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16 pages, 15649 KiB  
Article
Captive Breeding and Early Developmental Dynamics of Cirrhinus mrigala: Implications for Sustainable Seed Production
by Saeed Akram Khan, Shahid Sherzada, Qurat-ul-Ain Ahmad, Ali Hussain, Nimra Hussain and Joanna Nowosad
Animals 2024, 14(19), 2799; https://doi.org/10.3390/ani14192799 - 27 Sep 2024
Viewed by 196
Abstract
Cirrhinus mrigala is an important edible fish with a significant aquaculture contribution in Southeast Asian countries. The current study aims to enhance our understanding of the developmental biology of Cirrhinus mrigala, which is crucial for implementing sustainable fish farming practices. To induce [...] Read more.
Cirrhinus mrigala is an important edible fish with a significant aquaculture contribution in Southeast Asian countries. The current study aims to enhance our understanding of the developmental biology of Cirrhinus mrigala, which is crucial for implementing sustainable fish farming practices. To induce spermiation and ovulation in Cirrhinus mrigala brooders, the synthetic hormone Ovaprim® (GnRH + dopamine inhibitor) was administrated as a single injection dose of 0.2 mL/kg to males and 0.4 mL/kg to females. After induction, the fish spawned, and the eggs produced were fertilized artificially and cell division commenced successfully. The characteristics of each larval developmental stage were closely observed and recorded using a time-lapse imaging technique. The fertilized eggs were spherical, demersal, and non-adhesive throughout their incubation period. The spawned eggs ranged in diameter from 2.1 mm to 2.13 mm and possessed circular yolk sacs. The gastrula stage initiated approximately 4 h after fertilization, with 25% of the yolk sphere covered by blastoderm, reaching 75% coverage at the end of the gastrula stage, approximately 6 h post fertilization. Organogenesis was marked by the formation of notochord and the visibility of rudimentary organs such as the heart, eyes, and gills, followed by tail movement, which was observed at the time of hatching. Compared to other cyprinid fishes, C. mrigala exhibited distinct features at certain stages of embryonic development. Blood circulation was observed to start at the onset of hatching. The lengths of the newly hatched larvae ranged from 2.9 to 3.2 mm, smaller than other reports on induced breeding in carps. The findings of the present study provide a detailed reference for the embryonic development of C. mrigala, which will assist its future research endeavors and large-scale seed production for sustainable aquaculture. Full article
(This article belongs to the Special Issue Early Development and Growth of Fishes: 2nd Edition)
16 pages, 7470 KiB  
Article
A New Species of Cyprinid Genus Opsariichthys (Teleostei: Cyprinidae) from the Pearl River, Southern China
by Jia-Bo Chen, Ying-Tao Li, Jia-Jun Zhou, Cheng Li, Guo-Xi Weng, Hung-Du Lin and Jun-Jie Wang
Diversity 2024, 16(10), 596; https://doi.org/10.3390/d16100596 - 27 Sep 2024
Viewed by 239
Abstract
A new cyprinid fish, Opsariichthys rubriventris sp. nov., is described from the Xizhijiang River, a tributary of the Pearl River basin in Huizhou City, Guangdong Province, southern China. The species is distinguished from all other congeners by the following combination of characters: predorsal [...] Read more.
A new cyprinid fish, Opsariichthys rubriventris sp. nov., is described from the Xizhijiang River, a tributary of the Pearl River basin in Huizhou City, Guangdong Province, southern China. The species is distinguished from all other congeners by the following combination of characters: predorsal scales 13–14; lower jaw projecting slightly beyond upper jaw; cheek with two mainly longitudinal rows of tubercles; and lower jaw, belly, pectoral fin, and anterior margin of anal fin in adult males being reddish-orange. The principal component analysis result of the morphological data indicated that O. rubriventris sp. nov. could be clearly distinguished fromfour other congeners. The phylogenetic analysis conducted in this study, utilizing both Maximum Likelihood (ML) and Bayesian Inference (BI) methods, supported the monophyly of the novel species O. rubriventris sp. nov. at the species level. Additionally, the genetic distance analysis revealed that O. rubriventris sp. nov. exhibits a genetic distance ranging from 0.14 to 0.16 with its congeneric species, further affirming its taxonomic status. Full article
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16 pages, 7789 KiB  
Article
First Experimental Application of DNA-Layered Salmonid Alphavirus-Based Replicon Vaccine in Non-Salmonid Fish: Induced Early Semi-Specific Protection against Spring Viraemia of Carp Virus (SVCV) in Common Carp (Cyprinus carpio)
by Flóra Abonyi, Edit Eszterbauer, Ferenc Baska, Tímea Hardy and Andor Doszpoly
Animals 2024, 14(18), 2698; https://doi.org/10.3390/ani14182698 - 18 Sep 2024
Viewed by 414
Abstract
Our study demonstrates the first application of the salmonid alphavirus-based replicon vector system (pSAV) as a DNA vaccine in a non-salmonid fish species, in common carp (Cyprinus carpio) against spring viraemia of carp virus (SVCV). SAV replicon encoding the glycoprotein of [...] Read more.
