Corn Genetics
Corn Genetics
Corn Genetics
3435–3450, 2015
doi:10.1093/jxb/eru547 Advance Access publication 22 January 2015
REVIEW PAPER
Abstract
Key words: Climate change, cropping systems, DroughtGard, drought tolerance, genetic engineering, marker-assisted
selection, maize, plant breeding.
Abbreviations: AHAS, acetohydroxyacid synthase; FAO, Food and Agriculture Organization of the United Nations; IPPC, Intergovernmental Panel on Climate
Change; QTL, quantitative trait loci; IMI, imidazolinone herbicides; MAS, marker-assisted selection; USDA, US Department of Agriculture.
© The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved.
For permissions, please email: journals.permissions@oup.com
3436 | McKersie
Not only is agriculture likely to be impacted by climate change, development of new products and increased food secu-
but agriculture also contributes significantly to the greenhouse rity. I hope this overview helps both young and established
gas problem by producing emissions that drive climate change. researchers as they organize and communicate their research
Estimates of all human-induced greenhouse gas emissions from programmes to address regional food security issues.
global agriculture vary from 9% (Karl et al., 2009; http://www.
epa.gov/climatechange/ghgemissions/sources/agriculture.html, Options to mitigate the effects on crop
last accessed 2 January 2015) to 30% (Smith and Gregory, 2013)
production
in various regions. In the United USA, agriculture produces 8.6%
of the nation’s total greenhouse gas emissions, including 80% of Society has several options to ensure food security and to
the nitrous oxide emissions and 31% of the methane emissions mitigate the risks to crop production posed by climate change
(Karl et al., 2009). These gases in combination with CO2 are the and by societal changes. However, not all will be effective in
main gases responsible for global climate change. Deforestation the short term, and some may not be practical due to alter-
in the Brazilian Amazon to enable soybean [Glycine max (L.) native demands on limited resources, such as water. The fol-
Merr.)] and cattle production contributes 2–5% of the global lowing is a brief summary of some options, which are not
carbon emissions (Nepstad et al., 2009). mutually exclusive.
In addition, the global agricultural system must provide
about 70% more food for a global population estimated to Reduce CO2 emissions
be 9 billion or more by 2050 (Fischer et al., 2005; Smith and
Gregory, 2013). A further complication is that food prefer- Global political efforts to mitigate the effects of climate
change have focused on reducing greenhouse gas emissions.
predicted by the kinetics of ribulose-1,5-bisphosphate car- done for soybean and winter wheat (Triticum aestivum L.)
boxylase/oxygenase (RuBisCo) due to energy limitations rotation in some regions might become more widespread;
(Crafts-Brandner and Salvucci, 2000). The latest IPCC •• altered planting and/or harvest dates to avoid stressful peri-
(2013) and US Department of Agriculture (USDA) (Hatfield ods, such as drought or flooding;
et al., 2014) reports recognize that negative effects of climate •• water conservation by altered tillage practices, such as
change on crop production may be larger than previously no-till;
anticipated. Therefore, we cannot rely on the existing physiol- •• cropping on marginal land that has poor water or nutrient
ogy and biochemistry of our crops that have evolved in past availability;
low-CO2 environments to prepare them for the future high- •• yield stability in environments experiencing periodic heat or
CO2 environments. drought stress; and
•• increased use of biological or chemical additives to enhance
Increase crop irrigation stress tolerance and improve the overall health of the plant.
An obvious mitigation to reduce the impact of drought is to These changes will require changes in agricultural infrastruc-
increase the use of irrigation for crop production by expand- ture for storage and distribution, farming equipment, crop
ing the water management infrastructure. Where possible, management, and most likely the crop’s physiology, growth,
more irrigation will meet regional needs leading to higher and development, as well as its response to the environment.
