Big Picture: Genes, Genomes and Health
Big Picture: Genes, Genomes and Health
Big Picture: Genes, Genomes and Health
Picture
bringing CUTTING-EDGE SCIENCE INto THE CLASSROOM
The
wonder
of you
Exploring your
genetic identity
and
er
s
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Picture
x
th
are leng contain the yribonu
The order of the t c
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d C. ases
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three-letter ‘wor ):
in the code.
All in sequence
Why is determining an organism’s genome sequence important?
Most types of cell in an organism window on to evolution and recent human Others are important for maintaining
contain a complete copy of its genome. history – including the migration of people health, or have potential use in the
The organisation is quite complicated, around the world. DNA can also provide clues industrial production of biologically
but the simplest fact about any genome in police work, from crime scene samples, active chemicals and enzymes.
is that it is a collection of DNA sequences and can help to identify disaster victims. Genomic information is used to track
– long strings of the chemical ‘letters’ A, The genome sequences of other species harmful bacteria such as those that cause
T, G and C (adenine, thymine, guanine and have many other uses. The genomes infection in hospitals, as well as to aid
cytosine) in a particular order. of organisms used in farming, from rice the development of new drugs. New flu
Learn to read an organism’s genome and wheat to pigs and cattle, are being strains have their genomes read quickly
sequence, and compare it with that of sequenced to help to breed improved to understand how the virus spreads and
other organisms, and it can tell you lots strains. But the vast majority of the many to speed up vaccine production.
of different things. hundreds of genomes already completed Knowledge of genome sequences also
The human genome sequence contains a are from bacteria. Some are species that speeds up developments in biotechnology,
wealth of information about human biology, cause diseases in people, as well as in and is finding uses in tracking biodiversity
in both health and disease. Our DNA is a agriculturally important animals or plants. and policing trade in protected species.
1961 – Marshall Nirenberg and Johann Matthaei read the first DNA
‘word’, three letters that code for a single amino acid in a protein.
1970
The rest of the genetic code is worked out within five years.
s
s Genome Project – to map, then sequence the entire
complement of human DNA – gets underway.
1977 – Fred Sanger and
Walter Gilbert develop 1995 – Genome of the bacterium
efficient methods for DNA Haemophilus influenzae published, with
sequencing. Sanger’s 1.8 million base pairs (the first genome
team sequences the first of a non-viral organism to be sequenced).
DNA genome, that of the
bacterium-infecting virus 1996 – Yeast genome
phi X174. 199 published, containing 6000
0s genes (the first eukaryotic cell
1981 – Human mitochondrial genome to be sequenced).
genome sequence published by 198
Fred Sanger and colleagues. 0s 1999 – 1999 – First human
Fruit fly chromosome
2000 – UK Prime Minister Tony Blair and US genome sequence – number
President Bill Clinton announce a ‘working draft’ published. 22 – published.
of the human genome, produced by researchers
working in the public and private sectors.
$1000 genome
Alexander Kalina/iStockphoto
january 2010 3
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Introducing
the genome
Many of the scientists working to decode the human genome
were surprised to find far fewer genes than expected.
Subsequent work continues to uncover interesting features
of the human genome, which has proved to be so much more
than just a collection of genes. What makes up the human
genome? How does it compare with those of other organisms?
Adrian Brooks
Great expectations James Watson, co-discoverer of DNA’s double helical structure.
Adrian Brooks
Gene number Whose genes?
The reference human genome combines
the DNA of several people.
The original of ‘the’ human genome was a reference
sequence, compiled by analysing DNA from blood
samples donated by a handful of anonymous
volunteers. It stands as a comparison for genomes
analysed later on.
23 600 20 800 23 100 50900 14100 6700 4300 11
Human Chimp Mouse Rice Fruit fly Yeast E. coli Flu virus That sequence covers the nuclear DNA –
that contained in the cell’s nucleus – over 99
per cent of the total. The mitochondrion, the tiny
organelle that acts as the cell’s energy generator,
Genome size has its own separate genome, with 16 500 base
pairs and just 37 genes. Every cell has hundreds
of copies of this DNA, and many different samples
have been sequenced. For more on mitochondria,
see page 8.
