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 Chapter 12

Biofloc Technology (BFT):

A Review for Aquaculture Application
and Animal Food Industry

Maurício Emerenciano, Gabriela Gaxiola and Gerard Cuzon

Additional information is available at the end of the chapter

http://dx.doi.org/10.5772/53902

1. Introduction
The aquaculture industry is growing fast at a rate of ~9% per year since the 1970s [1].
However, this industry has come under scrutiny for contribution to environmental
degradation and pollution. As a result, requirement for more ecologically sound
management and culture practices remains fully necessary. Moreover, the expansion of
aquaculture is also restricted due to land costs and by its strong dependence on fishmeal
and fish oil [2,3]. Such ingredients are one of the prime constituents of feed for commercial
aquaculture [4]. Feed costs represent at least 50% of the total aquaculture production costs,
which is predominantly due to the cost of protein component in commercial diets [5].
Interest in closed aquaculture systems is increasing, mostly due to biosecurity,
environmental and marketing advantages over conventional extensive and semi-intensive
systems [6]. When water is reused, some risks such as pathogen introduction, escapement of
exotic species and discharging of waste water (pollution) are reduced and even eliminated.
Furthermore, because of high productivity and reduced water use, marine species can be
raised at inland locations [6]. A classic example is the currently expansion of marine shrimp
farms at inland location in USA, which allows local farmers market fresh never frozen
shrimp in metropolitan locations with good profitability.
The environmental friendly aquaculture system called “Biofloc Technology (BFT)” is
considered as an efficient alternative system since nutrients could be continuously recycled
and reused. The sustainable approach of such system is based on growth of microorganism
in the culture medium, benefited by the minimum or zero water exchange. These
microorganisms (biofloc) has two major roles: (i) maintenance of water quality, by the
uptake of nitrogen compounds generating “in situ” microbial protein; and (ii) nutrition,
increasing culture feasibility by reducing feed conversion ratio and a decrease of feed costs.

© 2013 Emerenciano et al., licensee InTech. This is an open access chapter distributed under the terms of
the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits
unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
302 Biomass Now – Cultivation and Utilization

As a closed system, BFT has primordial advantage of minimizing the release of water into
rivers, lakes and estuaries containing escaped animals, nutrients, organic matter and
pathogens. Also, surrounding areas are benefitted by the “vertically growth” in terms of
productivity, preventing coastal or inland area destruction, induced eutrophication and
natural resources losses. Drained water from ponds and tanks often contains relatively high
concentrations of nitrogen and phosphorous, limiting nutrients that induce algae growth,
which may cause severe eutrophication and further anaerobic conditions in natural water
bodies. In BFT, minimum water discharge and reuse of water prevent environment
degradation and convert such system in a real “environmentally friendly system” with a
“green” approach. Minimum water exchange maintain the heat and fluctuation of
temperature is prevented [7], allowing growth of tropical species in cold areas.

Currently, BFT has received alternate appellation such as ZEAH or Zero Exchange
Autotrophic Heterotrophic System [8-10], active-sludge or suspended bacterial-based
system [11], single-cell protein production system [12], suspended-growth systems [13] or
microbial floc systems [14,15]. However, researches are trying to keep the term “BFT or
Biofloc Technology” in order to establish a key reference, mainly after the book release
“Biofloc Technology – A Practical Guide Book” in 2009 [16]. Moreover, BFT has been focus of
intensive research in nutrition field as a protein source in compounded feeds. Such source is
produced in a form of “biofloc meal”, mainly in bioreactors [17]. In addition, the fast spread
and the large number of BFT farms worldwide induced significant research effort of
processes involved in BFT production systems [14].

The objective of this chapter is to review the application of Biofloc Technology (BFT) in
aquaculture; and describes the utilization of biofloc biomass (also described in this chapter
as “biofloc meal”) as an ingredient for compounded feeds. An addition goal is to help
students, researchers and industry to clarify the basic aspects of such technology, aiming to
encourage further research.

2. History of BFT
According to [18], BFT was first developed in early 1970s at Ifremer-COP (French Research
Institute for Exploitation of the Sea, Oceanic Center of Pacific) with different penaeid species
including Penaeus monodon, Fenneropenaeus merguiensis, Litopenaeus vannamei and L.
stylirostris [19,20]. Such culture system was compared with an “external rumen”, but now
applied for shrimp [21]. At the same period, Ralston Purina developed a system based on
nitrifying bacteria while keeping shrimp in total darkness. In connection with Aquacop,
such system was applied to L. stylirostris and L. vannamei both in Crystal River (USA) and
Tahiti, leding considerations on benefits of biofloc for shrimp culture [22]. In 1980, a French
scientific program ‘Ecotron’ was initiated by Ifremer to better understand such system.
Several studies enabled a comprehensive approach of BFT and explained interrelationships
between different compartments such as water and bacteria, as well as shrimp nutritional
physiology. Also in 1980s and beginning of 1990s, Israel and USA (Waddell Mariculture
Center) started R&D in BFT with tilapia and white shrimp L. vannamei, respectively, in
 Biofloc Technology (BFT): A Review for Aquaculture Application and Animal Food Industry 303

which water limitation, environmental concerns and land costs were the main causative
agents that promoted such research (Fig. 1).

