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Mechanism of the Glycosidic Bond Cleavage of Mismatched Thymine in Human Thymine DNA Glycosylase Revealed by Classical Molecular Dynamics and Quantum Mechanical/Molecular Mechanical Calculations

2015 ◽  
Vol 119 (38) ◽  
pp. 12365-12380 ◽  
Author(s):  
Natalia Kanaan ◽  
Ramon Crehuet ◽  
Petra Imhof
Keyword(s):  
Molecular Dynamics ◽  
Bond Cleavage ◽  
Dna Glycosylase ◽  
Glycosidic Bond ◽  
Quantum Mechanical ◽  
Thymine Dna Glycosylase ◽  
Classical Molecular Dynamics ◽  
Glycosidic Bond Cleavage

Reaction Mechanism for the N-Glycosidic Bond Cleavage of 5-Formylcytosine by Thymine DNA Glycosylase

2019 ◽  
Vol 123 (19) ◽  
pp. 4173-4179 ◽  
Author(s):  
Eli Naydenova ◽  
Johannes C. B. Dietschreit ◽  
Christian Ochsenfeld
Keyword(s):  
Reaction Mechanism ◽  
Bond Cleavage ◽  
Dna Glycosylase ◽  
Glycosidic Bond ◽  
Thymine Dna Glycosylase ◽  
Glycosidic Bond Cleavage

Evidence of gas-phase pyranose-to-furanose isomerization in protonated peptidoglycans

2021 ◽  
Author(s):  
Shanshan Guan ◽  
Benjamin J. Bythell
Keyword(s):  
Gas Phase ◽  
Bond Cleavage ◽  
Glycosidic Bond ◽  
Glycosidic Bond Cleavage

Protonated peptidoglycans isomerize prior to glycosidic bond cleavage.

Phosphodiester and N-glycosidic bond cleavage in DNA induced by 4–15 eV electrons

2006 ◽  
Vol 124 (6) ◽  
pp. 064710 ◽  
Author(s):  
Yi Zheng ◽  
Pierre Cloutier ◽  
Darel J. Hunting ◽  
J. Richard Wagner ◽  
Léon Sanche
Keyword(s):  
Bond Cleavage ◽  
Glycosidic Bond ◽  
Glycosidic Bond Cleavage

A theoretical and mass spectrometry study of the novel mechanism of N-glycosidic bond cleavage in nucleoside

2009 ◽  
Vol 282 (1-2) ◽  
pp. 1-5 ◽  
Author(s):  
Jihong Liu ◽  
Shuxia Cao ◽  
Bin Jia ◽  
Donghui Wei ◽  
Xincheng Liao ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Bond Cleavage ◽  
Glycosidic Bond ◽  
The Novel ◽  
Mass Spectrometry Study ◽  
Glycosidic Bond Cleavage
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