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20 pages, 6004 KiB  
Article
Online Detection and Fuzzy Clustering of Anomalies in Non-Stationary Time Series
by Changjiang He, David S. Leslie and James A. Grant
Signals 2024, 5(1), 40-59; https://doi.org/10.3390/signals5010003 - 24 Jan 2024
Cited by 2 | Viewed by 1291
Abstract
We consider the challenge of detecting and clustering point and collective anomalies in streaming data that exhibit significant nonlinearities and seasonal structures. The challenge is motivated by detecting problems in a communications network, where we can measure the throughput of nodes, and wish [...] Read more.
We consider the challenge of detecting and clustering point and collective anomalies in streaming data that exhibit significant nonlinearities and seasonal structures. The challenge is motivated by detecting problems in a communications network, where we can measure the throughput of nodes, and wish to rapidly detect anomalous traffic behaviour. Our approach is to train a neural network-based nonlinear autoregressive exogenous model on initial training data, then to use the sequential collective and point anomaly framework to identify anomalies in the residuals generated by comparing one-step-ahead predictions of the fitted model with the observations, and finally, we cluster the detected anomalies with fuzzy c-means clustering using empirical cumulative distribution functions. The autoregressive model is sufficiently general and robust such that it provides the nearly (locally) stationary residuals required by the anomaly detection procedure. The combined methods are successfully implemented to create an adaptive, robust, computational framework that can be used to cluster point and collective anomalies in streaming data. We validate the method on both data from the core of the UK’s national communications network and the multivariate Skoltech anomaly benchmark and find that the proposed method succeeds in dealing with different forms of anomalies within the nonlinear signals and outperforms conventional methods for anomaly detection and clustering. Full article
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13 pages, 1426 KiB  
Article
Early Initiation of Adalimumab Significantly Diminishes Postoperative Crohn’s Disease Endoscopic Recurrence and Is Superior to 6-Mercaptopurine Therapy: An Open-Label, Randomized Controlled Study
by Ayal Hirsch, Erez Scapa, Naomi Fliss-Isakov, Hagit Tulchinsky, Eran Itzkowitz, Yehuda Kariv, Yulia Ron, Henit Yanai, Ian White, Sharief Yassin, Nathaniel Aviv Cohen, Eli Brazovski, Iris Dotan and Nitsan Maharshak
J. Clin. Med. 2023, 12(24), 7600; https://doi.org/10.3390/jcm12247600 - 10 Dec 2023
Cited by 2 | Viewed by 1105
Abstract
Postoperative recurrence (POR) is the rule in patients with Crohn’s disease (CD), mitigated with prophylactic therapy. The evidence for therapeutic choice and timing of intervention is lacking. We aimed to compare the rates of POR in patients treated early with prophylactic 6-mercaptopurine (6-MP) [...] Read more.
Postoperative recurrence (POR) is the rule in patients with Crohn’s disease (CD), mitigated with prophylactic therapy. The evidence for therapeutic choice and timing of intervention is lacking. We aimed to compare the rates of POR in patients treated early with prophylactic 6-mercaptopurine (6-MP) or adalimumab. We conducted a prospective single-center randomized open-label clinical study in which patients in surgical remission following their first ileocecectomy were randomized to receive early treatment with 6-MP or adalimumab. Patients were followed up clinically every 3 months and underwent endoscopy at weeks 32 and 58 postoperatively. The primary endpoint was endoscopic recurrence (ePOR) at 1 year (week 58), defined as a Rutgeerts score ≥ i2. We enrolled 35 patients (25 males, mean age 35 ± 1.4 years, median disease duration 5 ± 6.1 years) following ileocecectomy. Of these, seven (20%) were current smokers and nine (26%) biologics-experienced. Patients allocated to adalimumab had significantly less ePOR than patients treated with 6MP at week 32 (21% vs. 69%, p = 0.004) and 58 (47% vs. 75%), (p = 0.03, HR = 0.39, 95% CI = 0.16–0.93). POR was associated with an increased diameter of the resected small bowel surgical specimen, lower baseline body mass index (BMI), increased week 18 fecal calprotectin, increased week 18 serum alanine aminotransferase and decreased week 18 hemoglobin level. Adalimumab was more effective than 6-MP in preventing ePOR. Increased operative small bowel diameter and lower postoperative BMI were associated with ePOR. At eighteen weeks, serum hemoglobin, ALT and fecal calprotectin levels were predictive of endoscopic disease recurrence. (ClinicalTrials.gov ID NCT01629628). Full article
(This article belongs to the Special Issue Management of Crohn's Disease and Ulcerative Colitis)
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11 pages, 1327 KiB  
Article
A Lymph Node Ratio Model for Prognosis of Patients with Pancreatic Neuroendocrine Tumors
by Esther Osher, Eiman Shalabna, Joseph M. Klausner, Yona Greenman, Naftali Stern, Oren Shibolet, Erez Scapa, Oz Yakir, Dana Ben-Ami Shor, Iddo Bar-Yishay, Sivan Shamai, Yael Sofer, Nir Lubezky, Yaacov Goykhman, Guy Lahat, Ido Wolf, Sharon Pelles, Asaf Aizic, Arye Blachar and Ravit Geva
Biomedicines 2023, 11(2), 407; https://doi.org/10.3390/biomedicines11020407 - 30 Jan 2023
Cited by 2 | Viewed by 1627
Abstract
The objective of this study was to determine the prognostic value of lymph node (LN) involvement and the LN ratio (LNR) and their effect on recurrence rates and survival in patients with pancreatic neuroendocrine tumors (PNETs) undergoing surgery. This single-center retrospective study reviewed [...] Read more.
