Xie 2014
Xie 2014
Xie 2014
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eriodontal abscess has been de-
to clindamycin, doxycycline, amoxicillin, imipenem, cefra- fined as a suppurative lesion that is
dine, cefixime, roxithromycin, and metronidazole were de- associated with periodontal break-
termined using the agar dilution method, and polymerase down and localized pus in the gingival
chain reaction assays were performed to detect the pres- wall of the periodontal pocket.1 The vast
ence of the ermF, tetQ, nim, and cfxA drug resistance majority of dental abscesses with end-
genes. odontic or periodontal pocket origins
Results: A total of 60 different bacterial colonies was are polymicrobial anaerobic infections.2
isolated and identified. All of the isolates were sensitive These infections are predominantly at-
to imipenem. Of the strains, 6.7%, 13.3%, 16.7%, and 25% tributable to strict anaerobes, such as
were resistant to doxycycline, metronidazole, cefixime, and Gram-negative anaerobic bacteria, and
amoxicillin, respectively. The resistance rate for both clinda- partially facultative anaerobes, such as
mycin and roxithromycin was 31.7%. Approximately 60.7% the Streptococcus milleri group.3 How-
of the strains had the ermF gene, and 53.3% of the amoxicil- ever, in dental abscess, anaerobes out-
lin-resistant strains were found to have the cfxA gene. Two number aerobic and facultative bacteria
nim genes that were found in eight metronidazole-resistant in ratios ranging from 10:1 to 10,000:1,
strains were identified as nimB. with anaerobic Gram-negative bacilli
Conclusions: In the present study, the Prevotella species predominating.3 In periodontal abscesses,
are the most frequently isolated obligate anaerobes from Bacteroides forsythus, Fusobacterium
periodontal abscesses. The current results show their alarm- spp., Prevotella intermedia, Prevotella ni-
ingly high resistance rate against clindamycin and roxithro- grescens, and Porphyromonas gingivalis
mycin; thus, the use of these antibiotics is unacceptable for are the most prevalent species,4,5 and
the empirical therapy of periodontal abscesses. A brief these bacteria are more commonly iso-
prevalence of four resistance genes in the anaerobic bacte- lated from periodontal abscesses than
ria that were isolated was also demonstrated. J Periodontol endodontic abscesses. However, previous
2014;85:327-334. studies using swabs of purulent material
have demonstrated poor recovery of
KEY WORDS
strict anaerobes, which implicated strep-
Anti-infective agents; microbiology; periodontics. tococci or staphylococci as the causative
microorganisms of suppurative dental
* Department of Stomatology, Hua Shan Hospital, Fudan University, Yangpu, Shanghai, infection. This difference in recovery was
China.
† Department of Infectious Disease, Hua Shan Hospital, Fudan University. attributable to poor sampling techniques
and inadequate culture methods in these
investigations.6,7
doi: 10.1902/jop.2013.130081
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Drug Resistance of Obligate Anaerobes of Periodontal Abscess Volume 85 • Number 2
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J Periodontol • February 2014 Xie, Chen, He, et al.
Table 1.
Oligonucleotide Sequences and PCR Conditions Used to Detect Target Resistance Genes
Resistance Amplicon
Genes Oligonucleotide Sequence 59-39 Amplification Cycles Size (bp) Reference
cfxA/cfxA2 CGT AGT TTT GAG TAT AGC TTT 94C · 30 seconds, 35 cycles of 94C · 30 966 This study
seconds, 52C · 30 seconds, 72C · 75
seconds, and 72C · 5 minutes
GAT GTT GCC TAT ATA TGT C
tetQ TTA TAC TTC CTC Cgg CAT C 94C · 30 seconds, 35 cycles of 94C · 30 904 This study
seconds, 52C · 60 seconds, 72C ·
1.15 minutes, and 72C · 5 minutes
ATC ggT TCg AgA ATg TCCA
nim ATG TTC AGA GAA ATG GGG CGT 94C · 30 seconds, 35 cycles of 94C · 30 458 9
AAG seconds, 55C · 60 seconds, 72C · 10
minutes, and 72C · 5 minutes
GCT TCC TTG CCT GTC ATG TGC TC
ermF CGG GTC AGC ACT TTA CTA TTG 94C · 30 seconds, 35 cycles of 94C · 30 487 15
seconds, 50C · 30 seconds, 72C · 1
minutes, and 72C · 5 minutes
GGA CCT ACC TCA TAG AGA AG
bp = base pair.