Figure 1. Biofloc technology at Ifremer, Tahiti (A), Sopomer farm, Tahiti (B), Waddell Mariculture
Center (C) and Israel (D) (Photos A and B: Gerard Cuzon; C: courtesy of Wilson Wasielesky; and D:
courtesy of Yoram Avnimelech)

Regarding to commercial application of BFT, in 1988 Sopomer farm in Tahiti (French

Polynesia) using 1000m2 concrete tanks and limited water exchange achieved a world record
in production (20–25 ton/ha/year with two crops) [22, 23]. On the other hand, Belize
Aquaculture farm or “BAL” (located at Belize, Central America), probably the most famous
case of BFT commercial application in the world, produced around 11-26 ton/ha/cycle using
1.6 ha lined grow-out ponds. Much of know-how of running worldwide commercial scale
BFT shrimp ponds is derived from BAL experience. In small-scale BFT greenhouse-based
farms, Marvesta farm (located at Maryland, USA), probably is the well-known successful
indoor BFT shrimp farm in USA, can produce around 45 ton of fresh never frozen shrimp
per year using ~570 m3 indoor race-ways [24]. Nowadays, BFT have being successfully
expanded in large-scale shrimp farming in Asia, Latin and Central America, as well as in
small-scale greenhouses in USA, South Korea, Brazil, Italy, China and others (Fig 2). In
addition, many research centers and universities are intensifying R&D in BFT, mostly
applied to key fields such as grow-out management, nutrition, BFT applied to reproduction,
microbial ecology, biotechnology and economics.
304 Biomass Now – Cultivation and Utilization

Figure 2. Biofloc technology commercial-scale at BAL (A) and Malaysia (B), and pilot-scale in Mexico
(C and D) (Photos A, B and D: Maurício Emerenciano; and C: courtesy of Manuel Valenzuela)

3. The role of microorganisms

The particulate organic matter and other organisms in the microbial food web have been
proposed as potential food sources for aquatic animals [25]. In BFT, microorganisms present
a key role in nutrition of cultured animals. The macroaggregates (biofloc) is a rich protein-
lipid natural source available “in situ” 24 hours per day [14]. In the water column occurs a
complex interaction between organic matter, physical substrate and large range of
microorganisms such as phytoplankton, free and attached bacteria, aggregates of particulate
organic matter and grazers, such as rotifers, ciliates and flagellates protozoa and copepods
[26] (Fig 3). This natural productivity play an important role recycling nutrients and
maintaining the water quality [27,28].

The consumption of biofloc by shrimp or fish has demonstrated innumerous benefits such
as improvement of growth rate [10], decrease of FCR and associated costs in feed [9].
Growth enhancement has been attributed to both bacterial and algae nutritional
components, which up to 30% of conventional feeding ration can be lowered due to biofloc
consumption in shrimp [29]. In reference [9] was reported that more than 29% of daily food
consumed for L. vannamei could be biofloc. In tilapia, in [30] was estimated that feed
utilization is higher in BFT at a rate of 20% less than conventional water-exchange systems.
 Biofloc Technology (BFT): A Review for Aquaculture Application and Animal Food Industry 305

Also, consumption of macroaggregates can increase nitrogen retention from added feed by
7-13% [31, 32]. In this context, BFT has driven opportunities to use alternative diets. Low
protein feeds and feeds with alternative protein sources different than marine-based
products (i.e. fishmeal, squid meal, etc) have been successfully applied in BFT [28, 33-35],
leading “green” market opportunities.

Figure 3. Grazers often observed in BFT such as flagellates protozoa (A), ciliates protozoa (B),
nematodes (C) and copepods (D) (10x magnification) (Source: Maurício Emerenciano)

Regarding to maintenance of water quality, control of bacterial community over autotrophic

microorganisms is achieved using a high carbon to nitrogen ratio (C:N) [30], which
nitrogenous by-products can be easily taken up by heterotrophic bacteria [36]. High carbon
to nitrogen ratio is required to guarantee optimum heterotrophic bacteria growth [14, 37],
using this energy for maintenance (respiration, feeding, movement, digestion, etc), but also
for growth and to produce new cells. High carbon concentration in water could supersede
the carbon assimilatory capacity of algae, contributing to bacteria growth. Aerobic
microorganisms are efficient in converting feed to new cell material (40-60% of conversion
efficiency), rather than higher organisms that spend about 10-15% to rise in weight [16].
Bacteria and other microorganisms act as very efficient “biochemical systems” to degrade
and metabolize organic residues [36]. In other words, they recycle very efficiently nutrients
in a form of organic and inorganic matter (un-consumed and non-digested feed, metabolic
residues and carbon sources applied as fertilizers) into new microbial cells.
306 Biomass Now – Cultivation and Utilization

The carbon sources applied in BFT are often by-products derived from human and/or
animal food industry, preferentially local available. Cheap sources of carbohydrates such as
molasses, glycerol and plant meals (i.e. wheat, corn, rice, tapioca, etc) will be applied before
fry/post-larvae stocking and during grow-out phase, aiming to maintain a high C:N ratio
(~15-20:1) and to control N compounds peaks. Also, a mix of plant meals can be pelletized
(“green-pellet”) and applied into ponds [38]; or low protein diets containing high C:N ratio
can also be carried out [16,33]. The carbon source serves as a substrate for operating BFT
systems and production of microbial protein cells [36]. There are many considerations for its
selection such as costs, local availability, biodegradability and efficiency of bacteria
assimilation. In Table 1 is summarized some studies with different species and carbon
source applied in BFT system.

