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    Sumaiya Nazeen-CV2019

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    youare52
    This document is a resume for Sumaiya Nazeen, a Ph.D. candidate in computer science and artificial intelligence at MIT. She received her B.Sc. in computer science from Bangladesh University of Engineering and Technology, where she graduated first in her class, and received her S.M. in computer science from MIT with a 5.0 GPA. Her research focuses on computational methods for functional interpretation of diverse omics data to study microbiome, complex diseases, and personalized medicine. She has published several journal articles and conference papers and received honors including an International Fulbright Fellowship.

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    Sumaiya Nazeen-CV2019

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    This document is a resume for Sumaiya Nazeen, a Ph.D. candidate in computer science and artificial intelligence at MIT. She received her B.Sc. in computer science from Bangladesh University of Engineering and Technology, where she graduated first in her class, and received her S.M. in computer science from MIT with a 5.0 GPA. Her research focuses on computational methods for functional interpretation of diverse omics data to study microbiome, complex diseases, and personalized medicine. She has published several journal articles and conference papers and received honors including an International Fulbright Fellowship.

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    This document is a resume for Sumaiya Nazeen, a Ph.D. candidate in computer science and artificial intelligence at MIT. She received her B.Sc. in computer science from Bangladesh University of Engineering and Technology, where she graduated first in her class, and received her S.M. in computer science from MIT with a 5.0 GPA. Her research focuses on computational methods for functional interpretation of diverse omics data to study microbiome, complex diseases, and personalized medicine. She has published several journal articles and conference papers and received honors including an International Fulbright Fellowship.

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
    Download as pdf or txt
    88 views3 pages

    Sumaiya Nazeen-CV2019

    Uploaded by

    youare52
    This document is a resume for Sumaiya Nazeen, a Ph.D. candidate in computer science and artificial intelligence at MIT. She received her B.Sc. in computer science from Bangladesh University of Engineering and Technology, where she graduated first in her class, and received her S.M. in computer science from MIT with a 5.0 GPA. Her research focuses on computational methods for functional interpretation of diverse omics data to study microbiome, complex diseases, and personalized medicine. She has published several journal articles and conference papers and received honors including an International Fulbright Fellowship.

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
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    of 3

    Sumaiya

    Nazeen
    77 Massachusetts Avenue, 32-G570
    Ph.D. Candidate in EECS Cambridge, MA 02139
    Computer Science and Artificial Intelligence Laboratory (CSAIL) Email: nazeen@mit.edu, Ph: +1 (857) 206-2195
    Massachusetts Institute of Technology (MIT) Website: http://nazeen.csail.mit.edu/

    Education

    Ph.D. in Computer Science Fall 2014 – Present


    Massachusetts Institute of Technology (MIT) CGPA: 5.00/5.00
    Computation and Biology Group
    Department of Electrical Engineering & Computer Science (EECS)
    Advisor: Professor Bonnie Berger, Ph.D.
    Thesis: Computational Methods for Functional Interpretation of
    Diverse Omics Data
    Minor: Corporate Finance (MIT Sloan School of Management)

    S.M. in Computer Science 2012 – 2014
    Massachusetts Institute of Technology (MIT) CGPA: 5.00/5.00
    Computation and Biology Group
    Department of Electrical Engineering & Computer Science (EECS)
    Advisor: Professor Bonnie Berger, Ph.D.
    Thesis: Integrative analysis of heterogeneous genomic datasets to
    discover genetic etiology of autism spectrum disorders

    B.Sc. in Computer Science & Engineering 2011
    Bangladesh University of Engineering & Technology (BUET) CGPA: 4.00/4.00
    Algorithm Engineering, Design & Analysis Group (AlEDA) Rank: 1/138 (CSE)
    Department of Computer Science & Engineering (CSE)
    Advisor: Professor M Sohel Rahman, Ph.D.

    Current Research Interests

    • Role of Microbiome in Human Health and Diseases


    • Integrative Omics Analyses for Complex Human Diseases
    • Personalized Medical Omics

    Areas of interest: Machine Learning, Combinatorial Optimization

    Selected Honors and Awards

    • Ludwig Center Molecular Oncology Graduate Fellowship, 2015-16


    Koch Institute of Integrative Cancer Research, MIT, USA
    • International Fulbright Science & Technology Fellowship, 2012-15
    Bureau of Educational and Cultural Affairs (ECA), U.S. Department of State
    • Prime Minister’s Gold Medal, 2011 (for outstanding results in the Bachelor’s level)
    University Grants Commission, Bangladesh
    • Chancellor’s Award, BUET, 2011 (for securing highest CGPA in the University)
    Bangladesh University of Engineering & Technology (BUET), Bangladesh
    • Departmental Gold Medal, 2011 (highest CGPA in the Department of CSE, BUET)
    Bangladesh University of Engineering & Technology (BUET), Bangladesh
    • Dean's List award in every year of undergraduate studies at BUET, 2006-10
    Bangladesh University of Engineering & Technology (BUET), Bangladesh
    • University Merit Scholarship in all semesters at BUET, 2006-10
    Bangladesh University of Engineering & Technology (BUET), Bangladesh

    Publications

    JOURNAL PUBLICATIONS:

    [1] Nazeen, S., Yu, Y. W., and Berger, B. Carnelian uncovers hidden functional patterns across diverse study
    populations from whole metagenome sequencing reads. (under review at Genome Biology)