Our study demonstrates the first application of the salmonid alphavirus-based replicon vector system (pSAV) as a DNA vaccine in a non-salmonid fish species, in common carp (Cyprinus carpio) against spring viraemia of carp virus (SVCV). SAV replicon encoding the glycoprotein of the SVCV was used as a DNA-layered plasmid, and its efficacy was compared with a previously described conventional DNA vaccine construct (pcDNA3.1 based vector) and with a control group (pcDNA3.1-empty-plasmid) in an SVCV challenge at a water temperature of 14 ± 1 °C. Vaccine prototypes were administered intramuscularly at a dose of 0.1 µg/g of fish (n = 25 per group). The DNA-layered SAV replicon resulted in 88% survival, compared to around 50% in all other groups. The DNA-layered pSAV vaccination induced the innate immune genes at the injection site, and increased IgM upregulation was also observed. Our preliminary results show that the SAV-based replicon construct may serve as a potential vaccine candidate for the protection of non-salmonid fish in the future provided that further clinical and field trials confirm its efficiency. Full article
(This article belongs to the Section Veterinary Clinical Studies)
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12 pages, 2058 KiB  
Article
Exploring Biodiversity and Food Webs in Sulfur Cave in the Vromoner Canyon on the Greek–Albanian Border
by Serban M. Sarbu, Traian Brad, Raluca I. Băncilă and Andrei Ştefan
Diversity 2024, 16(8), 477; https://doi.org/10.3390/d16080477 - 6 Aug 2024
Viewed by 1020
Abstract
Sulfidic caves support diverse and abundant subterranean communities, including numerous endemic species and complex food webs, though the full extent of species diversity and resource utilization in these ecosystems remains largely unexplored. This paper presents the results of biological surveys conducted from 2023 [...] Read more.
Sulfidic caves support diverse and abundant subterranean communities, including numerous endemic species and complex food webs, though the full extent of species diversity and resource utilization in these ecosystems remains largely unexplored. This paper presents the results of biological surveys conducted from 2023 to 2024 in Sulfur Cave, located in the Vromoner Canyon on the Greek–Albanian border, focusing on microbial, vertebrate, and invertebrate communities and investigating the structure of the subterranean food web. The microbial communities from the different biofilms are dominated by chemosynthetic sulfur-oxidizing microorganisms, specifically filamentous bacteria such as Thiotrix and Beggiatoa. Two species of fish, an eel (Anguilla sp.) and a Cyprinid (Alburnoides sp.), and six bat species from three families (Rhinolophidae, Miniopteridae, and Vespertilionidae) were documented. The invertebrate fauna includes five aquatic species, 25 terrestrial species, and four amphibiotic species. Among these, eight species are endemic, and seven species exhibit troglomorphic traits. Stable isotope analysis showed light carbon and nitrogen values for the terrestrial and aquatic invertebrates, suggesting that subterranean communities rely on food produced in situ by chemoautotrophic microorganisms. Our results identified cave areas of significant biological relevance and provided reference data to inform conservation actions aimed at preserving the biodiversity of this sulfidic cave. Full article
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33 pages, 4331 KiB  
Article
Host Jump of an Exotic Fish Rhabdovirus into a New Class of Animals Poses a Disease Threat to Amphibians
by Eveline J. Emmenegger, Emma K. Bueren, Carla M. Conway, George E. Sanders, A. Noble Hendrix, Tamara Schroeder, Emiliano Di Cicco, Phuc H. Pham, John S. Lumsden and Sharon C. Clouthier
Viruses 2024, 16(8), 1193; https://doi.org/10.3390/v16081193 - 25 Jul 2024
Viewed by 1041
Abstract
Spring viremia of carp virus (SVCV) is a rhabdovirus that primarily infects cyprinid finfishes and causes a disease notifiable to the World Organization for Animal Health. Amphibians, which are sympatric with cyprinids in freshwater ecosystems, are considered non-permissive hosts of rhabdoviruses. The potential [...] Read more.