Carbon source Culture specie Reference

Acetate Macrobrachium rosenbergii [39]
Cassava meal Penaeus monodon [40]
Cellulose Tilapia [12]
Corn flour Hybrid bass and hybrid tilapia [41, 42]
Dextrose Litopenaeus vannamei [43]
Glycerol and
M. rosenbergii [39]
Glycerol+Bacillus
Glucose M. rosenbergii [39]
Molasses L. vannamei and P. monodon [9, 29, 44]
Sorghum meal Tilapia [12]
Tapioca L. vannamei and M. rosenbergii [31, 45]
Wheat flour Tilapia (O. niloticus) [33]
Farfantepenaeus brasiensis, F. paulensis and F. [37, 46,
Wheat bran + molasses
duorarum 47]
Tilapia O. niloticus x O. aureus and tilapia
Starch [7, 14]
(Mozambique)
Table 1. Different carbon sources applied on BFT system (Source: adapted from [36])

Not all species are candidates to BFT. Some characteristics seems to be necessary to achieve
a better growth performance such as resistance to high density, tolerance to intermediate
levels of dissolved oxygen (~3-6 mg/L), settling solids in water (~10 with a maximum of 15
mL/L of “biofloc volume”, measured in Imhoff cones) [38] and N-compounds, presence of
filtering apparatus (i.e. tilapia), omnivorous habits and/or digestive system adaptable to
better assimilate the microbial particles.
 Biofloc Technology (BFT): A Review for Aquaculture Application and Animal Food Industry 307

4. Applications in aquaculture
4.1. Nursery and grow-out
Nursery phase is defined as an intermediate step between hatchery-reared early postlarvae
and grow-out phase [48]. Such phase presents several benefits such as optimization of farm
land, increase in survival and enhanced growth performance in grow-out ponds [49-51].
BFT has been applied successfully in nursery phase in different shrimp species such as L.
vannamei [44, 48], P. monodon [51], F. paulensis [15, 46], F. brasiliensis [37, 52] and F. setiferus
[34]. The primary advantage observed is related to a better nutrition by continuous
consumption of biofloc, which might positively influence grow-out performance a posteriori
[53], but was not always the case [54]. In addition, optimization of farm facilities provided
by the high stocking densities in BFT nursery phase seems to be an important advantage to
achieve profitability in small farms, mainly in cold regions or when farmers are operating
indoor facilities.

In [46] was observed that presence of bioflocs resulted in increases of 50% in weight and
almost 80% in final biomass in F. paulensis early postlarval stage when compared to
conventional clear-water system. This trend was observed even when postlarvae were not
fed with a commercial feed (biofloc without commercial feed). In L. vannamei nursery in BFT
conditions, references [48] and [55] reported survival rates ranging from 55.9% to 100% and
97% and 100%, respectively. In [51] was demonstrated that the addition of substrates in BFT
systems increased growth and further enhanced production, while also contributing to more
favorable water quality conditions. According to the same study, growth and survival was not
affected by stocking density (2500 vs 5000 PL/m2), therefore greater production outputs were
achieved at the higher density. Furthermore, in [37] was found that F. brasiliensis postlarvae
grow similarly with or without pelletized feed in biofloc conditions during 30-d of nursery
phase, which was 40% more than conventional clear-water continuous exchange system.
In grow-out, BFT has been also shown nutritional and zootechnical benefits. In [9] was
estimated that more than 29% of the daily food intake of L. vannamei consisted of microbial
flocs, decreasing FCR and reducing costs in feed. The reference [10] showed that juveniles of
L. vannamei fed with 35% CP pelletized feed grew significantly better in biofloc conditions as
compared to clear-water conditions. In [28] was showed that controlling the concentration of
particles in super-intensive shrimp culture systems can significantly improve shrimp
production and water quality. Also, the same authors demonstrated that environmentally
friendly plant-based diet can produce results comparable to a fish-based feed in BFT
conditions. In [56] was evaluated the stocking density in a 120d of L. vannamei BFT culture,
reporting consistent survival of 92, 81 and 75% with 150, 300 and 450 shrimp/m2,
respectively. Moreover, the study [57] performed in a heterotrophic-based condition
detected no significant difference in FCR when feeding L. vannamei 30% and 45% CP diets
and 39% and 43% CP diets, respectively. With these results in mind, floc biomass might
provide a complete source of cellular nutrition as well as various bioactive compounds even
at high density. It is not known exactly how microbial flocs enhance growth. Growth might
be enhanced by continuous consumption of “native protein”, protein source without
308 Biomass Now – Cultivation and Utilization

previous treatment [18], which could possess a “growth factor” similar to the one
investigated in squid [58]. Is well known that protein, peptides and aminoacids participate
fully in synthesis of new membranes, somatic growth and immune function and biofloc can
potentially provide such ingredients.

For fish and other species, BFT also has been demonstrated encouraged results. Intensive
BFT Oreochromis niloticus tilapia culture could produce an equivalent of 155 ton/ha/crop [11].
Besides high yields, decrease of FCR and decreased of protein content in diets have also
been observed. In [30] was estimated that feed utilization by tilapia is higher in BFT with a
ration 20% less than conventional water exchange system. Studying the effect of BFT in
juveniles tilapia, the reference [33] showed no difference in fish growth/production between
35% and 24% CP fed tanks under BFT, but both were higher than clear-water control
without biofloc with 35% CP. Moreover, in [7] was investigated the effectiveness of BFT for
maintaining good water quality in over-wintering ponds for tilapia. The authors concluded
that BFT emerge as an alternative to overcome over-wintering problems, particularly mass
mortality of fish due to low temperatures. In the study [14] was observed that biofloc
consumed by fish (tilapia) may represent a very significant feed source, constituting about
50% of the regular feed ration of fish (assuming daily feeding of 2% body weight).
In M. rosenbergii larviculture was evaluated the effect of different carbon sources in a BFT
culture conditions [39]. The authors found that using glucose or a combination of glycerol
plus Bacillus as a carbon source in bioreactors led to higher biofloc protein content, higher n-
6 fatty acids, which resulted in improved survival rates. In a study with a Brazilian endemic
tropical fish species tambaqui (Colossoma macropomum) was observed that BFT did not
improve fish growth/production as compared to clear-water conditions [59], although some
water quality problems in such study remained unsolved (i.e. turbidity and nitrite). The
authors showed no differences in 44% CP fed tanks under BFT and clear-water conditions,
as well as 28% CP BFT. Certainly further research is needed to clarify the effect of BFT in
Colossoma macropomum. On the other hand, Piaractus brachypomus or pirapitinga seems to be
a candidate species to BFT [60].

