GEO DataSets

(Submitter supplied) Analysis of genome DNA methylation level

Organism:

Citrullus lanatus

Type:

Methylation profiling by high throughput sequencing

Platform:

GPL28123

34 Samples

Download data: BEDGRAPH

(Submitter supplied) Analysis of gene expression level. The hypothesis tested in the present study was that 5-azacytidine affects fruit ripening.

Organism:

Citrullus lanatus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23842

30 Samples

Download data: XLSX

(Submitter supplied) The rate, timing, and mode of species dispersal is recognized as a key driver of the structure and function of communities of macroorganisms, and may be one ecological process that determines the diversity of microbiomes. Many previous studies have quantified the modes and mechanisms of bacterial motility using monocultures of a few model bacterial species. But most microbes live in multispecies microbial communities, where direct interactions between microbes may inhibit or facilitate dispersal through a number of physical (e.g., hydrodynamic) and biological (e.g., chemotaxis) mechanisms, which remain largely unexplored. more...

Organism:

Serratia sp. BW106

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22269

6 Samples

Download data: XLSX

(Submitter supplied) 10 + 10 Holstein x Charolais F2 cattle were assigned to 2 groups with high and low IMF content, respectively; Musculus longissimus dorsi mRNA expression was determined by microarray analysis

Organism:

Bos taurus

Type:

Expression profiling by array

Platform:

GPL2112

20 Samples

Download data: CEL

(Submitter supplied) Sugarcane accumulates high concentrations of sucrose in the mature stalk, with numerous physiological processes in maturing stalk tissue both directly and indirectly involved. A considerable portion of carbohydrate metabolism is also devoted to cell wall synthesis and fibre production. Previously, we have identified differentially expressed transcripts correlated with sucrose accumulation and fibre production in various internodes of the sugarcane stalk. more...

Organism:

Saccharum officinarum; Saccharum hybrid cultivar Q117

Type:

Expression profiling by array

Platform:

GPL3844

9 Samples

Download data: CEL

(Submitter supplied) Investigation gene expression level changes in four different melon fruits at four different developmental satges Transcriptomic analysis of developing melon fruits from two climacteric (cvs. Védrantais and Dulce) and two non-climacteric (cv. Piel de sapo and accession PI 161375) at 15, 25, 35 Days After Pollination (DAP) and Harvest stage

Organism:

Cucumis melo

Type:

Expression profiling by array

Platform:

GPL13748

41 Samples

Download data: TXT

(Submitter supplied) The postharvest senescence processes of citrus fruits were analyzed transcriptomic. The present study was aimed to: further uncover the rind-flesh communication of hesperidium; characterize the differential storage behaviors of different citrus varieties; reveal the important changes during storing process; and demonstrate the specific non-climacteric characteristics of citrus fruits.

Organism:

Citrus unshiu; Citrus maxima; Citrus sinensis; Citrus reticulata

Type:

Expression profiling by array

Platform:

GPL5731

96 Samples

Download data: CEL

(Submitter supplied) We developed a commercially available whole-transcriptome sorghum microarray (Sorgh-WTa520972F) and generated this dataset to identify tissue and genotype-specific expression patterns for all identified Sorghum bicolor exons and UTRs. The genechip contains 1,026,373 probes covering 149,182 exons (27,577 genes) across the Sorghum bicolor nuclear, chloroplast and mitochondrial genomes. Specific probesets were also included for putative non-coding RNAs that may play a role in gene regulation (e.g., microRNAs), and confirmed functional small RNAs in related species (corn and sugarcane) were also included in our array design.

Organism:

Saccharum hybrid cultivar; Zea mays subsp. mays; Sorghum bicolor

Type:

Expression profiling by array; Non-coding RNA profiling by array

Platform:

GPL17576

78 Samples

Download data: CEL

(Submitter supplied) Total RNA was isolated from different tissues (leaf, stem and flesh, rind and placenta of the fruits) using TRIzol reagent and small RNA libraries were generated from four cucurbit species: bottle gourd (Lagenaria siceraria (accession Grif 1617 collection from India)), Cucurbita moschata (accession Grif 14244 Early Butternut) Cucurbita pepo (accession NSL98075 Table King), and watermelon (Citrullus lanatus var. more...

