cycles of aquatic parasites. Full article

Reducing dehydrogenation temperature while preserving high hydrogen generation capacity obstructs the hydrolysis of sodium borohydrides (NaBH₄). The two-dimensional (2D) MAX phase of titanium aluminum carbide (Ti₃AlC₂) and MXene (Ti₃C₂T_x) multilayers was investigated for hydrogen generation via NaBH₄ hydrolysis with and without light. The material was characterized using X-ray diffraction (XRD), Fourier transform infrared (FT-IR), transmission electron microscopy (TEM), high-resolution TEM (HR-TEM), scanning electron microscopy (SEM), and diffuse reflectance spectroscopy (DRS). The activity of Ti₃AlC₂ was significantly enhanced by the integration of UV light radiation during hydrolysis. Ti₃AlC₂/Ti₃C₂T_x improved the dehydrogenation rates of NaBH₄ at ambient conditions and maintained high hydrogen generation rates (HGRs) over time compared to a conventional method. It exhibited a HGR of 200–300 mL·min⁻¹·g⁻¹. Photo-assisted hydrolysis over the catalyst can be maintained for several times at ambient temperature. The catalyst demonstrated effective performance even after five cycles of usage. Full article

Background/Objectives: Sarcopenia is an emergent prognostic biomarker in clinical oncology. Albeit increasingly defined through skeletal muscle index (SMI) thresholding, the literature cut-offs fail to discern heterogeneous baseline muscularity across populations. This study assesses the prognostic impact of using cohort-specific SMI thresholds in a Portuguese metastatic non-small-cell lung cancer (mNSCLC) cohort. Methods: Retrospective study including mNSCLC patients treated between January 2017 and December 2022. ImageJ v1.54 g was used to assess cross-sectional CT imaging at the third lumbar vertebra (L3) and calculate L3SMI. Sarcopenia was defined both according to Prado et al. and L3SMI thresholds derived from receiver operating characteristic analysis. Overall survival (OS) was the primary endpoint. Secondary endpoints included first-line (1L) progression-free survival (PFS) and sarcopenia subgroup analysis regarding body mass index impact on OS. Results: The initial cohort included 197 patients. Mean age was 65 years (±11.31). Most tumors were adenocarcinomas (n = 165) and presented with metastasis (n = 154). SMI was evaluable in 184 patients: cohort-specific thresholds (<49.96 cm²/m² for men; <34.02 cm²/m² for women) yielded 46.74% sarcopenic patients (n = 86) versus 66.30% (n = 122) per the literature definition. Cohort-specific thresholds predicted both OS (12.75 versus 21.13 months, hazard ratio [HR] 1.654, p = 0.002) and PFS (7.92 versus 9.56 months, HR 1.503, p = 0.01). Among sarcopenic patients, overweight (HR 0.417, p = 0.01) and obesity (HR 2.723, p = 0.039) had contrasting impacts on OS. Conclusions: Amid reclassification of nearly one-fifth of the cohort, cohort-specific thresholds improved sarcopenia prognostication in mNSCLC. Homogeneity regarding both cancer treatment setting and ethnicity could be key to defining sarcopenia based on SMI. Full article

Background and Aim: Inflammatory bowel disease (IBD), which comprises ulcerative colitis (UC) and Crohn’s disease (CD), is characterized by chronic inflammation and fluctuating disease activity. This study aimed to evaluate serum tryptophan (TRP) and its metabolites as potential biomarkers for predicting disease activation in comparison to fecal calprotectin (FC). Methods: This prospective study included 115 patients (77 with UC and 38 with CD). Disease activity was assessed based on clinical and endoscopic findings. Serum TRP levels and their metabolites were measured using liquid chromatography–tandem mass spectrometry (LC-MS/MS), whereas FC levels were analyzed using an enzyme-linked immunosorbent assay (ELISA). Results: Serum TRP levels ≤ 11,328.41 ng/mL predicted disease activation with 72.1% sensitivity and 62.7% specificity, whereas FC levels ≥ 89.60 µg/g showed 84.2% sensitivity and 67.6% specificity. The TRP-to-C-reactive protein (CRP) ratio (TRP/CRP) demonstrated superior diagnostic accuracy, with an area under the curve (AUC) of 0.847. Conclusions: The TRP/CRP ratio is a novel and comprehensive approach for predicting disease activation in IBD patients. Although FC remains the gold standard, TRP and its metabolites provide valuable complementary insights. Further research is required to validate these findings in larger cohorts. Full article

Plant-based milk substitutes are becoming increasingly popular in the food industry. Among different plant proteins, chickpea proteins (CP) offer unique qualities as good functional and nutritional properties, followed by pleasant taste. This study examines the ability of the production of o/w emulsions resembling milk analogue (3% w/w chickpea protein, 3% w/w canola oil) by using chickpea protein isolate with/without the enzyme transglutaminase (TG) (50 U/g of protein). As a reference material, commercial soymilk was used. The emulsions were characterized by particle size distribution, zeta potential, viscosity, and microstructure. The TG-crosslinked chickpea protein milk analogue demonstrated improved stability, characterized by enhanced zeta potential (−24.7 mV) and extended shelf life compared to chickpea protein milk analogue without TG and soymilk. Stable particle size distribution (D[3,2] 0.11–0.17 µm) and shear-thinning behaviour (viscosity values of 2.16 mPas at 300 1/s) additionally contributed to their stability and desirable viscosity. Overall, chickpea protein milk analogue crosslinked by TG presents a promising alternative to traditional and plant-based milk products, offering clean-label, functional, and shelf-stable formulations. The additional optimization of protein concentration and processing conditions could enhance the overall functionality even further. Full article