4.2. Breeding
The BFT has been successfully applied for grow-out, but little is known about biofloc
benefits on breeding. For example, in the shrimp industry with the global spread of viruses,
the use of closed-life cycle broodstock appeared as a priority to guarantee biosecurity,
avoiding vertical transmissions. Moreover, such industry places a considerable interest on
penaeid breeding program, often performed in closed facilities, controlling the production
plan through successive generations. These programs were frequently associated with large
animals, disease resistance as well as the enhancement of reproductive performance. However,
nutritional problems remain unresolved [61] and alternatives should be evaluated.

As an alternative for continuous in situ nutrition during the whole life-cycle, breeders raised
in BFT limited or zero water exchange system are nutritional benefited by the natural
productivity (biofloc) available 24 hours per day. Biofloc in a form of rich-lipid-protein
 Biofloc Technology (BFT): A Review for Aquaculture Application and Animal Food Industry 309

source could be utilized for first stages of broodstock’s gonads formation and ovary
development. Furthermore, production of broodstock in BFT could be located in small areas
close to hatchery facilities, preventing spread of diseases caused by shrimp transportation.

In conventional systems breeders used to be produced in large ponds at low density.

However, risks associate with accumulation of organic matter, cyanobacteria blooms and
fluctuations of some water quality parameters (such as temperature, DO, pH and N-
compounds) remains high and could affect the shrimp health in outdoor facilities. Once the
system is stable (sufficient particulate microbiota biomass measured in Imhoff cones), BFT
provides stabilized parameters of water quality when performed in indoor facilities such as
greenhouses, guaranteeing shrimp health.
According to studies performed with the blue shrimp L. stylirostris [18] and the pink shrimp
F. duorarum broodstock [62], BFT could enhance spawning performance as compared to the
conventional pond and tank-reared system, respectively (i.e. high number of eggs per
spawn and high spawning activity; Fig 4). Such superior performance might be caused by
better control of water quality parameters and continuous availability of food (biofloc) in a
form of fatty acids protected against oxidation, vitamins, phospholipids and highly diverse
“native protein”, rather than conventional systems which “young” breeders are often
limited to pelletized feed. These nutrients are required to early gonad formation in young
breeders and subsequent ovary development. The continuous availability of nutrients could
promote high nutrient storage in hepatopancreas, transferred to hemolymph and directed to
ovary, resulting in a better sexual tissue formation and reproduction activity [18].

Regarding to shrimp broodstock management, one of the most important management

procedures is related to control of solids and stocking density. High levels of solids
negatively affect shrimp health, particularly with shrimp weight higher than 15g [47].
Settling solids or “biofloc volume” should be managed below than 15mL/L (measured in
Imhoff cones) [38, 47]. Excess of particulate organic matter covered breeder’s gills and could
limit oxygen exchange, might resulting in mortalities.

Stocking density has to be carefully managed, mainly in sub-adult/adult phase (i.e. >15g).
High density or high biomass will lead to an increase in organic matter, TSS levels and N-
compounds in tanks or in ponds [63]. Moreover, physical body damages are prevented at
low density, improving breeder’s health. For review, a suggested stocking density is well
described in [64].

For fish, no literature is available regarding BFT and application in breeders. The same trend
observed in penaeid shrimp might be observed in fish. The continuous consumption of
diverse microbiota (biofloc) should improve nutrients transfer, gonad formation and
reproduction performance in fish. Lipid is a well-known nutrient that plays a key role in
reproduction of aquatic species. In tilapia, breeders fed with crude palm oil based-feed (n-6
fatty acid rich source) presented high concentration of acid arachidonic or “ARA” (C20:4 n-
6) in gonads, eggs and larvae of tilapia as compared to fish oil or linseed oil-based feeds [65].
As a result, better reproductive performance was observed in terms of higher total number
of eggs per fish, larger gonad sizes, shorter latency period, inter spawning interval and
310 Biomass Now – Cultivation and Utilization

higher spawning frequency. ARA is an essential fatty acid crucial in reproduction, acting as
hormone precursor [66]. In the study [33] was found high ARA content in biofloc harvested
in tilapia culture freshwater tanks. Bioflocs in freshwater bioreactors contained high ARA
content using glucose and glycerol as a carbon source [67]. These findings suggested that
biofloc (according its nutritional profile, for review see section 5.0) might positively
influence the reproductive performance in fish, supplying nutrients for gonad development,
possibly also enhancing larval quality a posteriori. BFT in tilapia broodstock could be an
effective method to increase tilapia fry production and further research is need in this field.

Figure 4. Spawning performance of F. duorarum (tank-reared vs biofloc) and L. stylirostris (pond-reared

vs biofloc) performed in 45 and 30 days after ablation, respectively. Mean weights in parenthesis (more
details in [18] and [62]).
 Biofloc Technology (BFT): A Review for Aquaculture Application and Animal Food Industry 311

4.3. The “natural probiotic” effect of biofloc

Biofloc can be a novel strategy for disease management in contrast to conventional
approaches such as antibiotic, antifungal, probiotic and prebiotic application. The “natural
probiotic” effect in BFT could act internally and/or externally against, i.e., to Vibrio sp. and
ectoparasites, respectively. This effect is promoted by large groups of microorganisms, but
mainly bacteria that is considered the first trophic level in the system.