crop productivity. However, increased irrigation is unlikely to There is considerable risk in this approach, and concerns
be a global solution. A report by the Food and Agriculture have been expressed as to whether any of these changes in
crop production will be successful (Sayer and Cassman,
•• create new cultivars that will have consistently higher yield agronomy will develop new cultivars and new crop manage-
in these new crop production systems; and ment practices to stabilize or increase yield. These will be cou-
•• use these new cultivars to implement the new food produc- pled with infrastructure improvements to transportation and
tion system. irrigation systems to increase food supply for a growing pop-
ulation (Karl et al., 2009; Nelson et al., 2009; Muller et al.,
In other words, as many others have proposed previously 2011; Turral et al., 2011). This opinion has been re-enforced
(Beddington, 2010; Piesse and Thirtle, 2010; Zeigler and most recently by the US Climate Change Science Program in
Mohanty, 2010; McAllister et al., 2012; Pingali, 2012), their draft report (Hatfield et al., 2014): ‘Agriculture has been
I believe that we need a Second Green Revolution. The fol- able to adapt to recent changes in climate; however, increased
lowing are some suggestions on how this might be achieved. innovation will be needed to ensure the rate of adaptation
of agriculture and the associated socioeconomic system can
Planning the Second Green Revolution keep pace with climate change over the next 25 years.’ In other
words, society (on the advice of many agricultural experts)
Agronomists around the world are working with farmers and expects that a Second Green Revolution is simply a matter
achieving considerable success in developing new crop produc- of allocating financial and human resources to the problem.
tion practices for a changing climate, a recent example being This may be one reason why society has fewer concerns about
reported by Kirkegaard et al. (2014) in Australia. At the same the future impacts of climate change on food security than is
time, plant breeders are using genetics and biotechnology to warranted.
develop crops that have greater yield stability in our current The initial strategy employed in the first Green Revolution
production systems (for example, in maize: Castiglioni et al.,
3. Identify genes that regulate those physiological traits. that might be used in the future to increase yield is beyond
4. Create genetic diversity for those physiological traits using the scope of this article. The reader is referred to the follow-
the identified genes. ing articles on this topic (Fischer et al., 2014; Passioura and
5. Breed new regionally adapted cultivars to incorporate Angus, 2010) as well as a special issue of Field Crops Research
those physiological traits into agronomically acceptable on yield gap analysis (van Ittersum and Cassman, 2013). The
cultivars. following sections discuss only a few of many potential new
6. Implement the envisioned changes in crop management crop production practices to illustrate the concept of envi-
using the newly developed cultivars. sioning in step 1. Whether any represent significant new
global opportunities or whether any require new crop culti-
The restrictions are that any changes in crop production
vars has yet to be established.
must not negatively impact the environment or contribute to
further climate change by increasing global greenhouse gas
production. These changes must provide a greater overall Innovation example 1: double cropping and intercropping
yield stability across diverse environments from year to year Double cropping of soybean after harvesting wheat is cur-
and from location to location. So the targets of the Second rently a common production system in the mid-southern
Green Revolution differ from the first because increased USA (Kyei-Boahen and Zhang, 2006). Cropping systems
nitrogen fertilization and increased irrigation are unlikely to based on a single crop waste large proportions of key inputs
be sustainable practices in the future climate. on an annual basis, including radiation and water. Growing
more crops per year theoretically improves resource capture
and productivity. As an example, Caviglia et al. (2004) com-
Step 1: envision changes in crop management system
pared wheat–soybean single and double-cropping systems
To begin, we need to envision a new crop management system and confirmed that double cropping improved resource
with the potential to be a breakthrough that leads to an incre- capture and efficiency, but the impact was much greater for
mental yield increase in the predicted future environment. water than for radiation. They attributed the difference to
This step is essential in the research plan to enable commu- storable (water) versus non-storable resources (radiation)
nication to stakeholders and funding agencies and to provide and proposed that further research in their region empha-
focus, context, and mandate for the interdisciplinary teams. size improvements in radiation capture. Many studies have
One way to categorize and prioritize alternatives is to dis- been conducted on this cropping system in the USA and
sect yield into components (Fig. 3) that might be simpler have shown that tillage practices and the availability of
targets to change by modifying crop management. One or adequate soil moisture when planting soybean are among
more of the following opportunities might be a target but the the more critical factors to consider http://oilseeds.okstate.
selection must be tailored for specific regional environments. edu/production-information/soybean/PSS-2137%20(dou-
A comprehensive review of the crop production practices ble%20crop%20soybean).pdf, last accessed 2 January 2015;
3440 | McKersie
for their fungicidal properties but also for their effects on biomass production. This not only reduces evaporative losses
stress tolerance and yield. Strobilurins are effective against but also inhibits the growth of weeds (Lemerle et al., 2001).
