MCAT - Biology
MCAT - Biology
MCAT - Biology
Concept 1 Biomolecules have unique properties that determine how they contribute to the structure and function of cells and how they
participate in the processes necessary to maintain life.
Structure and function of proteins and their constituent amino acids
1. Amino Acids
Amino Acids – organic molecules containing a 1) carboxyl group 2) amino groups;
attached to a alpha carbon (chiral centre), Hydrogen atom and a side chain R
(determines the properties of the amino acids and its function)
Optically active (rotates the plane of plan polarized light, except for Glycine)
20 alpha-amino acids encoded by the human genetic code – proteinogenic amino
acids
Chiral (except for Glycine)
Naturally occurring proteins are L amino acids
In aqueous solution, amino acid and carboxylic groups will ionize to give zwitterionic
form (dipolar ion) [carboxyl group loses H+, while NH2 gains H+]
c) Hydrolysis – breaking a peptide bond with an addition of hydrogen to one AA’s amine group and a hydroxyl to the other AA’s carbonyl
carbon
Peptide bonds are strong requires a strong base (or biological enzyme) to hydrolyze
2. Protein Structure
Protein consists of one or more polypeptides folded and coiled into specific conformations
Protein Primary Secondary Tertiary Quaternary
Structure
Sequence of amino acids Formation of alpha helices Folding of the protein to a Shape produced by
and beta pleated sheets compact 3-dimensional combination of polypeptides
Encodes information shape of a polypeptide
required for folding
Stabilized Covalent (amide/peptide) Hydrogen bonds (H with O) 5 forces Same as tertiary but between
by bonds between amino acids between groups along the 1/ Covalent Disulfide Bond two or more polypeptides
peptide backbone between cysteines
2/ Hydrogen Bonds
MCAT – Biological and Biochemical Foundations of Living Systems
H is attached a N atom (hence3/ Electrostatic Interactions
having strong affinity for O)(between Acidic and Basic)
4/ Van der Waals
5/ Hydrophobic Packing –
hydrophobic and hydrophilic
interactions between the R
groups of amino acid
Alpha helix – coil like structure held together by hydrogen bonding between every forth amino acid; rolls clockwise around a central axis
Beta Sheets – polypeptide chain connected by H bonds between parts of the 2 parallel polypeptide backbones
Can be parallel or anti-parallel
Reinforced by H-bonds between carbonyl oxygen of one amino acid and the hydrogen on the amino acid of another
role of proline, cystine, hydrophobic bonding
Conformational stability
Conformation refers to the protein’s 3D structure -> active form of the protein
Solvent Shell – layer of solvent surrounding a protein which stabilises the protein
Conformational stability depends not only the interactions that contributes to the primary to quaternary structures; but also the external
environment
Denaturation occurs when the protein becomes unfolded or inactive
Protein loses 3D structure
Often irreversible and cannot catalyse reactions
Solutes denatures proteins by directly interfering with the forces that holds the protein together disrupts the tertiary and
quaternary structures by breaking the disulphide bridges or by overcoming hydrogen bonds and other side chain interactions
Can be denatured by altering:
o 1) Temperature – increasing temp -> protein gains energy -> vibration breaks the bonds between the amino acids -> protein
unfolds -> affects secondary to quaternary structures
o 2) pH – breaks the ionic bonds affects tertiary and quaternary structures
o 3) Enzymes
o 4) Chemicals – disrupts H-bond -> affects secondary to quarternary structures
Separation techniques
Isoelectric point - The isoelectric point for a polypeptide is the pH at which the molecule does not have a net charge.
Influenced by the anionic or cationic character of the protein’s amino acid side chains at certain pH
Electrophoresis
Enzymes
Structure and Functions
Enzyme – biological catalyst, that accelerates chemical reactions in a biological system by interacting with the reactants (enzyme’s substrates)
which stabilises their transition state, which in turn lowers the activation energy for the reaction, an a lower activation energy which allows for
the reaction to proceed faster.