Spring viremia of carp virus (SVCV) is a rhabdovirus that primarily infects cyprinid finfishes and causes a disease notifiable to the World Organization for Animal Health. Amphibians, which are sympatric with cyprinids in freshwater ecosystems, are considered non-permissive hosts of rhabdoviruses. The potential host range expansion of SVCV in an atypical host species was evaluated by testing the susceptibility of amphibians native to the Pacific Northwest. Larval long-toed salamanders Ambystoma macrodactylum and Pacific tree frog Pseudacris regilla tadpoles were exposed to SVCV strains from genotypes Ia, Ib, Ic, or Id by either intraperitoneal injection, immersion, or cohabitation with virus-infected koi Cyprinus rubrofuscus. Cumulative mortality was 100% for salamanders injected with SVCV, 98–100% for tadpoles exposed to virus via immersion, and 0–100% for tadpoles cohabited with SVCV-infected koi. Many of the animals that died exhibited clinical signs of disease and SVCV RNA was found by in situ hybridization in tissue sections of immersion-exposed tadpoles, particularly in the cells of the gastrointestinal tract and liver. SVCV was also detected by plaque assay and RT-qPCR testing in both amphibian species regardless of the virus exposure method, and viable virus was detected up to 28 days after initial exposure. Recovery of infectious virus from naïve tadpoles cohabited with SVCV-infected koi further demonstrated that SVCV transmission can occur between classes of ectothermic vertebrates. Collectively, these results indicated that SVCV, a fish rhabdovirus, can be transmitted to and cause lethal disease in two amphibian species. Therefore, members of all five of the major vertebrate groups (mammals, birds, reptiles, fish, and amphibians) appear to be vulnerable to rhabdovirus infections. Future research studying potential spillover and spillback infections of aquatic rhabdoviruses between foreign and domestic amphibian and fish species will provide insights into the stressors driving novel interclass virus transmission events. Full article
(This article belongs to the Special Issue The World of Rhabdoviruses)
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12 pages, 1190 KiB  
Article
Fish of Low Commercial Value in Lakes of Different Trophic Status (Poland)
by Krystyna Kalinowska, Dariusz Ulikowski, Michał Kozłowski, Piotr Traczuk, Maciej Szkudlarek, Konrad Stawecki and Andrzej Kapusta
Diversity 2024, 16(8), 437; https://doi.org/10.3390/d16080437 - 24 Jul 2024
Viewed by 513
Abstract
In a commercial fishery, some fish are classified as low-value, but their classification varies in different countries. The aim of this study was to determine the abundance, contribution, and dominance of low-value fish species, such as Abramis brama < 1000 g, Alburnus alburnus [...] Read more.