several different plant-pathogenic fungi and give high levels Other innovations involving better rooting patterns and a
of protection against a wide range of crop diseases. (For healthier root system can be postulated to further improve
more details on these fungicides, see the following reviews: this cropping system. Small amounts of subsoil water can
Bartlett et al., 2002; Balba, 2007; Zhao et al., 2010). In enhance grain yield (Kirkegaard et al., 2007). Consequently,
addition, the strobilurin fungicides have been reported in plants that have deep roots are expected to have greater yield
numerous studies to increase seed yield in the absence of but only if there is water available in the subsoil, if there is
detectable levels of fungal infection, prompting the com- no hardpan from soil compaction, and if there is no subsoil
mercial application of strobilurins to improve tolerance of salinity. Thus, the potential for this target is very regional.
drought and other stress resulting in reduced variable yield
(Grossmann and Retzlaff, 1997; Grossmann et al., 1999; Step 2: identify traits that enable changes in crop
Jabs et al., 2002; Nason et al., 2007; Nelson and Meinhardt, management
2011; Ishikawa et al., 2012). A growing number of produc-
ers have responded by incorporating fungicide treatments Once the new crop management system is envisioned, it is
into their management programmes in attempts to increase necessary to determine which (if any) physiological trait(s)
yield (http://agproducts.basf.us/products/headline-fungi- of the crop should be changed by plant biotechnology and/
cide.html, last accessed 2 January 2015). Like biological or plant breeding to enable the new crop management sys-
additives, the use of chemical additives to reduce variable tem. Several recent articles have proposed various targets for
plant breeding for knowledge-based stress avoidance and tol- law that is often used to this day in extension publications
erance mechanisms has not progressed well, even though there that provide fertilizer recommendations. The barrel has staves
is genetic variation for these traits in germplasm collections of unequal length, with each stave representing a nutrient.
(Richards et al., 2010; Araus et al., 2012; Araus and Cairns, The shortest stave limits the capacity of the barrel, indicat-
2014). Salekdeh et al. (2009) proposed a set of rigorous cri- ing that this nutrient should be supplemented to the crop to
teria for phenotyping in both controlled and field situations, increase the capacity of the barrel. Once that stave is length-
and they proposed several phenotypes associated with differ- ened (i.e. nutrient supplied), another stave becomes the short-
ent yield components under drought. They noted that drought est and limits the capacity of the barrel.
environments are diverse, and several biotic and abiotic stresses This concept is implicit in crop production research. For
affect yield in these environments. Thus, they did not propose example, in the first Green Revolution, once the dwarf wheat
the use of a single environment to impose a drought stress cultivars were supplied with more nitrogen, water became
or a single set of phenotypes to quantify drought tolerance, the next limiting factor. In a more recent example, Passioura
but suggested that yield, water use, water-use efficiency, and (2006) noted that if cereal grain yield per water used is mark-
harvest index be included as reference phenotypes in future edly less than 20 kg ha−1 mm−1, it is likely that other stresses
studies. Some commercial breeding programmes advocate the such as weeds, diseases, poor nutrition, or inhospitable soil
use of managed-drought-environment technologies (Cooper are limiting yield. He noted that any benefit from improved
et al., 2014), whereas others have concluded that most traits water management can be achieved only if these constraints
of importance in dry environments are selected best in favour- are eliminated first.
able moist environments (Richards et al., 2010). Perhaps this The concept of Liebig’s law seems especially useful when
3. Does the same stave limit ‘drought tolerance’ under mild, 600 distinct types of transgenic plants. In another example,
transient water deprivation as following a long period of Yang et al. (2010) summarized the regulatory genes that have
water deprivation? been identified in Arabidopsis and reported positive results
4. Does the same stave limit ‘drought tolerance’ regardless of from eight transcription factor gene families, two post-tran-
the plant’s stage of development? scription gene families, and nine osmoprotectant metabolite
5. Does the same stave limit ‘drought tolerance’ in all tissues? classes. This is not a positive outcome from our science.