Enzymes are reusable and are not consumed in the reactions
Enzyme Classification by Reaction Type
Oxidoreductase Oxidation of a hydrogen (or electron) donor (loses) and reduction of
the acceptor (gains)
MCAT – Biological and Biochemical Foundations of Living Systems
Transferases Move a functional group from a donor molecule to an acceptor
molecule
Hydrolases Couple breaking a bond with hydrolytic cleavage
Lyases Breaking a bond with elimination to form a double bond (or ring) or
adding a double bond
Isomerases Alter the geometry or structure of the reactant molecule
Ligases Couple forming a bond (joining 2 molecules) with ATP hydrolysis
MCAT – Biological and Biochemical Foundations of Living Systems
Concept 3A Structure and Functions of Nervous and Endocrine Systems; Coordination of Organ Systems
Nervous and Endocrine systems work together to detect external and internal signals, transmit and integrate information, and maintain
homeostasis
Nervous System: Structure and Function
Structure and Organisation of Nervous System
1/ Central Nervous System (Brain/ Spinal Cord) – integrates sensory information and responds accordingly
Brain – integrates most sensory information and coordinates body functions (both consciously and unconsciously)
Spinal Cord – conduit for signals between the brain and the rest of the body; also controls simple musculoskeletal reflexes without the input
from the brain
- Encased in bone – brain (within cranium); spinal cord (within a canal through the vertebrae)
- Bathed with cerebrospinal fluid (CSF) – provides special chemical environment for the nervous tissue and as a buffer against physical
damage.
- 2 tissues – gray matter and white matter
The Spinal Cord
Structure
Long, thin, tubular bundle of nervous tissue and support cells that extends from the medulla oblongata of the brain to the level of
lumbar region
Encased by vertebral column (the spine)
Peripheral region displays neuronal white matter tracts containing sensory and motor neurons; while internal is the grey, butterfly shaped
central region made up of nerve cell bodies.
Protected by 3 layers of tissue called meninges (dura mater, arachnoid mater, pia mater) and divided into 3 regions (cervical, thoracic and
lumbar vertebrae).
Dura Mater – outermost layer of spinal cord tissue, forming a tough protective coating. Epidural space is between dura mater and
surrounding bone
Arachnoid Mater – middle layer
Pia Mater – innermost protective layer; subarachnoid space is between the pia and arachnoid mater, and is where the cerebral
spinal fluid (CSF) is located – CFS fluid is obtained in a spinal tap from this location at the level of the lumbar area
Cervical – neck and arms ; Thoracic – thorax and abdomen; lumbosacral – pelvic region, legs and feet
Function of Spinal Cord – 1) transmission of neural signals between the brain and the rest of the body (both directions) 2) independent control
of certain reflexes (reflex arc)
2/ Peripheral Nervous System (all parts outside of Brain / Spinal Cord) – network of spinal and cranial nerves that are linked to the brain.
Consist of sensory receptors which processes changes in internal/external environment. Information is sent to CNS via afferent sensory
nerves
Subdivided into
1) Somatic Nervous System (SNS) – carries signals to and from skeletal muscles; voluntary; usually in response to external stimuli.
2) Automatic Nervous System (ANS) – regulates the internal environment by controlling smooth and cardiac muscles and the
organs of the digestive, cardiovascular, excretory, and endocrine systems; involuntary; efferent neurons
Two neurons to transmit messages from the spinal cord – preganglionic and postganglionic
Sympathetic – ‘fight or flight’ response to stress, danger, excitement, exercise, emotions and embarrassment. – Increase
respiration and heart rate, releases adrenaline and other stress hormones, and decreases digestion.
MCAT – Biological and Biochemical Foundations of Living Systems
Parasympathetic – ‘rest and digest’ response when the body is relaxed, resting and feeding. Decrease respiration, and heart
rate, increase digestion and permit elimination of waste.
Both systems have opposing influences on the same organs and
thus exert antagonistic control
Major Functions (S,I,M)
1. Sensory (Input) - detect external/internal signals
from sensory receptors that monitors internal and external
conditions. Signals are passed on to the Central Nervous System
(CNS) for processing by afferent neurons (and nerves)
2. Integration – processing of sensory signals passed
into the CNS. Occurs in the gray matter of the brain and spinal
cord and is performed by the interneurons.