In a commercial fishery, some fish are classified as low-value, but their classification varies in different countries. The aim of this study was to determine the abundance, contribution, and dominance of low-value fish species, such as Abramis brama < 1000 g, Alburnus alburnus, Blicca bjoerkna, Gymnocephalus cernua, Perca fluviatilis < 100 g, Rutilus rutilus < 200 g, and Scardinius erythrophthalmus < 200 g, in 145 Polish lakes of different areas, depths, and trophic statuses situated in the northern and central parts of Poland in 2021. Perca fluviatilis and R. rutilus were the most frequent low-value species (100% and 99%, respectively). The contribution of all low-value fish to the total biomass of caught fish was relatively high, ranging from 37% in the mesotrophic lake to 100% in the eutrophic lake (mean of 77 ± 14%). Lakes in which the contribution of low-value species exceeded 90% were relatively numerous (24 lakes, 17% of the studied lakes). Among a total of about 437.5 thousand low-value fish, 261 thousand specimens (60%) had a body weight of below 10 g. All low-value fish species, except for P. fluviatilis and S. erythrophthalmus, were related to the studied environmental variables. The relative biomass of these species increased with increasing lake productivity, while it decreased with the increasing maximum and mean depth of the studied lakes. The high contribution of low-value fish to the total biomass in many lakes indicates the need for the constant monitoring of the abundance and structure of fish communities and the use of appropriate actions (biomanipulation and stocking with piscivorous fish species) to improve the ecological condition of lakes. Full article
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17 pages, 1522 KiB  
Review
Ecology and Sustainable Conservation of the Nase, Chondrostoma nasus: A Literature Review
by Michaël Ovidio and Billy Nzau Matondo
Sustainability 2024, 16(14), 6007; https://doi.org/10.3390/su16146007 - 14 Jul 2024
Viewed by 954
Abstract
Cyprinid fish play a major role in riverine ecosystems because of their high abundance, variety of life-history patterns, and habitat requirements. The nase (Chondrostoma nasus) is an algivorous, rheophilic, lithophilic, and oxyphilic species and is very pollution-sensitive. Thus, it represents a [...] Read more.
Cyprinid fish play a major role in riverine ecosystems because of their high abundance, variety of life-history patterns, and habitat requirements. The nase (Chondrostoma nasus) is an algivorous, rheophilic, lithophilic, and oxyphilic species and is very pollution-sensitive. Thus, it represents a good indicator for habitat quality in the lower rhithral and upper potamal zones of the European river system. Due to its high level of ecological requirements, the species is very sensitive to human disturbance, leading to habitat loss and river fragmentation, climatic disruption causing a modification of hydrological and thermal regimes, organic and inorganic chemical water pollution, as well as sediment deposition. Its populations are declining in most of its distribution areas. This paper aims to synthesise the scientific knowledge on the different aspects of the nase ecology thanks to consultation of the scientific literature by addressing the following themes: European repartition, morphology and identification, reproduction and life cycle, diet, movement dynamics of adults and juveniles, and the characteristics of spawning grounds and habitats of juveniles and adults. We also provide an overview of the impact of human activities and climate shifts on natural ecology and conservation and present restoration measures based on the results of some studies that have successfully improved their habitats and/or preserved their populations. A series of key research questions are identified that should stimulate new research on this species as well as conservation measures for sustainable conservation. This paper may be particularly of interest to researchers in aquatic and fisheries sciences, river managers, and environmental conservationists. Full article
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13 pages, 3997 KiB  
Article
Effect of Heat Shock Treatment on the Virulence of Grass Carp Reovirus in Rare Minnow Gobiocypris rarus
by Qinwei Ni, Yanchang Fan, Simin Xiao and Liqun Lu
Viruses 2024, 16(6), 921; https://doi.org/10.3390/v16060921 - 5 Jun 2024
Viewed by 670
Abstract
The mode and outcome of fish–virus interactions are influenced by many abiotic factors, among which water temperature is especially important in poikilothermic fish. Rare minnow Gobiocypris rarus is a eurythermal small cyprinid fish that is sensitive to infection with genotype II grass carp [...] Read more.