Concerns have also been expressed about the quality of
The literature indicates that the answer to all of the above this gene discovery research because overexpression of very
questions is a clear ‘No’. Our original research strategy was many single transgenes seems to slightly increase drought tol-
to characterize drought tolerance traits in model plant sys- erance in transgenic plants under extreme conditions. Lawlor
tems grown in artificial environments and extrapolate these (2013) has expressed concern about the quality of these reports
results to crops. We now know that we would make differ- because they neglect the physiology of plant water relations,
ent conclusions based on how we define drought tolerance, use unspecific definitions and criteria, and use inadequate
what we measure, how we measure it, and in which species we methods to assess drought tolerance. He noted that in these
measure it. Since our inductive logic has not been validated reports there is a trend in which transgenic plants exhibit a
by the empirical data, we need to change our research strat- form of ‘drought resistance’ that he calls ‘delayed stress onset’.
egy. It now appears that research in a model plant species, In experiments that deprive plants of water to demonstrate
such as Arabidopsis, is exceedingly useful to define potential drought tolerance, the transgenic plants develop stress symp-
fundamental biological processes that impact drought toler- toms later than in wild-type plants. These ‘drought-tolerant’
the trait into regionally adapted germplasm than it is to use engineered trait than a trait from exotic germplasm. A single
either genetic engineering approach (Collard and Mackill, marker may be sufficient for the engineered trait, but if the
2008). Thus, the first task is to screen the available germ- trait originated in exotic germplasm or is quantitative (multi-
plasm for the target trait, and based on these results decide genic), several markers may be required to track the required
whether to use MAS or an engineering approach (Fig. 2). To genes, and to remove linked genes, which adds complexity.
use MAS, the trait must meet the requirements listed in step Unlike the previously engineered traits of glyphosate resist-
2: have genetic variability, be genetically correlated with yield, ance or root worm resistance that introduced novel protein
have higher heritability than yield, and be quantifiable in a functions into the crops, changes to yield and stress-related
high-throughput manner. These are not simple requirements. traits will most likely require the modification of existing
Both genetic engineering techniques, mutagenesis and molecular networks within the plant that involve many inter-
transformation, require detailed genetic, physiological, and acting genes. It is anticipated that there is allelic variance for
biochemical knowledge about the target trait to efficiently these networks within the crops, and that these ‘native’ alleles
engineer the trait. In some cases, success has been achieved may interact differently with the engineered gene. This creates
without this knowledge. Instead a high-throughput screen is the potential to optimize the trait using breeding methodology
required to identify an individual with the trait from within a in commercial germplasm by combining favourable alleles. It
large population, which is not usually feasible for most agro- also raises a potential commercial challenge if there is a sig-
nomic traits (herbicide resistance being the obvious excep- nificant (genotype×transgene)×environment interaction, as
tion). The more complete our understanding and knowledge reported by Habben et al. (2014) for the downregulated ACC
about the target trait, the more likely the project will be synthases in maize. This approach is highly analogous to the
Success in developing drought tolerance Richards et al., 2010). QTL for drought-tolerance traits and
in maize their molecular markers have been identified in different
crops, including maize (Cooper et al., 2014). With the devel-
The following are some examples of projects that have suc- opment of comprehensive molecular linkage maps, MAS pro-
cessfully released more drought-tolerant maize hybrids in cedures stack these desirable traits to achieve improvements
recent years. Almost all approaches have had some degree in drought tolerance. The accuracy and preciseness in QTL
of success. Traditional plant breeding has made considerable identification, the significant genetic×environment interac-
progress without applying knowledge of the physiological tion, the large number of genes encoding yield, and the use
basis of yield. MAS using markers correlated with drought of wrong mapping populations have hindered the use of QTL
tolerance has been used successfully, again without specific to select for growth and yield under water-limited conditions
knowledge of the genes and their physiological effects. On the (Ashraf, 2010).