The objective of this study was to determine the prognostic value of lymph node (LN) involvement and the LN ratio (LNR) and their effect on recurrence rates and survival in patients with pancreatic neuroendocrine tumors (PNETs) undergoing surgery. This single-center retrospective study reviewed the medical records of 95 consecutive patients diagnosed with PNETs who underwent surgery at our medical center between 1997 and 2017. The retrieved information included patient demographics, pathology reports, treatments, and oncological outcomes. Results: 95 consecutive potentially suitable patients were identified. The 78 patients with PNETs who underwent surgery and for whom there was adequate data were included in the analysis. Their mean ± standard deviation age at diagnosis was 57.4 ± 13.4 years (range 20–82), and there were 50 males (64%) and 28 females (36%). 23 patients (30%) had LN metastases (N1). The 2.5- and 5-year disease-free survival (DFS) rates for the entire cohort were 79.5% and 71.8%, respectively, and their 2- and 5-year overall survival (OS) rates were 85.9% and 82.1%, respectively. The optimal value of the LNR was 0.1603, which correlated with the outcome (2-year OS p = 0.002 HR = 13.4 and 5-year DFS p = 0.016 HR = 7.2, respectively, and 5-year OS and 5-year DFS p = 0.004 HR = 9 and p = 0.001 HR = 10.6, respectively). However, the multivariate analysis failed to show that the LNR was an independent prognostic factor in PNETs. Patients with PNETs grade and stage are known key prognostic factors influencing OS and DFS. According to our results, LNR failed to be an independent prognostic factor. Full article
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12 pages, 1374 KiB  
Article
The Cytotoxic Effect of Isolated Cannabinoid Extracts on Polypoid Colorectal Tissue
by Dana Ben-Ami Shor, Ilan Hochman, Nathan Gluck, Oren Shibolet and Erez Scapa
Int. J. Mol. Sci. 2022, 23(19), 11366; https://doi.org/10.3390/ijms231911366 - 26 Sep 2022
Cited by 6 | Viewed by 4359
Abstract
Purified cannabinoids have been shown to prevent proliferation and induce apoptosis in colorectal carcinoma cell lines. To assess the cytotoxic effect of cannabinoid extracts and purified cannabinoids on both colorectal polyps and normal colonic cells, as well as their synergistic interaction. Various blends [...] Read more.
Purified cannabinoids have been shown to prevent proliferation and induce apoptosis in colorectal carcinoma cell lines. To assess the cytotoxic effect of cannabinoid extracts and purified cannabinoids on both colorectal polyps and normal colonic cells, as well as their synergistic interaction. Various blends were tested to identify the optimal synergistic effect. Methods: Biopsies from polyps and healthy colonic tissue were obtained from 22 patients undergoing colonic polypectomies. The toxicity of a variety of cannabinoid extracts and purified cannabinoids at different concentrations was evaluated. The synergistic effect of cannabinoids was calculated based on the cells’ survival. Isolated cannabinoids illustrated different toxic effects on the viability of cells derived from colorectal polyps. THC-d8 and THC-d9 were the most toxic and exhibited persistent toxicity in all the polyps tested. CBD was more toxic to polypoid cells in comparison to normal colonic cells at a concentration of 15 µM. The combinations of the cannabinoids CBDV, THCV, CBDVA, CBCA, and CBGA exhibited a synergistic inhibitory effect on the viability of cells derived from colon polyps of patients. Isolated cannabinoid compounds interacted synergistically against colonic polyps, and some also possessed a differential toxic effect on polyp and adjacent colonic tissue, suggesting possible future therapeutic value. Full article
(This article belongs to the Section Molecular Endocrinology and Metabolism)
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