Since the Human Genome Project was
completed, a few named individuals have had
their genomes analysed. The first two were Craig
Venter (the driving force behind the private genome
3.1bn 3.4bn 2.7bn 372m 169m 12m 4.6m 13 500
Human Chimp Mouse Rice Fruit fly Yeast E. coli Flu virus project) in 2007, and DNA pioneer James Watson
the following year. Genome analyses have since
Gene number refers to protein-coding genes. Genome size measured in base pairs. been published for individuals from three distinct
Rice: Japonica subspecies; yeast: Saccharomyces cerevisiae; E.coli: K-12. geographic regions: Korea, China and Nigeria
All figures from Ensembl (www.ensembl.org), except rice (rice.plantbiology.msu.edu), (in the latter case, one of the Yoruba people).
E. coli (Science 1997;277:1453–62) and flu virus (Nature 2005;437:1162–6).
Meanwhile, the 1000 Genomes Project,
launched in 2008, will refine the reference
Now we have whole genomes from a the other. This reveals simple differences sequence with information from a larger number
range of organisms, comparing them and allows us to calculate a percentage of anonymous samples. The project, involving
is a powerful way to investigate what similarity. Such a comparison becomes researchers in the UK, the USA and China, is
makes each creature distinctive. The less meaningful with organisms that are cataloguing variations between individuals
simplest measure is to count genes and less closely related, e.g. humans and that occur in at least 1 per cent of the
check which are there. Do that and you nematode worms, because less of population to pinpoint differences in DNA
find, for example, that the tiger puffer the two genome sequences can be relevant to health and disease.
fish (Fugu rubripes), the first backboned aligned together.
Clockwise from left: A Han Chinese man, a Korean
creature to have its genome sequenced So, even for our closest relative, woman, a Yoruba man from Nigeria. The genome analyses
after humans, has many genes in the crude measure of 98.8 per cent published so far include those for individuals from China,
common with us. On the other hand, similarity conceals important differences. Korea and Nigeria.
around a quarter of human genes have Apart from the precise sequence of
Amar Grover/Photolibrary, Gina Smith/iStockphoto, Ross & Weiss Photography/Photolibrary
no equivalents in the fish, and we have genes there are some differences in
almost ten times as much DNA. the overall set of genes. Also, the time
Animals without backbones, such as when particular genes switch on and
fruit flies and nematode worms, share off during development does not show
very many genes with humans too. up, and this is very different for some
Researchers are still poring over the genes – especially ones that affect
chimpanzee genome, first published the brain. These subtle differences in
in draft in 2005. This confirms that the gene regulation and expression are
chimp is our closest living relative, with a likely to underlie the
genome 98.8 per cent identical to ours. most important
But what does this figure mean? For differences
very closely related organisms, such as between
humans and chimps, we can align most closely related
of one organism’s genome with that of species.
on the slide
Try our interactive slider to explore how similar,
or not, we are to a number of organisms. on the web
www.wellcome.ac.uk/bigpicture/genes
january 2010 5
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lack one working copy, and have partial protection. Why did this
happen? One possibility is that the gene mutation arose when
smallpox was an everyday hazard, and persisted because it
helps to prevent that scourge as well.
Eye of Science/SPL
Top left: Internal structure of an HIV particle, including the RNA-containing core (red).
Bottom left: Smallpox virus particle, including its DNA genome (red).
Right: Smallpox viruses. Smallpox was eradicated in the 1970s by a global vaccination programme,
but is the virus’s once-widespread presence the reason some people are protected from HIV infection today?
nurture
Bernard Maurin/iStockphoto
carry ‘ people
Sun
me, me, me?
Experts
Daily T
e’
elegrap best treatment for each patient. This is important
h
ene
breaks down different drugs, for example. Giving the
warning Depre
ss
red e
there is a choice, should increase effectiveness and
v
Mail
o
Daily reduce adverse reactions.
Express
and
a mutated gene (i.e. one from each
parent).
There are also conditions due to
chromosome larger changes in the chromosomes.
Down’s syndrome, for instance,
disorders is caused by an extra copy of
chromosome 21.
These diseases can be more
Some conditions are caused
complicated than they may seem
by genetic ‘abnormalities’.
at first glance. The protein affected
Some conditions are so tightly tied to in cystic fibrosis can be altered by
DNA mutations that they can be called more than a thousand different
genetic diseases. In a few cases, mutations. Some have almost no
inheriting just one copy of a mutated effect, while others cause severe lung Got the bug?
gene (i.e. a ‘normal’ version from and stomach problems. The extent From protecting orange trees to
one parent and a ‘mutated’ version of symptoms can also be affected by fighting the plague, find out what we
from the other) can lead to disease. other genes, which modify the effect can learn from sequencing
These are known as dominant of the cystic fibrosis gene. People the genomes of all kinds of
conditions, and include with Down’s bacteria and viruses. on the web
Huntington’s disease, syndrome differ
an incurable condition on a whole range No more insulin
Wessex Regional Genetics Centre
that causes gradual of characteristics, Watch a video to find out how the discovery of a
deterioration of the which depend on genetic mutation that caused neonatal diabetes has
brain (for more on this factors including led to a new treatment that’s transformed the lives of
see page 15). how much of patients and their families.