The mode and outcome of fish–virus interactions are influenced by many abiotic factors, among which water temperature is especially important in poikilothermic fish. Rare minnow Gobiocypris rarus is a eurythermal small cyprinid fish that is sensitive to infection with genotype II grass carp reovirus (GCRV). HSP70, a conservative and key player in heat shock response, is previously identified as an induced pro-viral factor during GCRV infection in vitro. Here, rare minnow was subjected to heat shock treatment (HST), 1 h treatment at 32 °C followed by reverting to a normal temperature of 24 °C, and subsequently challenged with GCRV-II at a dosage of 1 × LD50. The effect of HST on GCRV virulence in vivo was evaluated by calculating virus-associated mortality and viral load in both dead and survival fish. The results revealed that HST enhanced the mortality of rare minnow infected with GCRV; the fact that viral loads in the tissue samples of HST-treated fish were significantly higher than those in samples of the control group at 6, 8 d p.i. reflected a faster infection process due to HST. Quantitative gene expression analysis was further employed to show that the expression levels of Hsp70 in intestine and liver tissues from the HST group declined faster than muscle tissue after HST. HST W/O GCRV challenge upregulated proinflammatory cytokines such as MyD88 and Nf-κB, which was in consistence with the inflammation observed in histopathological analysis. This study shed light on the complexity of the interaction between fish abiotic and biotic stress response, which suggested that HST, an abiotic stress, could enhance the virulence of GCRV in Gobiocypris rarus that involved modulating the gene expression of host heat shock, as well as a pro-inflammatory response. Full article
(This article belongs to the Special Issue Host Cell-Virus Interaction, 3rd Edition)
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13 pages, 2422 KiB  
Article
Investigation of the Antiviral Mechanism of Curcumin Analog EF-24 against Siniperca cachuatsi Rhabdovirus
by Pei-Mo Ju, Shi-Wei Ma, Yi-Yang Li, Shi-Fan Zhang, Jun Li and Guang-Zhou Zhou
Fishes 2024, 9(5), 179; https://doi.org/10.3390/fishes9050179 - 15 May 2024
Viewed by 992
Abstract
Siniperca chuatsi rhabdovirus (SCRV) is a major strain of viral fish virus resulting in multiple transmissions and devastating damage in aquaculture. Currently, there are no available approved therapeutics. In this study, we screened and identified a novel curcumin analog (EF-24) for evaluating its [...] Read more.
Siniperca chuatsi rhabdovirus (SCRV) is a major strain of viral fish virus resulting in multiple transmissions and devastating damage in aquaculture. Currently, there are no available approved therapeutics. In this study, we screened and identified a novel curcumin analog (EF-24) for evaluating its in vitro anti-SCRV properties and potential molecular mechanisms. Present results demonstrated that EF-24 could strongly delay the occurrence of cytopathic effects (CPEs) in epithelioma papulosum cyprinid cells (EPCs) and inhibit SCRV replication and viral nucleoprotein expression in the early stages of infection by the time-of-addition assay. Furthermore, flow cytometry analysis after Annexin V-FITC/PI double staining and immunofluorescence microscopy observation after JC-1 incubation showed that EF-24 downregulated cell mitochondrial apoptosis induced by SCRV. The enzymatic activities of caspase-3 and caspase-9 were also reduced after EF-24 treatment, indicating that EF-24 may protect cells from SCRV infection by decreasing mitochondrial intrinsic apoptosis in infected cells. Collectively, we demonstrated for the first time that the curcumin analog EF-24 possesses antiviral ability against SCRV, suggesting its potential for effective control of fish rhabdovirus spreading. Full article
(This article belongs to the Section Welfare, Health and Disease)
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17 pages, 3499 KiB  
Article
Environmental DNA Characterization of the Fish Species Composition in the Mukawa River and Adjacent Habitats
by Hyojin Ahn and Michael J. Miller
Fishes 2024, 9(4), 147; https://doi.org/10.3390/fishes9040147 - 21 Apr 2024
Viewed by 1343
Abstract
The diverse freshwater fish fauna of the Japanese archipelago is distributed among four main island landmasses, which include Hokkaido in the north, with many diadromous species. One relatively well-preserved river drainage along the southern coast of Central Hokkaido is the Mukawa River. Fish [...] Read more.