Internally, bacteria and its synthesized compounds could act similar to organic acids and
might be effective bio-control agents, also given beneficial host’s microbial balance in the
gut [68]. The regular addition of carbon in the water is known to select for
polyhydroxyalkanoates (PHA) accumulating bacteria and other groups of bacteria that
synthesize PHA granules. The microbial storage product poly-ß-hydroxybutyrate (PHB), a
biodegradable polymer belonging to the polyesters class, is only one compound of a whole
family of polyhydroxyalkanoates. PHB is produced by a widely variety of microorganisms
such as Bacillus sp., Alcaligenes sp., Pseudomonas sp. from soluble organic carbon and is also
involved in bacterial carbon metabolism and energy storage [68]. This polymer could
comprise ~80% of the bacteria’s cell dry matter and up to 16% on biofloc dry weight [69].
Different carbon sources or structures of carbon substrate will result in varying types of
PHA [69].

Such granules are synthesized under conditions of physiological and nutrient stress, i.e.,
when an essential nutrient like nitrogen is limited in the presence of an excess carbon source
[68]. When these polymers are degraded in the gut, they could have antibacterial activity
similar to short chain fatty acids (SCFAs) or organic acids. The breakdown of PHA inside
the gastrointestinal tract can be carried out via chemical and enzymatic hydrolysis [70].

Chemical hydrolysis can be carried out by treating the polymers with, i.e., NaOH, in which
could significantly accelerate its digestibility [70]. On the other hand, enzyme hydrolysis is
generally carried out by extracellular depolymerases activities which are widely distributed
among bacteria and fungi, acting as a preventive or curative protector against Vibrio sp.
infections and stimulate growth and survival of shrimp and fish larvae [69].

The working mechanism of PHAs with respect to their antibacterial activity is not well
understood [68]. As they could act similarly to SCFA, some studies speculated the working
mechanism by (i) reduction of pH, in which antibacterial activity increases with decreasing
pH value [71]; (ii) inhibiting the growth of pathogenic bacteria by interference on cell
membrane structure and membrane permeability, as well as instability of internal protons
balance, lowering ATP and depletion of cellular energy [72]; and (iii) down-regulate
virulence factor expression and positively influence the gut health of animals [73]. Further
research is need to maximizing PHA content in bioflocs applied, i.e., for fish/shrimp feed,
characterizing and analyzing their bio-control efficacy in different host-microbe systems
[68].

Externally, the working mechanism of biofloc microorganisms against pathogens seems to

be by competition of space, substrate and nutrients. Some essentials nutrients such as
312 Biomass Now – Cultivation and Utilization

nitrogen are required by both groups (i.e. heterotrophic bacteria vs Vibrio sp.) limiting their
growth. Inhibiting compounds excreted by BFT microorganisms, light intensity and type of
carbon source also could reduce pathogens growth. Unfortunately, limited information is
available on this field. In a study with fish fingerlings [74] was reported that tilapia (initial
weight 0.98 ± 0.1g) reared under BFT limited water-exchange condition (FLOC) presented
less ectoparasites in gills and ectoderm’s mucous as compared to conventional water-
exchange system (CW) after 60 days (Fig 5).

Figure 5. Number of total ectoparasites in gills and ectoderm’s mucous of fry tilapia reared under BFT
limited water-exchange condition (FLOC) and conventional water-exchange system (CW) after 60 days
(more details in [74])

4.4. Aquaponics
Aquaponics is a sustainable food production system that combines a traditional aquaculture
with hydroponics in a symbiotic environment. The water is efficiently recirculated and
reused for maximum benefits through natural biological filtration and recirculation. The
waste that is excreted by aquatic species or uneaten feed is naturally converted into nitrate
and other beneficial nutrients in the water. Those nutrients are then absorbed by the
vegetables and fruits in a “natural fertilization way”.

Aquaculture species including fish, crayfish, freshwater prawns or shrimp are usually
reared in tanks and the water directed into separated race-ways of hydroponics vegetables.
A worldwide well-known aquaponics system was successfully developed by University of
Virgin Islands (Fig 6). Typical plants raised in aquaponics include lettuce, chard, tomato,
fruits such as passion fruit, strawberry, water melon, etc.; and a large variety of spices. Size
of aquaculture tanks varies according aquatic species/vegetables demand and usual shapes
includes round, square or rectangular tanks.
 Biofloc Technology (BFT): A Review for Aquaculture Application and Animal Food Industry 313

(Source: UVI website www.uvi.edu )

Figure 6. Aquaponics system at University of Virgin Islands

Nowadays, BFT have been successfully applied in aquaponics. The presence of rich-biota
(microorganisms of biofloc) and a variety of nutrients such as micro and macronutrients
originated from un-eaten or non-digested feed seems to contribute in plant nutrition. A well-
known example of biofloc and aquaponics interaction was also developed by UVI. However,
the application of BFT in aquaponics needs particular attention, mainly on management of
solid levels in water (for review, see [28]). High concentration of solids may cause excessive
adhesion of microorganism on plants roots (biofilm), causing its damage, lowering
oxygenation and poor growth. Filtering and settling devices are often needed (Fig 7).

(Source: UVI website www.uvi.edu )

Figure 7. Scheme of worldwide well-known UVI Aquaponics System

314 Biomass Now – Cultivation and Utilization

5. Microbial biomass application in animal food industry

The cost of diets in several animal cultures is predominantly due to the cost of protein
component [75]. In the case of aquaculture, its massive expansion in the last decades has
begun to face some important limitations like increasing prices of fishmeal, a raw material
prime component of aquaculture diets. However, pressure caused in natural stocks (over-
fishing) has depleted fishmeal production and, as a consequence, continuous increase in
prices has been observed [76]. Moreover, growth of aquafeed industry (driven by an
increase in fish/shrimp demand as the global population continues to growth), the
competition with other animal cultures (such as swine and poultry) and differences in
fishmeal quality also collaborated with increase in prices of fishmeal. The quality attributed
to fishmeal includes high palatability, high content of digestible protein, highly unsaturated
fatty acids (HUFA) and minerals.