Recessive chromosome 21
conditions, such as is present in three www.wellcome.ac.uk/
cystic fibrosis, are a copies. bigpicture/genes
january 2010 7
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FAST FACT
Kelly Cline/iStockphoto
Understanding
the links
Dr David Furness/Keele University/SPL
or the proteins bound to them, can pass down to the next so the researchers will monitor
carry. These tags, most often generation. the effects on babies born in
simple methyl (CH3) groups, There is good evidence that a different seasons. The study will
affect gene expression – usually mother’s diet during pregnancy look at the exact links between
by preventing transcription. and even just after birth can specific nutrients in the mothers’
Often, the gene affected is affect expression of some of blood samples and DNA
itself one that controls another a baby’s genes – in mice and, methylation in their offspring.
january 2010 9
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Getting
physical FAST
Small genetic changes FACT
The tallest man
can mean big physical
differences. in history was
8' 11" (2.72 m).
We are fascinated by difference, The current
but humans are really world’s shortest
genetically rather similar. The man is 2' 5.37"
latest figures suggest that we (74.61 cm).
are all (identical twins excepted)
99.6 per cent similar.
Many human characteristics
vary continuously – there are
people at many different points
on the scale. Height is a typical
example, and recent analysis
suggests at least 50 different
genes (as well as environment)
affect how tall a person grows. gene is related to pain receptor been linked with increased risk makes a big contribution to
A few characteristics of genes in the brain. However, of breast cancer, so it could hair thickness in eastern Asian
appearance vary more simply. redheads’ reputation for ‘fiery’ turn out to be a medically populations. The gene EDAR
Red hair, for example, goes temperament probably has useful sign. comes in a thick-hair variant,
with having two altered copies more to do with the associations Meanwhile, genomics is which must have appeared after
of a gene known as MC1R, of the colour than with anything uncovering more details of the ancestral Asian and European
which is involved in making in the DNA. small differences in genes that populations divided. The gene
Image Source Pink/Alamy
the pigment melanin. There is Less obvious personal can make a big difference to appears to affect the activity of
some evidence for a number differences, such as having your appearance. For example, a transcription factor – one of
of the other characteristics softer earwax, have been tied the International HapMap the many ways one gene can
often said to be associated to a specific gene. Although Project helped to pin down alter the regulation of another.
with red hair, such as a lower softer earwax is harmless, the a single gene out of the 170 This factor is important in fixing
tolerance for pain. The MC1R same genetic variation has involved in hair growth that the final thickness of hair fibres.
Jeanell Norvell/iStockphoto
derived from them in parts
were a close match, and indicate strongly that of northern England go along
the gradual colonising of the vast space of the with Viking-descended Y
Pacific spread out from what is now Taiwan, chromosomes.
starting around 5000 years ago.
In your
They continue to find new one of the chemicals that
twists in the connections transmits signals across the
between genetics and life gaps (synapses) between nerve
genes? histories. For example, there is
evidence from psychological
cells. One rare form of the MAOA
gene was implicated in the
studies that children’s school origins of antisocial behaviour in
Paul Kline/iStockphoto
Seeing red
Is red hair dying out? Do your bit to save this characteristic in the Wellcome Trust-funded game Ginger Dawn.
january 2010 11
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?
this kind of discrimination, including France, Finland
and Sweden.
In the UK, there is a voluntary, rather than legislative,
“As an insurer I want system in place. In 1999, the Genetics and Insurance
to know if potential customers Committee (GAIC) was established by the government.
have had their genome sequenced This committee oversees insurance companies to
because this could affect the policies ensure that they comply with a code of conduct
I would offer them.” James, 35, published by the Association of British Insurers. This
insurance professional. code includes a moratorium on the use of genetic tests
for insurance purposes. The moratorium lasts until
2014, and a review is planned for 2011.