The diverse freshwater fish fauna of the Japanese archipelago is distributed among four main island landmasses, which include Hokkaido in the north, with many diadromous species. One relatively well-preserved river drainage along the southern coast of Central Hokkaido is the Mukawa River. Fish fauna surveys in the Mukawa River were mostly in downstream areas and the fish diversity is not well-documented among the upper, lower river, and coastal environments. Fish communities in the river, estuary, and sea were sampled using eDNA analysis to evaluate upstream and downstream species detections, and tidal and spatial detection variation near the river mouth. The number of species was higher at the river mouth and nearshore sites compared to the river and offshore. Fish detections reflected life history categories (freshwater resident, diadromous, brackish, or marine) and the environments. Similarity analysis showed that fish species compositions were divided into (1) upstream and midstream, (2) downstream and river mouth, (3) adjacent shore, and (4) offshore. Salmonid, cyprinid, loach, and sculpin species were detected in the river, compared to a mixture of species downstream and along the coast. This rapid assessment type study demonstrated that eDNA survey methodology would be effective for multiple river comparative surveys, seasonality studies, or evaluating possible effects of cross-river weirs or dams. Full article
(This article belongs to the Section Biology and Ecology)
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24 pages, 7826 KiB  
Article
Suitable Cottonseed Protein Concentrate Supplementation in Common Carp (Cyprinus carpio) Serves as an Effective Strategy for Fish Meal Sparing Based on Improvement in Intestinal Antioxidant Capacity, Barrier and Microbiota Composition
by Ze Fan, Kaibo Ge, Di Wu, Liansheng Wang, Jinnan Li, Chenhui Li, Meng Zhou, Haitao Zhang, Linghong Miao and Xianping Ge
Antioxidants 2024, 13(4), 436; https://doi.org/10.3390/antiox13040436 - 4 Apr 2024
Viewed by 1281
Abstract
The application of cottonseed protein concentrate (CPC) is an effective strategy to moderate the shortage of fish meal (FM) for the aquafeed industry. However, little attention has been paid to the effects of replacing fishmeal with CPC on cyprinid fish. This study used [...] Read more.
The application of cottonseed protein concentrate (CPC) is an effective strategy to moderate the shortage of fish meal (FM) for the aquafeed industry. However, little attention has been paid to the effects of replacing fishmeal with CPC on cyprinid fish. This study used common carp (Cyprinus carpio) as the biological model and assessed the potential of applying CPC as a substitute for fishmeal in the diet of common carp. The proportion of fish meal substituted with CPC in the six diets was 0% (CPC0), 25% (CPC25), 50% (CPC50), 75% (CPC75), and 100% (CPC100). Each diet was fed to three replicate groups of common carp (4.17 ± 0.02 g) for 56 days. Results revealed that the CPC50 group significantly increased the growth indexes via up-regulating the genes of the GH/IGF axis and the TOR pathway. The intestinal digestive ability was also elevated in the CPC50 group via markedly increasing intestinal villus height, protease and lipase activities in the whole intestine, and the amylase activity of the foregut and midgut. The CPC50 group captured significantly higher activities and gene expressions of antioxidant enzymes and lower malonaldehyde contents via evoking the Nrf2/Keap1 signal pathway. The CPC50 group enhance the intestinal mechanical barrier via up-regulating the gene expressions of tight junction proteins and heighten the intestinal biological barrier by increasing the probiotics (Lactococcus) and decreasing the harmful bacteria (Enterococcus). But excessive substitution levels (75% and 100%) would compromise growth performance, intestinal antioxidant capacity, and immune function. The optimum substitution level was estimated to be 46.47%, 47.72%, and 46.43% using broken-line regression analyses based on mass gain rate, protein efficiency ratio, and feed conversion rate. Overall, the fishmeal in common carp feed could be substituted up to 50% by CPC without negative influence on growth, feed utilization, and or intestinal health. Full article
(This article belongs to the Special Issue Oxidative Stress and Nutrition in Aquatic Animals)
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14 pages, 2782 KiB  
Article
Molecular Mechanisms of Growth Differences in Gymnocypris przewalskii and Gymnocypris eckloni through a Comparative Transcriptome Perspective
by Yun Zhao and Junming Zhou
Fishes 2024, 9(3), 89; https://doi.org/10.3390/fishes9030089 - 28 Feb 2024
Viewed by 1550
Abstract
Genetic composition plays a crucial role in the growth rate of species, and transcriptomics provides a potent tool for studying genetic aspects of growth. We explored the growth rates and transcriptomes of the Cyprinids G. przewalskii (GP) and G. eckloni (GE). A total [...] Read more.