3. Motor (Output) – carry signals from the gray matter
of the CNS through the nerves of the peripheral nervous system
(PNS) to effector cells via the efferent neurons.
Sensory Neurons – senses, carries sensory signals from the body to the CNS
Efferent Neurons – causes an effect; carries motor signals from the CNS to the body
MCAT – Biological and Biochemical Foundations of Living Systems
Reflexes
Feedback Loop
Positive – to reinforce initial event
Uterine contraction leads to oxytocin release causes more uterine contraction
Blood clotting platelets activated at wound site will result in more platelet activation and clumping
Negative – to counteract initial event
Drop in blood pressure causes ADH release, which increase BP
Reflex Arc – a neural pathway that controls an action reflex.
Do not pass through the brain, but synapse in the spinal cord in higher animals
Allows reflex actions to occur relatively quickly by activating spinal motor neurons without delay of routing signals through the brain
Two types of Reflex Arcs – 1) Automatic – affecting inner organs 2) somatic reflex – affecting muscles
Monosynaptic – single synapse between the sensory neuron that receives stimulus and the motor neuron that responds to it. (knee jerk
reflex); Polysynaptic – at least one interneuron between the sensory and motor neuron (withdrawal reflex – stepping on nail)
Nerve Cells
Nerves conveys information in the form of electrochemical impulses (nerve impulses / action potential) carried by individual neurons.
Types of nerves -
1) Afferent – conducts signals from sensory neurons to the CNS
2) Efferent – conducts signals away from the CNS to the target muscles/gland
3) Mixed - both afferent and efferent axons, and thus conduct both incoming sensory information and outgoing muscle commands in
the same nerve bundle.
Cluster of neurons – nucleus (CNS); ganglion (PNS)
Cell body - site of nucleus
Dendrites - branched extensions of cell body which revives signals from other neutrons
Axon
longer extension of the cell body and transmits signals to other cells (neurons or effector cells)
Divides into several branches, each with ends in a synaptic terminal
Bundle of Axons – called tracts (in CNS); nerves in (PNS)
Myelin Sheath
Axons can be myelinated or un-myelinated
Contains Layer of fatty insulating substance (Glia) which Insulates and surrounds the axon
Does not allow Na+/K+ to pass through it – which allows fast propagation of action potentials along neurons in the nervous system
(Saltatory Conduction)
Grey Matter – Un-myelinated neurons and other cells of the CNS such as glial cells & dendrites
White Matter – composed mainly of bundles of myelinated axons, with a few neuronal bodies and connects the various grey matter regions
of the nervous system to each other and carries nerve impulse between neuron
Synapse - Site of impulse propagation between a synaptic terminal of an axon of a neuron and another cell; Information is passed from the
transmitting neuron (presynaptic cell) to the receiving cell (postsynaptic cells) by means of neurotransmitter (transmitter molecule)
Nodes of Ranvier – Microscopic gaps found within the myelinated axon which speeds up propagation of action potentials along the axon via
saltatory conduction
Glia/ Neuroglia – supporting cells that are essential for the structural integrity of the nervous system and the normal functioning of the
neurons; do not convey electrical signals; capable of cell division
6 Types of glia cells (MESAOS)
Microglia – macrophages of the CNS
Ependymal Cells – epithelial cells that line the space containing the cerebrospinal fluid
Satellite cells – supports ganglia
Astrocytes – provide structural support for neurones and regulate the extracellular concentrations of ions and neurotransmitters
Oligodendrocytes – form myelin in CNS
Schwann Cells – myelin in PNS
Glia that form the myelin sheaths around the axons (wraps them in many layers of membrane); mostly lipid (poor conductor of electrical
currents thus providing electrical insulation of the axon)
Neuron Communciation and Biosignalling
Neuronal Charged Membrane
Neurons has a charged cellular membrane
Change in response to neurotransmitter molecule released from other neurons and environmental stimuli
Lipid bilayer membrane that surrounds neuron is impermeble to charged molecules or ions
More permeable to K+ -> K+ leaks out through potassium leakage channels (holes in cell wall)
Partially permeable to Na+ sodium leaks slowly through sodium leakage channels
Types of Membrane Potential
Membrane potential – electrical potential difference across their plasma membrane caused by the differences in the concentration
of ions inside and outside the cell.