The GAIC asks insurers to show the clinical,
?
companies have
Do you think it’s right that insurance scientific and actuarial (relating to the statistics of risk)
ome sequences
access to potential customers’ gen relevance of using the results of predictive genetic
r them insurance?
before considering whether to offe
tests in working out insurance policy premiums. At the
moment, the only test insurers are allowed to use is
that for Huntington’s disease, for life insurance policies
over £500 000. Huntington’s is a rare and incurable
“Access to human genetic disease that causes gradual deterioration of
genome sequences, along the brain. It is caused by carrying a faulty copy of the
with anonymised data on the Huntingtin gene.
people’s medical histories and lifestyle More broadly, in the UK, issues surrounding
information, could make a great difference developments in human genetics are overseen by
to our understanding of the genetic the Human Genetics Commission, a government
basis of disease.” Mark, 27, advisory body. It includes a monitoring group for
researcher. genetic discrimination.
?
Would you have your genome seq happen with such regulation in the future?
uenced
?
and allow scientists to have access Will more genetic tests be approved
to the
information for the good of medica for use by insurers?
l science?
?
For what kinds of condition? Do you think that preimplantation Do you think it’s fair to
genetic diagnosis should be used select an embryo in this
to screen embryos in this way?
?
way to save a sibling?
?
What regulation is there?
Prenatal diagnosis has no special legislation apart from that covering termination of
pregnancy (abortion). The decision about whether to have a test during pregnancy is Law out of
made between the woman, her family and the doctors looking after her. order?
Genetic tests during pregnancy are available on the NHS if there is a family history of In 1995, the Police National
a condition, or if they are offered as part of a population screening programme. The UK DNA Database was launched
National Screening Committee decides which conditions are screened for. While some tests in England and Wales to allow
may be available through private clinics, there is no test to screen all of a baby’s genes. the police to store DNA
The Human Fertilisation and Embryology Authority oversees all in vitro fertilisation profiles. Do you think it on the web
procedures and research on embryos in the UK. should be compulsory
Sex selection is only allowed for medical reasons, for instance to avoid having a child for everyone’s DNA to be stored on the
affected by an X-linked disorder such as Duchenne muscular dystrophy. Such diseases, database? Take a look at our exclusive online
in which mutated genes are carried on the X chromosome, more often affect males (who lesson plan and video to explore the issues
have one X chromosome) than females (who have two). around this.
www.wellcome.ac.uk/
Question to discuss: Who should decide what
?
prenatal genetic tests and screening are carried out? bigpicture/genes
january 2010 13
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Real voices
Progress in genetic research affects all of our lives, but what’s it like to face these issues every day in your
work or personal life? We talk to a genetic counsellor, a research scientist and a man who carries the mutation
that causes Huntington’s disease to find out.
www.wellcome.ac.uk/bigpicture/genes
Medicimage/Photolibrary
Although you’ve nearly reached the end of
the magazine, the Big Picture action doesn’t stop there. Go to
www.wellcome.ac.uk/bigpicture/genes to browse exclusive
online articles, videos and other content, which take you further
into the topics covered in this issue.
Find out what researchers can learn by sequencing the
genomes of pathogens, watch our video about how the
discovery of a genetic mutation has led to a treatment that’s
transformed the life of children with neonatal diabetes, and do
Matt Ellison your bit to save ginger-haired people in the game Ginger Dawn.
Also online is our exclusive curriculum-matched lesson plan and
What do you do? video to help you and your students discuss the issues around
the Police National DNA Database.
I’m 21 and a full-time carer for my dad,
who has Huntington’s disease.
MBPHOTO/iStockphoto
positive for the mutation. It was a surreal day, really strange. I was
glad to find out, but at the same time it was terrible news that I
didn’t want to hear.
This is an open access publication and, with the exception of images and illustrations,
the content may unless otherwise stated be reproduced free of charge in any
format or medium, subject to the following conditions: content must be reproduced
Sadly, Matt’s dad died three weeks after this interview. accurately; content must not be used in a misleading context; the Wellcome Trust
Matt and his family wanted this article to be published. must be attributed as the original author and the title of the document specified in
the attribution.
PU-4638/14K/12–2009/PE
january 2010 15
Big genes, genomes
Picture and health
l What is genome sequencing, and
how and why is it done?
l How do our genes affect our personality,
appearance and health?
l What can studying DNA tell us about human history?
l How similar are we to other organisms?
l How should genetic information be used?
Or contact us by telephone,
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