Genetic composition plays a crucial role in the growth rate of species, and transcriptomics provides a potent tool for studying genetic aspects of growth. We explored the growth rates and transcriptomes of the Cyprinids G. przewalskii (GP) and G. eckloni (GE). A total of 500 individuals of G. przewalskii and G. eckloni, matched in size, were separately cultured for 9 months in six cement tanks (each group with three replicates). Growth indices were measured, revealing that the growth rate of GE was greater than that of GP (p < 0.05), while there was no significant difference in survival rates (p > 0.05). Simultaneously, we conducted RNA-Seq on the muscles of both GP and GE. The results indicated a significant difference of gene expression between GP and GE, identifying 5574 differentially expressed genes (DEGs). Quantitative real-time reverse transcription–polymerase chain reaction of 10 DEGs demonstrated consistency in expression profiles with the results from the RNA-Seq analysis. The DEGs were significantly enriched in glycolysis/gluconeogenesis (ko00010), arachidonic acid formation (ko00061), arginine biosynthesis (ko00220), and the MAPK (ko04013), PI3K-Akt (ko04151), mTOR (ko04150), and TGF-β (ko04350) signal pathways, as revealed by Gene Ontology (GO) enrichment and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. This study also identified some growth-related DEGs, such as IGF2, Noggin, Decorin and others. Notably, the low expression of IGF2 may be a factor contributing to the slower growth of GP than GE. Full article
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16 pages, 3734 KiB  
Article
Integrative Taxonomy Clarifies the Historical Flaws in the Systematics and Distributions of Two Osteobrama Fishes (Cypriniformes: Cyprinidae) in India
by Boni Amin Laskar, Dhriti Banerjee, Sangdeok Chung, Hyun-Woo Kim, Ah Ran Kim and Shantanu Kundu
Fishes 2024, 9(3), 87; https://doi.org/10.3390/fishes9030087 - 27 Feb 2024
Viewed by 1448
Abstract
The taxonomy and geographical distributions of Osteobrama species have historically posed challenges to ichthyologists, leading to uncertainties regarding their native ranges. While traditional taxonomy has proven valuable in classification, the utility of an integrated approach is restricted for this particular group due to [...] Read more.
The taxonomy and geographical distributions of Osteobrama species have historically posed challenges to ichthyologists, leading to uncertainties regarding their native ranges. While traditional taxonomy has proven valuable in classification, the utility of an integrated approach is restricted for this particular group due to limitations in combining information from biogeography, morphology, and genetic data. This study addresses the taxonomic puzzle arising from the recent identification of Osteobrama tikarpadaensis in the Mahanadi and Godavari Rivers, casting doubt on the actual distribution and systematics of both O. tikarpadaensis and Osteobrama vigorsii. The research reveals distinctions among specimens resembling O. vigorsii from the Krishna and Godavari riverine systems. Notably, specimens identified as O. vigorsii from the Indian Museum exhibit two pairs of barbels, while those from the Godavari River in this study are identified as O. tikarpadaensis. Inter-species genetic divergence and maximum likelihood phylogeny provide clear delineation between O. vigorsii and O. tikarpadaensis. The study suggests that O. vigorsii may be limited to the Krishna River system in southern India, while O. tikarpadaensis could potentially extend from the Mahanadi River in central India to the Godavari River in southern India. Proposed revision to morphological features for both species, accompanied by revised taxonomic keys, aim to facilitate accurate differentiation among Osteobrama congeners. The data generated by this research provide a resource for future systematic investigations into cyprinids in India and surrounding regions. Further, the genetic diversity information obtained from various riverine systems for Osteobrama species will be instrumental in guiding aquaculture practices and formulating effective conservation action plans. Full article
(This article belongs to the Special Issue Biomonitoring and Conservation of Freshwater & Marine Fishes)
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19 pages, 2981 KiB  
Article
Debating the Rules: An Experimental Approach to Assess Cyprinid Passage Performance Thresholds in Vertical Slot Fishways
by Filipe Romão, Ana L. Quaresma, Joana Simão, Francisco J. Bravo-Córdoba, Teresa Viseu, José M. Santos, Francisco J. Sanz-Ronda and António N. Pinheiro
Water 2024, 16(3), 439; https://doi.org/10.3390/w16030439 - 29 Jan 2024
Cited by 2 | Viewed by 1095
Abstract
Throughout the world, emerging barriers in river systems block longitudinal connectivity for migrating fish, causing significant impacts by precluding them from carrying out vital life cycle activities. Fishways are still the main mitigation solution implemented, where barrier removal is not feasible. Within the [...] Read more.