In this context, alternatives should be evaluated opposing this non-optimism scenario.

Aquaculture industry needs to investigate alternative source of proteins to replace less
sustainable ones. Candidates of protein sources might have good digestibility, palatability,
energy content, low ash content and present a well-balanced essential amino acids profile
(EAA) [77].
In the past years, BFT has been emerged not only as promising alternative to grow-out
system, but also as a method to obtain protein for compounds diets originated from its
diverse microbiota. Collected in tanks/ponds [46, 62] or produced in bioreactors [17, 39, 67]
biofloc (Fig 8) is a raw material to produce “biofloc meal”. In bioreactors, biofloc production
can clean up effluent waters from aquaculture facilities, converting dissolved nutrients into
single-cell protein [78]. Usually, two types of bioreactors have been employed: sequencing
batch reactors (SBRs) and membrane batch reactors (MBRs), both controlling ammonia,
nitrite and suspended solids with great efficacy (for review of bioreactors and its employ,
see Kuhn et al 2012). Moreover, excess of solids removed from culture tanks or ponds and/or
concentrated into solid removal devices [28] could also be a recyclable source of biofloc for
biofloc meal production. This sustainable approach of protein source is getting more
attention in the aquaculture industry. The microbial particles can provide important
nutrients such as protein [33, 46], lipids [10, 37], aminoacids [80] and fatty acids [33, 67, 81].

Biofloc meal (also called “single-celled” protein), added to compounded feed is currently
focus of intensive research in nutrition fields [17, 78]. However, to produce this protein
ingredient some processes are required such as drying, milling and storage. In this context,
nutritional characteristics could be affected (by i.e. temperature during drying), which the
“native” properties could be altered.

Nutritional composition of biofloc differs according to environmental condition, carbon

source applied, TSS level, salinity, stocking density, light intensity, phytoplankton and
bacteria communities and ratio, etc. Regarding to age of bioflocs, in “young” biofloc
heterotrophic bacteria is mainly presented as compared to “old” biofloc dominated by fungi
[79]. In biofloc particles, protein, lipid and ash content could vary substantially (12 to 49, 0.5
to 12.5 and 13 to 46%, respectively; Table 2). The same trend occurs with fatty acids (FA)
 Biofloc Technology (BFT): A Review for Aquaculture Application and Animal Food Industry 315

profile. Essential FA such as linoleic acid (C18:2 n-6 or LA), linolenic acid (C18:3 n-3 or
ALA), arachidonic acid (C20:4 n-6 or ARA), eicosapentanoic acid (C20:5 n-3 or EPA) and
docosahexaenoic acid (C22:6 n-3 or DHA), as well as sum of n-3 and sum of n-6 differ
considerably between 1.5 to 28.2, 0.04 to 3.3, 0.06 to 3.55, 0.05 to 0.5, 0.05 to 0.77, 0.4 to 4.4
and 2.0 to 27.0% of total FA. Type of carbon source, freshwater or marine water and
production of biofloc biomass (in bioreactors or culture tanks) definitely influence the FA
profile (Table 3 and 4). Vitamin and amino acids profile from biofloc produced in large-scale
commercial bioreactors [82] in given in Table 5.

Microorganisms

Substrate

Figure 8. Biofloc particle (10x magnification) (Source: [54])

Information is still scarce about how microorganisms profile and its nutritional composition
could impact animal growth. However, is already known that microorganisms in biofloc
might partially replace protein content in shrimp diets, although were not always the case
[10, 88]. Recent studies determined how reducing the protein content of diet would affect
growth performance of shrimp reared in biofloc conditions. In the study [15] was found that
at least 10% of protein content in pelletized feed can be reduced when F. paulensis postlarvae
are raised in BFT conditions. In [89] was observed that shrimp fed with less than 25% crude
protein under biofloc conditions performed similarly to shrimp raised under regular clear-
water intensive culture with a 37%-protein diet. The biofloc system also delivered more
consistent survival rates, especially at higher density. A low-protein biofloc meal-based
pellet (25% CP) was evaluated as a replacement of conventional high-protein fishmeal diet
(40% CP) for L. vannamei in a relatively low temperature (25oC) under biofloc conditions
[35]. The results showed that is possible to replace 1/3 part of a conventional diet by
alternative low-protein biofloc meal pellet without interfering survival and shrimp
performance.
316 Biomass Now – Cultivation and Utilization

Crude protein (%) Carbohydrates (%) Lipids (%) Crude fiber (%) Ash (%) Reference
43.0 - 12.5 - 26.5 [27]
31.2 - 2.6 - 28.2 [83]
22.0 -
12.0 - 42.0 - 2.0 - 8.0 - [84]
46.0
31.1 23.6 0.5 - 44.8 [10]
18.3 -
26.0 - 41.9 - 1.2 - 2.3 - [80]
40.7
30.4 - 1.9 12.4* 38.9 [85]
49.0 36.4 1.13 12.6 13.4 [17]
38.8 25.3 <0.1 16.2 24.7 [78]
22.1 -
28.8 - 43.1 - 2.1 - 3.6 8.7 - 10.4 [86]
42.9
30.4 29.1 0.5 0.8 39.2 [37]
18.2-29.3 22.8-29.9 0.4-0.7 1.5-3.5 43.7-51.8 [47]
18.4-26.3 20.2-35.7 0.3-0.7 2.1-3.4 34.5-41.5 [87]
28.0-30.4 18.1-22.7 0.5-0.6 3.1-3.2 35.8-39.6 [62]
*Lignin+cellulose

Table 2. Proximate analysis of biofloc particles in different studies.