Equilibrium Potential – membrane voltage at equilibrium when the electrical gradient balances the concentration gradient
Resting Potential – membrane potential when the neurons are not transmitting signals
MCAT – Biological and Biochemical Foundations of Living Systems Framework
o -60 and -80mV: more Na+ outside than inside the neurons and more K+ inside than outside the neuron
o Na+ and K+ gradients maintained by the sodium-potassium pump as the Na+ and K+ ions leaks out through the K+/Na+
leakage channels
o Results from the diffusion of Na+ and K+ through ion channels that are always open
Action Potential – membrane potential during transmission of a signal within a neuron
Nerst Equation
Action Potential – releases neurotransmitter by presynpatic axon terminal and picked up by receptor of postsynaptic neuron
initiated at the beginning of the axon
‘all-or-none’ – either the membrane reaches treshold and everything occurs or the membrane does not reach and nothing happens
All peak at same voltage intensity of stimuli can be initiated by frequency of action potential or the numer and type of receptors
that respond but signals are not stronger
Electrical Synapse
Direct physical connection between the presynaptic neuron and
the postsynpatic neuron
Connection takes form of gap junction – which allows current –
ion to flow directly from one cell to another
Do not involve diffusion of chemicals and transmits signals more
rapidly than chemical synapse
Signals are propagated bidirectionally – meaning both cells
involved in the synapse can send and receive signals
Chemical Synapse
- Neurotransmitter are released and carries information from
presynaptic to post-synaptic cell
- Unidirectional
When neurotransmitter binds to its receptor – causes ion
channels to open or close, producing a localised change in the membrane potential
Excitatory Postsynaptic Potential (EPSP) – depolarising which brings membrane potential toward the tresholds; single EPSP may
not be large enough to bring neuron to treshold but a sum of EPSP can trigger an action potential
Inhibitory Postsynaptic Potential (IPSP) – hyperpolarising, and brings membrane potential below treshold
Spatial Summation – integration of postsynaptic potential that occurs in different location, but at about the same time
Temporation Summation – integration of postsynaptic potential that occur in the same location, but at slightly different times.
Gated Ion Channel – ion channels are gated and do not always freely allow ions to diffuse across the membrane.
Voltage Gated Channel - responds to changes in the electrical properties of the membrane in which it is embeded.
Ligand Gated Ion Channel – opens when a signaling molecule (ligand) binds to the extracellular region.
1. The ligand (neurotransmitter) binds to the extracellular region of the channel
2. Induces a conformational change of the protein -> channel opens, allowing certain ions to pass through (reverse case is also true
where channel is always open, and ligand binding causes it to open)
Enzyme Linked Receptors – receives signals from chemical messengers + function as enzymes
1. Extracellular side binds with ligand
2. Causes intracellular side to act as an enzyme
Lipids
Biological molecules that are nonpolar (hydrophobic); made up of mostly hydrocarbon chains, soluble in organic solvent – alcohols & ester.
Function – 1) store energy for long term use in the form of fat 2) insulation from environment 3) make up cell membrane and provide building
blocks for hormones.
Terpenes – organic compounds characterised by the presence of the repeating carbon skeleton of isoprene (C5H8)
Terpenoids
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MCAT – Biological and Biochemical Foundations of Living Systems
Endocrine System: Hormones and Their Sources
Endocrine System – consists of cells, tissues, and organs that secretes hormones to control and regulate body processes (specific chemical
control at cell, tissue and organ level)
Endocrine Gland – ductless glands which secretes hormones directly into the surrounding fluids
Hormones
Signalling molecule released by endocrine glands into the blood stream to target cells to explicit a response, in response to specific stimuli.
- Highly specific – requires specific binding sites (receptor proteins)
- Affect target cell at cellular level by – 1) change cell membrane permeability 2) alter metabolic pathway 3) change rate of cell division
- Most cells have receptors for more than one type of hormones and hormones can interact with one another
-
3 mechanisms: 1) humoral – due to change in chemicals in blood 2) neural – direct nervous stimulation 3) hormonal
Endocrine Gland – ductless glands which secretes hormones directly into the surrounding fluids.