    [2] Nazeen, S.†, Palmer, N.P.†, Berger, B., and Kohane, I.S. Integrative analysis of genetic datasets reveals a shared
    innate immune component in autism spectrum disorder and its co-morbidities. Genome Biology, 17:1(2016) 228
    († Co-first authors)

    [3] Moosa, T.M., Nazeen, S. †, Rahman, M.S., and Reaz, R. †, Inferring Strings from Cover Arrays, Discrete
    Mathematics, Algorithms and Applications, 5.02 (2013) 1360005 (Author names in alphabetical order)

    [4] Nazeen, S., Rahman, M.S., and Reaz, R. †, Indeterminate String Inference Algorithms, Journal of Discrete
    Algorithms, 10 (2012) 23-34

    CONFERENCE PROCEEDINGS/TALKS:

    [5] Nazeen, S. and Berger, B. Carnelian: alignment-free functional binning and abundance estimation of
    metagenomic reads. ECCB 2018. Applications Track. Athens, Greece (2018)

    [6] Moosa, T.M., Nazeen, S., Rahman, M.S., Reaz, R., Linear Time Inference of Strings from Cover Arrays using a
    Binary Alphabet. Rahman and Nakano (eds.) WALCOM 2012. LNCS, vol. 7157, pp. 160-172. Springer, Heidelberg
    (2012)

    POSTERS AND ABSTRACT SUBMISSIONS:

    [8] Nazeen, S., Singh, R., Berger, B.A., LAPRAS: An integrative model incorporating heterogeneous datasets to
    discover genetic etiology of autism spectrum disorder, ISMB/ECCB, Dublin, Ireland (2015) (one of the 36 posters
    selected for oral presentation among ~600 accepted posters)

    [9] Nazeen, S., Berger, B.A., Integrative Analysis of Multiple Gene Expression Studies Reveals Genes and Pathways
    involved in Alteration of Steroidogenesis in Polycystic Ovary Syndrome (PCOS), ECCB, Strasbourg, France (2014)

    INVITED TALKS:

    [1] Nazeen, S. Uncovering hidden functional patterns across diverse study populations from whole metagenome
    sequencing reads with Carnelian. ACM-BCB: Workshop on Microbiomics, Metagenomics, and
    Metabolomics, September 2019 (forthcoming)

    [2] Nazeen, S. Carnelian: enhanced functional profiling for whole genome metagenomics. Frontiers in Microbiota
    Interactions Symposium, Harvard Medical School, 2018
    [3] Keynote Speech at the Workshop on Women Empowerment through ICT: Higher Studies, Research and
    Career, Road to Grad Schools Abroad: Guidelines & Advices, Bangladesh University of Engineering &
    Technology, Dhaka, Bangladesh, June 2014

    Research and Teaching Experience

    • Research Assistant at MIT Computation and Biology Group under supervision of Prof. Bonnie Berger,
    September 2013 – Present
    • Remote Associate Researcher, Broad Institute of MIT and Harvard, Cambridge, MA, USA, January 2013 –
    Present
    • Teaching Assistant to Prof. Bonnie Berger, 18.418: Topics in Computational Molecular Biology, Spring
    2017
    • Research Assistant (Rotation) at MIT Computation and Biology, Computational Genomics, and
    Computational Biology Groups under supervision of Prof. Bonnie Berger, Prof. Manolis Kellis, and Prof.
    David K. Gifford, September 2012 – August 2013
    • Lecturer at Department of Computer Science and Engineering, Bangladesh University of Engineering
    and Technology, March 2011 – August 2012
    • Associate Sub-project Manager, Enhancement of Graduate Studies Facilities for the Department of CSE,
    BUET, Higher Education Quality Enhancement Project, AIF Round-II (A project aided by World Bank), 2012

    Membership and Social Affiliations

    • Member, International Society for Computational Biology, February 2014 – Present


    • Member, Association for Computing Machinery, 2018 – Present
    • EECS Departmental Representative, Graduate Women at MIT (GWAMIT), September 2013 – June 2019
    • Advisor, Bangladeshi Students Association at MIT (MIT BSA), June 2016 – June 2019
    • President, Bangladeshi Students Association at MIT (MIT BSA), June 2015 – May 2016
    o was awarded “Engineering Community Award” by Office of Multicultural Programs at MIT
    • Member, International Students Council at MIT (Representative for Bangladesh), June 2015 – May 2016
    • Co-President, Graduate Women’s Group in EECS, MIT (GW6), January 2015 – December 2015
    • Treasurer, Bangladeshi Students Association at MIT (MIT BSA), June 2013 – May 2015
    o was awarded “Organization of the Year Award” by Office of Multicultural Programs at MIT
    • Vice President, Bangladeshi Students Association at MIT (MIT BSA), September 2012 – May 2013
    o was awarded “Excellence in Programming Award” by Office of Multicultural Programs at MIT
    • Member, Holy Cross College Alumni Association

    Extracurricular Activities

    • 1st Runner Up, EECS GSA Logo Design Competition, MIT (2014)
    • Volunteer for MIT GSC Orientation Events (2013)
    • Instructor for Special Sunday School at Parkside Elementary School, Atlanta, GA (2013)
    • 1st Runner Up, Women's Singles Badminton Tournament, CSE Day'07 organized by Department of CSE,
    BUET, 2007
    • 1st Runners Up, Science Fair, 27th National Science & ICT Week, Tejgaon - Ramna Thana Zone, Dhaka
    Division, 2004
    • 2nd Runners Up, Quiz Competition, Josephite Festival organized by St. Joseph High School & College, 2004

    References available upon request.

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