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Items: 1 to 20 of 1291

1.

Mock communities - ONT

Evaluation of DNA extraction kits for long-read shotgun metagenomics using Oxford Nanopore sequencing for rapid taxonomic and antimicrobial resistance detection

Project data type: Other
Scope:
Monoisolate
Institute of Medical Microbiology
Accession:
PRJEB75510
ID:
1192878
2.

Phytobenthos DNA extraction optimisation

The impact of DNA extraction methodology for multi-kingdom river biofilm community analysis

Project data type: Other
Scope:
Monoisolate
UK Centre for Ecology and Hydrology
Accession:
PRJEB71824
ID:
1192862
3.

Temperature incubations of microbial communities from two different locations in Fram Strait

Project data type: Other
Scope:
Monoisolate
German Federation for Biological Data
Accession:
PRJEB81706
ID:
1180435
4.

Host depletion in pig and human colon samples

Project data type: Other
Scope:
Monoisolate
University of California San Diego Microbiome Initiative
Accession:
PRJEB81804
ID:
1179823
5.

Single Cell RNA Sequencing of Synovial Tissue in Adolescents Undergoing ACL Reconstruction

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Musculoskeletal Institute, Atrium Health
Accession:
PRJNA1179366
ID:
1179366
6.

BLADE-R: streamlined RNA extraction for molecular diagnostics and high-throughput applications.

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Li Lab, pathology, UVA School of Medicine
Accession:
PRJNA1165700
ID:
1165700
7.

The lifespan and kinetics of human Dendritic Cell subsets and their precursors in health and inflammation

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB79968
ID:
1164566
8.

Ribo-depleted total RNA-seq of oocytes in 3M mice after natural and superovulation

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB67724
ID:
1164113
9.

Transcriptomic profiling of LLC LeptoM vector control, Nr1h2/3 DKO and RXRa/b/g TKO upon stimulation with 1μM 9 cis-retinoic acid (RA) in vitro

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Dr. Adrienne Boire, HOPP, MSKCC
Accession:
PRJNA1162927
ID:
1162927
10.

Patch-Seq of seven 5-HT neuronal subpopulations in zebrafish whole brain

Organism:
Danio rerio
Taxonomy:
Danio rerio (zebrafish)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Neuroscience, School of Medcine, Tongji University, 42508444-9
Accession:
PRJNA1160211
ID:
1160211
11.

Metabarcoding of a mock community of soil invertebrates: DNA extraction, false-positives, and data filtration

Project data type: Raw sequence reads
Scope:
Multispecies
A.N. Severtsov Institute of Ecology and Evolution of the Russian Academy of Sciences
Accession:
PRJNA1157715
ID:
1157715
12.

RBBP5 is an epigenetic regulator of mammalian hepatic 12h oscillator [ChIP-seq]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
University of Pittsburgh
Accession:
PRJNA1155193
ID:
1155193
13.

Genomic characterization of normal and aberrant human milk production [bulkRNA-seq]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Department of Bioengineering and Therapeutic Sciences, Institute for Human Genetics, University of California San Francisco
Accession:
PRJNA1152268
ID:
1152268
14.

Targeting heterogeneous tumor microenvironments in pancreatic cancer mouse models of metastasis by TGFB depletion

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Department of Oncology, Johns Hopkins University School of Medicine
Accession:
PRJNA1151736
ID:
1151736
15.

Specific pre-plasma cell states and local proliferation at the dark zone – medulla interface characterize germinal center-derived plasma cell differentiation in lymph node (Figure2) 1

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
PMLAB, CIML
Accession:
PRJNA1149484
ID:
1149484
16.

Single cell RNAseq of murine tissues after, sham operation, myocaradial infarction (MI) or MI and sleep fragmentation (SF)

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
ImmunoBio, Human Immune Monitoring Center
Accession:
PRJNA1149085
ID:
1149085
17.

Colias eurytheme

Colias eurytheme Bab ChIP-seq pupal wings at 40% and 60% development

Taxonomy:
Colias eurytheme (orange sulphur)
Project data type: Epigenomics
Scope:
Monoisolate
The George Washington University
Accession:
PRJNA1148116
ID:
1148116
18.

Identification of SIRT3 as an eraser for H3K9 lactylation by antibody-mediated proximity labeling strategy

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Epigenomics
Scope:
Multiisolate
Tianjin Medical University
Accession:
PRJNA1147570
ID:
1147570
19.

Less Deformable Erythrocyte Subpopulations Biomechanically Induce Endothelial Inflammation in Sickle Cell Disease

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Bhasin Lab, School of Medicine, Emory University
Accession:
PRJNA1145994
ID:
1145994
20.

Structural perturbation of chromatin domains with multiple developmental regulators can severely impact gene regulation and development [RNA-seq-blastocyst]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Unit on Genome Structure and Regulation, NICHD, National Institutes of Health
Accession:
PRJNA1145435
ID:
1145435

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