Throughout the world, emerging barriers in river systems block longitudinal connectivity for migrating fish, causing significant impacts by precluding them from carrying out vital life cycle activities. Fishways are still the main mitigation solution implemented, where barrier removal is not feasible. Within the multiple technical fish passage devices, the vertical slot fishway (VSF) is considered the most reliable. Early design guidelines, established for cyprinids, indicate that the volumetric dissipation power (Pv) in the pools should be Pv < 150 Wm−3, while most frequent slope values range from 10 to 12%. In this study, an experimental approach was conducted to question and debate the validity of these recommendations. For this, the Iberian barbel (Luciobarbus bocagei, Steindachner, 1864) passage performance was assessed in a full-scale fishway that exceeded Pv design guidelines, under different configurations. These varied in discharge (Q) and mean pool water depth (hm): VSF1 (Q = 81 Ls−1; hm = 0.55 m); VSF2 (Q = 110 Ls−1; hm = 0.80 m); and the same design was equipped with a deep notch: DN1 (Q = 71 Ls−1; hm = 0.55 m); DN2 (Q = 99 Ls−1; hm = 0.80 m). The slope was set to 15.2% while the head drop per pool was Δh = 0.28 m, which generated a Pv that ranged from 222 in VSF1 to 187 Wm−3 in DN2. Passage behaviour was assessed using PIT telemetry and time-to-event analysis to evaluate the barbel upstream passage using standardized metrics: (i) motivation (ii) ascend success, and (iii) transit time. The hydrodynamic scenarios experienced by fish were characterized through a numerical model using computational fluid dynamics (CFD). The results, contrary to what was expected, showed a higher performance in VSF1 confirmed by the ascent analysis and transit time. Although no differences were found in fish motivation, the results indicate that larger fish displayed lower times to perform the first passage attempt. The CFD results show that, although maximum velocities and turbulence (turbulent kinetic energy (TKE) and Reynolds shear stress (RSS)) do not change significantly between configurations, their distribution in the pools is quite different. Regarding TKE, larger volumes with magnitudes higher than 0.05 m2s−2 were notorious in both DN1 and DN2 configurations compared to VSF1, influencing passage efficiency which is in line with the ascent and transit time metrics results. Overall, the present research undeniably debates the literature design guidelines and reinforces the need to jointly assess species-specific fish passage criteria and fishway hydrodynamics, whereas precaution should be taken when using very general recommendations. Full article
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14 pages, 1064 KiB  
Article
An Observational Study of Skeletal Malformations in Four Semi-Intensively Reared Carp Species
by Caterina Varvara, Edmond Hala, Mariasevera Di Comite, Rosa Zupa, Letizia Passantino, Gianluca Ventriglia, Angelo Quaranta, Aldo Corriero and Chrysovalentinos Pousis
Vet. Sci. 2024, 11(1), 30; https://doi.org/10.3390/vetsci11010030 - 12 Jan 2024
Viewed by 1632
Abstract
Cyprinids include some of the most widely farmed freshwater species. The aim of this study was to assess the incidence of skeletal malformations in carp species reared in semi-intensive systems in Albania: common carp (Cyprinus carpio), silver carp (Hypophthalmichthys molitrix [...] Read more.
Cyprinids include some of the most widely farmed freshwater species. The aim of this study was to assess the incidence of skeletal malformations in carp species reared in semi-intensive systems in Albania: common carp (Cyprinus carpio), silver carp (Hypophthalmichthys molitrix), grass carp (Ctenopharyngodon idella) and bighead carp (Hypophthalmichthys nobilis). The common carp fingerlings had a mean total length of 28.9 ± 5.0 mm; the frequencies of individuals with at least one anomaly and at least one severe anomaly were 79.2% and 43.4%, respectively. The silver carp juveniles had a mean total length of 21.6 ± 2.1 mm; the frequencies of individuals with at least one anomaly and one severe anomaly were 93.1% and 57.5%, respectively. The grass carp fry had a mean total length of 33.5 ± 2.6 mm; all the analyzed specimens showed almost one anomaly and 86.4% showed at least one severe anomaly. The bighead carp juveniles had a mean total length of 34.4 ± 5.7 mm; the frequencies of individuals with at least one anomaly and at least one severe anomaly were 95.0% and 62.5%, respectively. The development of a more suitable feeding protocol for herbivorous species and the setting up of more efficient broodstock management protocols are suggested to reduce the high incidence of skeletal malformations. Full article
(This article belongs to the Special Issue New Approach to Reducing and Preventing Fish Disease)
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