Organism:

Citrullus lanatus; Cucurbita pepo; Cucurbita moschata; Lagenaria siceraria

Type:

Non-coding RNA profiling by high throughput sequencing

4 related Platforms

4 Samples

Download data: TXT

(Submitter supplied) Samples from fruit juice vesicle tissue from three lemon genotypes (Frost Lisbon, Faris "sour" and Faris "sweet") differing in fruit acidity were compared at two developmental timepoints (immature, mature). Faris lemon appears to be a graft chimera with the L2 layer derived from normal acid lemon and layer L1 from Millsweet limetta or a closely related genotype. Fruit of Faris sour and Faris sweet grew on different branches of the same tree, with sour fruit developing on branches with L1 and L2 from acid lemon.

Organism:

Citrus x limon; Citrus sinensis

Type:

Expression profiling by array

Platform:

GPL5731

18 Samples

Download data: CEL

(Submitter supplied) affy_diversity_maize - affy_diversity_maize - Maize, Zea mays, is one of the most widely grown crops in the world as it provides cereal grain for human purposes and feedstock for cattle. Maize is increasingly used as a biomass fuel, such as ethanol. Studies have shown that maize stem is made up of different lignified cell types: epidermis, sclerenchyma (a few layers under the epidermis and surrounding vascular bundles in the rind), parenchyma (mostly lignified near the epidermis). more...

Organism:

Zea mays

Type:

Expression profiling by array

Platform:

GPL4032

4 Samples

Download data: CEL

(Submitter supplied) affy_en-tj_maize - affy_en_maize - Maize, Zea mays, is one of the most widely grown crops in the world as it provides cereal grain for human purposes and feedstock for cattle. Maize is increasingly used as a biomass fuel, such as ethanol. Studies have shown that maize stem is made up of different lignified cell types: epidermis, sclerenchyma (a few layers under the epidermis and surrounding vascular bundles in the rind), parenchyma (mostly lignified near the epidermis). more...

Organism:

Zea mays

Type:

Expression profiling by array

Platform:

GPL4032

4 Samples

Download data: CEL

(Submitter supplied) affy_en-tj_maize - affy_tj_maize - Maize, Zea mays, is one of the most widely grown crops in the world as it provides cereal grain for human purposes and feedstock for cattle. Maize is increasingly used as a biomass fuel, such as ethanol. Studies have shown that maize stem is made up of different lignified cell types: epidermis, sclerenchyma (a few layers under the epidermis and surrounding vascular bundles in the rind), parenchyma (mostly lignified near the epidermis). more...

Organism:

Zea mays

Type:

Expression profiling by array

Platform:

GPL4032

4 Samples

Download data: CEL

(Submitter supplied) affy_cellwall_maize - affy_cellwall_maize - Maize, Zea mays, is one of the most widely grown crops in the world as it provides cereal grain for human purposes and feedstock for cattle. Maize is increasingly used as a biomass fuel, such as ethanol. Studies have shown that maize stem is made up of different lignified cell types: epidermis, sclerenchyma (a few layers under the epidermis and surrounding vascular bundles in the rind), parenchyma (mostly lignified near the epidermis). more...

Organism:

Zea mays

Type:

Expression profiling by array

Platform:

GPL4032

10 Samples

Download data: CEL

(Submitter supplied) In mandarin (Citrus reticulata Blanco), rind separation is an essential trait for marketing, as it confers easy-peeling, an inheritable trait whose genetic basis has not yet been characterized. To this end, we used the 30 K Affymetrix Citrus GeneChip to compare gene expression in albedo tissues of an easy-peeling genotype (Clementine Nules) to a less easy-peeling hybrid genotype (Lee x Nova, USDA 88-2) at three time points: before, at and after the onset of rind separation. more...

Organism:

Citrus sinensis; Citrus reticulata

Type:

Expression profiling by array

Platform:

GPL5731

16 Samples

Download data: CEL, CHP