Also, recent studies have been demonstrated that fishmeal in shrimp diets can be partially
replaced by other protein sources under biofloc conditions or by biofloc meal. In [90] was
evaluated two fishmeal replacement levels (40 and 100% of replacement) by other
ingredients (soyabean meal and viscera meals) in diets for Litopenaeus vannamei reared in a
biofloc system. The authors observed that fishmeal can be replaced in a level of 40.0%
without interfering on growth performance and water quality. On the other hand,
incorporating treated solids (microbial flocs) generated from tilapia effluent into shrimp
feed, [91] demonstrated that shrimp performance was significantly increased as compared
to untreated solids (settling basins of tilapia culture units). In [92] a trial performed in clear-
water conditions detected that fishmeal can be completely replaced with soy protein
concentrate and biofloc meal (obtained from super-intensive shrimp farm effluent) in 38%
CP diets without adverse effects on L. vannamei performance. Moreover, [17] observed that
biofloc produced in SBRs bioreactors using tilapia effluent and sugar as a growth media
could offer an alternative protein source to shrimp feeds. Microbial floc-based diets
significantly outperformed control fishmeal-based diets in terms of weight gain per week
with no differences in survival.

Regarding to biofloc meal production, one bottleneck seems to be the large amount of wet
biofloc biomass required to produce 1kg of dry biofloc meal. Estimative indicates that
biofloc plug in 1L settling cones contained only 1.4% of dry matter [14]. The reference [17]
indicated that 1 kg of microbial floc could be produced per 1.49 kg of sucrose in bioreactors.
Certainly more research is needed on this field. On the other hand, other applications of
 Biofloc Technology (BFT): A Review for Aquaculture Application and Animal Food Industry 317

biofloc meal in animal industry should be evaluated, mainly considering its nutritional
profile and relatively low costs as compared to other protein sources (i.e. fishmeal) [17]. In
aquaculture, biofloc meal could be included into broodstock pelletized feed, prior or after
eyestalk ablation. Further research is encouraged in this field.

Fatty Acid % of total fatty acid

C14:0 0.10 0.60 0.80 0.45 1.43 0.69 0.61 0.43
C15:0 0.15 0.25 0.25 0.30 0.31 0.31 0.17 0.26
C16:0 2.2 17.0 26.0 15.0 6.06 8.01 6.34 8.86
C16:1 4.0 3.7 3.0 5.0 6.61 2.61 1.61 1.54
C17:0 0.05 0.4 0.5 0.2 0.20 0.23 0.14 0.68
C18:0 0.5 4.0 7.1 6.0 2.37 4.82 3.94 6.27
C18:1 n-7 1.5 3.0 1.9 2.7 3.96 1.72 2.71 4.19
C18:1 n-9 1.8 19.0 30.0 18.0 3.34 7.26 8.12 12.05
C18:2 n-6 (LA) 5.0 19.0 28.2 11.0 1.91 17.24 11.95 21.87
C18:3 n-3 (ALA) 0.04 0.5 0.45 2.0 0.23 0.99 0.20 0.21
C20:0 - 0.10 0.20 0.20 0.06 0.34 0.33 0.49
C20:1 n-9 0.05 0.10 0.15 0.10 0.25 0.20 0.06 0.02
C20:3 n-6 0.15 0.10 0.06 0.07 0.55 0.36 0.15 0.04
C20:4 n-6 (ARA) 0.7 0.3 0.15 0.20 0.77 0.87 0.17 0.06
C20:5 n-3 (EPA) 0.10 0.11 0.05 0.25 0.15 0.15 0.19 0.12
C22:6 n-3 (DHA) 0.05 - 0.07 0.05 0.18 0.06 0.18 0.10
∑ Saturated 22.08 22.99 35.35 22.45 10.76 14.85 11.53 16.99
∑
8.16 26.22 35.45 27.15 16.51 14.21 12.5 17.8
Monounsaturated
∑ n-3 0.4 0.6 0.7 0.65 1.04 2.02 0.60 0.43
∑ n-6 7.0 20.0 27.0 12.0 4.03 19.03 12.27 21.97
Type of water freshwater freshwater freshwater freshwater freshwater freshwater marine marine
Carbon source (Glycerol+ Glucose
Acetate Glycerol Glucose Glycerol Glucose Glycerol
Bacillus)
Collection bioreactors bioreactors bioreactors bioreactors bioreactors bioreactors bioreactors bioreactors

Reference [39] [67]

Table 3. Fatty acid profile of biofloc (produced in experimental bioreactors) using different carbon
source in marine water and freshwater
318 Biomass Now – Cultivation and Utilization

Fatty Acid % of total fatty acid

C14:0 2.02-2.48 13.8-16.1 5.4-6.2

C15:0 0.70-0.77 1.1-1.5 1.1-1.3

C16:0 17.88-19.10 45.4-53.5 48.7-49.3

C16:1 7.15-7.74 9.9-15.3 16.5-21.6

C17:0 - 0.7 0.9-1.0

C18:0 6.24-7.27 3.4-3.5 3.7-4.5

C18:1 n-7 11.05-11.28 - -

C18:1 n-9 8.51-10.08 8.8-9.2 7.7-10.8

C18:2 n-6 9 (LA) 15.38-16.68 1.5-2.5 2.2-2.6

C18:3 n-3 (ALA) 0.65-0.73 2.0-2.3 2.2-3.3

C20:0 0.87-1.44 0.2-0.4 0.4

C20:1 n-9 0.74-0.80 0.3-0.4 0.5

C20:3 n-6 0.40-0.46 0.2 0.2

C20:4 n-6 (ARA) 3.11-3.55 0.3-0.4 0.3-0.4

C20:5 n-3 (EPA) 0.39-0.46 0.3-0.5 0.5

C22:6 n-3 (DHA) 0.74-0.77 0.2-0.4 0.3-0.4

∑ Saturated 30.2-34.92 67.6-73.0 61.5-61.9

∑ Monounsaturated 28.10-29-38 19.7-25.0 28.3-30.5

∑ n-3 1.38-1.91 2.8-3.4 3.2-4.4

∑ n-6 23.5-25.81 2.0-3.0 2.7-3.1

Type of water freshwater marine marine

Carbon source Wheat flour molasses molasses

Collection Tilapia tanks shrimp tanks shrimp tanks

Reference [33] [87] [62]