other hand, both empirical screening and knowledge-based Nonetheless, the development of drought tolerance in
approaches using genes with known functions and physiolog- maize in North America has recently progressed with the
ical effects have been successfully used to genetically engineer release of maize hybrids from Syngenta’s Agrisure Artesian
transgenic maize with greater drought tolerance. The lack of (http://www3.syngenta.com/country/us/en/agriculture/
high-throughput screens for a trait as complex and diverse as seeds/agrisure-traits/Pages/agrisure-artesian-4011.aspx, last
drought tolerance has limited any application of mutagenesis accessed 2 January 2015) and Pioneer’s AQUAmax (https://
to drought tolerance, but its potential for other commercial www.pioneer.com/home/site/us/products/corn/seed-traits-
targets has been demonstrated. technologies-corn/optimum-aquamax-hybrids/, last accessed
following exposure to cold, heat, and water deficits as dem- 2016/2017 in South Africa, but due to the lack of regulatory
onstrated by greater plant height. Constitutive overexpression approval, release in other parts of Africa will be delayed.
in maize gave a positive improvement in yield under man- Note that this technology transfer is only feasible for trans-
aged water environments and dryland conditions that was genic traits. The transfer of markers and drought-tolerant
predominately the result of increased kernel numbers, not germplasm from breeding programmes, such as Agrisure
kernel weight. The positive effects of transgene expression Artesian and AQUAmax, is unlikely to be successful because
were observed in late vegetative/flowering and grain-filling of the genetic complexity and genotype×environment inter-
periods. Contrary to the effects of many other transgenes that actions involved.
claim effects on drought tolerance, expression of CspB did
not result in detrimental effects on plant size, development, Success example 5: ethylene biosynthesis
or productivity under well-watered conditions. Consequently,
the yield improvements observed under water limiting condi- DuPont Pioneer has used a knowledge-based approach to
tions were not associated with a yield penalty in high-yielding develop more drought-tolerant maize hybrids. Habben et al.
environments. An application for deregulation of a transgenic (2014) observed that maize uses the ethylene signalling system
maize event was made to APHIS in 2011 (http://www.aphis. to abort kernels as part of its survival strategy during severe
usda.gov/brs/aphisdocs/09_05501p_fea.pdf, last accessed drought stress. They hypothesized that the survival response
2 January 2015) and development of commercial maize in maize is too conservative to maintain high yield and is
‘DroughtGard’ hybrids was initiated (http://www.monsanto. probably unnecessary in modern agricultural environments.
com/SiteCollectionDocuments/whistlestop-drought-posters. They proposed that modulation of the response by downreg-
Tolerance to IMI herbicides was introduced through diversity already exists within the crop’s germplasm, conven-
mutation breeding and commercially released by BASF tional plant breeding, complimented by MAS, is the preferred
and its partners as Clearfield crops that were developed route to a commercial product. If diversity does not exist,
using conventional breeding methods beginning in 1992. In these traits become the targets for change using genetic tools.
the Clearfield approach, variant AHAS alleles were created Next, if an engineering approach is selected, the genes
through mutagenesis and selection to confer IMI tolerance in that regulate these physiological traits must be characterized
maize, wheat, rice, oilseed rape (Brassica napus L.) and sun- and understood. This may be achieved initially by empiri-
flower (Helianthus annuus L.) (Tan et al., 2005, 2006). The cal screening or by knowledge-based approaches, apparently
allele encoding IMI tolerance was then introgressed into com- with equal success to date. Although the basic biological
mercial germplasm. Similar approaches have subsequently principles may be developed in model systems, the hypothesis
been used in other breeding programmes (Oldach et al., 2008; that the traits will enable the envisioned crop management
Lee et al., 2011; Rustgi et al., 2014). changes must be validated in crops under field conditions in
Transformation was used as an alternative strategy to cre- the target region.
ate IMI tolerance in crops. Many patents and publications Genetic diversity for these physiological traits is then cre-
describe the production of herbicide-resistant plants by trans- ated using the identified genetic engineering technology and
forming plants with mutant alleles that encode altered AHAS knowledge of the trait. Either mutagenesis or transformation
enzymes resistant to inhibition by the IMI and sulfonylurea may be used depending on the crop, market, and suitability of
herbicides (Anderson and Hinnerd, 1988; Lee et al., 1988; screening methods. Once the hypothesis is validated in field
Wiersma et al., 1989; Bedbrook et al., 1991; Sala et al., 2008). trials, the biological changes to the crop must be understood