Table 4. Fatty acid profile of biofloc (collected in tanks) using different carbon source in marine water
and freshwater
 Biofloc Technology (BFT): A Review for Aquaculture Application and Animal Food Industry 319

Amino Acids As Fed (%)

Alanine 3.82
Arginine 3.60
Aspartic acid 6.36
Glutamic acid 8.04
Glycine 2.81
Histidine 1.46
Isoleucine 3.38
Leucine 5.06
Lysine 4.34
Methionine 1.41
Cysteine 0.55
Phenylalanine 3.29
Proline 2.77
Serine 2.82
Taurine 0.25
Threonine 3.11
Tryptophan 0.98
Tyrosine 2.83
Valine 3.52
Total 60.4

Vitamins
Niacin 83.3 mg/kg
Thiamine B1 7.7 mg/kg
Riboflavin 39.0 mg/kg
Vitamin B12 12.0 mg/kg
Vitamin E 29.8 IU/kg
Table 5. Example of vitamin and amino acids profile from biofloc produced in large-scale commercial
bioreactors [82].

6. Conclusions and perspectives of BFT

Biosecurity is a priority in aquaculture industry. For example, in shrimp farming,
considerable impact of disease outbreaks during the past two decades greatly affected the
operational management of shrimp farms worldwide [10]. Infected PLs and incoming water
seem to be the main pathway for pathogen introduction. This scenario forced farmers to
look for more biosecure culture practices to minimize the risk associated with exposure to
pathogens [2]. Biofloc technology brings an obvious advantage of minimizing consumption
and release of water, recycling in situ nutrients and organic matter. Furthermore, pathogens
introduction is reduced, improving the farm biosecurity.
320 Biomass Now – Cultivation and Utilization

Biofloc technology will enable aquaculture grow towards an environmental friendly

approach. Consumption of microorganisms in BFT reduces FCR and consequently costs in
feed. Also, microbial community is able to rapidly utilize dissolved nitrogen leached from
shrimp faeces and uneaten food and convert it into microbial protein. These qualities make
minimal-exchange BFT system an alternative to extensive aquaculture. Microorganisms in
biofloc might partially replace protein content in diets or decrease its dependence of
fishmeal.

Related to biofloc meal and its perspectives, the study [17] detected initial estimates of cost
for producing a metric ton of biofloc meal is approximately $400 to $1000. The same authors
cited that global soymeal market varied approximately from $375 to $550/metric ton from
January 2008 through May 2009. During the same time period, fishmeal varied
approximately from $1000 to $1225, suggesting feasibility on replacement of either soybean
and/or fish meal by biofloc meal. Moreover, generated from a process that cleans
aquaculture effluents [17, 39] biofloc meal production avoids discharge of waste water and
excessive damage to natural habitats [4]. This ingredient seems to be free of deleterious
levels of mycotoxins, antinutritional factors and other constituents that limit its use in
aquafeeds [79]. Large-scale production of biofloc meal for use in aquaculture could result in
environmental benefits to marine and coastal ecosystems, as the need for wild fish as an
aquafeed ingredient is reduced [79, 92].

Sensorial quality of BFT products is also an important issue. BFT may bring higher profit if
fresh non-frozen shrimp/fish is sold to near-by market, mainly at inland locations. These
advantages certainly should be more explored and niche markets achieved, contributing to
social sustainability.

Author details
Maurício Emerenciano
Posgrado en Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México (UNAM),
Unidad Multidisciplinaria de Docencia e Investigación (UMDI), UNAM, Sisal, Yucatán, Mexico
Santa Catarina State University, Centro de Educação Superior da Região Sul (CERES), Laguna,
Santa Catarina, Brazil

Gabriela Gaxiola
UMDI, Facultad de Ciencias, UNAM, Sisal, Yucatán, México

Gerard Cuzon
Ifremer (Institut Français de Recherche pour l'Exploitation de la Mer) Taravao, Tahiti, French
Polynesia

Acknowledgement
The authors would like to thank CONCYTEY (Consejo de Ciencia y Tecnología del Estado
de Yucatán), Coordenação de Aperfeiçoamento de Pessoal de Nível Superior-CAPES,
 Biofloc Technology (BFT): A Review for Aquaculture Application and Animal Food Industry 321

Brazilian Ministry of Education (PhD grant number 4814061 provided to the primary
author) and Consejo Nacional de Ciencia y Tecnología-CONACyT, México (grant 60824) for
research support. The authors also would like to thank Wilson Wasielesky, Yoram
Avnimelech and Manuel Valenzuela for photos courtesy and Miguel Arévalo, Maite
Mascaró, Elsa Noreña, Santiago Capella, Adriana Paredes, Gabriela Palomino, Korynthia
Aguiar, Moisés Cab, Nancy Aranda Cirerol, Concepción Burgos, Manuel Valenzuela and all
staff of Programa Camarón-UMDI for their contribution towards researches performed at
UMDI-UNAM cited in this chapter.

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