sequence similarity of >99% to that of the prototype EUCAST, the breakpoints of ‡32 and ‡8 mg/mL for
strain sequence in GenBank; identification at the roxithromycin and cefixime, respectively, were used
genus level was defined as a 16S rDNA sequence in accordance with previous studies.25,26
similarity of >97% to that of the prototype strain
Detection of Drug Resistance Genes
sequence in GenBank.21
The ermF, tetQ, nim, and cfxA genes were amplified
Antimicrobial Susceptibility Testing using polymerase chain reaction (PCR) assays under
Antibiotic susceptibilities to clindamycin,§§ doxy- the conditions shown in Table 1 and with a total
cycline,ii amoxicillin,¶¶ cefradine,## cefixime,*** volume of 50 mL that was composed of 25 mL pre-
roxithromycin,††† metronidazole,‡‡‡ and imipenem§§§ mix,†††† 20 mM of each primer, and 5 to 100 ng
were determined using the agar dilution method22 bacteria genomic DNA. An ermF amplification was
with Brucella agariii plates that were supplemented performed in all strains because of its high per-
with 5 mg/mL hemin,¶¶¶ 1 mg/mL vitamin k1,### and centage of resistance to clindamycin, whereas tetQ,
5% defibrinated sheep blood. Two-day-old bacteria nim, and cfxA amplification were only performed in
(104 to 105 colony forming units) were inoculated the resistant strains because of their relatively low
onto the plates using multipoint inoculators.**** percentage of resistance to metronidazole, doxycy-
The minimal inhibitory concentration (MIC) was cline, and amoxicillin. The amplification products
defined as the lowest concentration of the antibiotic were sequenced using 3,730 and compared using
that repressed visible growth. Bacteroides fragilis the BLASTN program on the Nucleotide collection
ATCC 25285 served as the control strain. The (nr/nt) database in GenBank.
breakpoints were used in accordance with the rec-
ommendations of the Clinical and Laboratory §§ Clindamycin, National Institutes for Food and Drug Control, Beijing,
Standards Institute (CLSI):23 1) clindamycin (‡8 China.
ii
mg/mL); 2) imipenem (‡16 mg/mL); 3) metronida- ¶¶
Doxycycline, National Institutes for Food and Drug Control.
Amoxicillin, National Institutes for Food and Drug Control.
zole (‡32 mg/mL); 4) doxycycline (‡8 mg/mL); and ## Cefradine, National Institutes for Food and Drug Control.
5) amoxicillin (‡2 mg/mL). When CLSI antimicrobial *** Cefixime, National Institutes for Food and Drug Control.
††† Roxithromycin, National Institutes for Food and Drug Control.
breakpoints were not established, the breakpoints ‡‡‡ Metronidazole, National Institutes for Food and Drug Control.
§§§ Imipenem, Hangzhou MSD Pharmaceutical, Hangzhou, China.
of the European Committee on Antimicrobial iii Brucella agar, BD Difco, San Jose, CA.
Susceptibility Testing (EUCAST)24 were followed. ¶¶¶ Hemin, Sigma-Aldrich.
### Vitamin k1, Sigma-Aldrich.
Because the breakpoints of roxithromycin and ce- **** Multipoint inoculators, Denley Instruments, Billinghurst, Sussex, U.K.
fixime have not yet been determined by CLSI and †††† Premix Ex Taq, Takara, Kyoto, Japan.
329
Drug Resistance of Obligate Anaerobes of Periodontal Abscess Volume 85 • Number 2
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J Periodontol • February 2014 Xie, Chen, He, et al.
Table 3.
MIC (mg/mL) Range and MIC50 and MIC90 Values of Prevotella and Non-Prevotella
Isolated From Periodontal Abscesses for Eight Antibiotics Tested in China
Resistant Strains/Total
Antibiotics Range (mg/mL) MIC50 MIC90 (resistance percentage)
Total (n = 60)
Cefradine <0.06 to >128 0.5 16 NA
Cefixime <0.06 to 32 0.125 8 10 of 60 (16.7%)
Amoxicillin <0.06 to >128 <0.06 32 15 of 60 (25%)
Clindamycin <0.06 to >128 <0.06 >128 19 of 60 (31.7%)
Metronidazole <0.06 to >128 0.5 >128 8 of 60 (13.3%)
Roxithromycin <0.06 to >128 2 >128 19 of 60 (31.7%)
Doxycycline <0.06 to >8 <0.06 1 4 of 60 (6.7%)
Imipenem <0.06 to 0.5 <0.06 <0.06 0 of 60 (0%)
Prevotella (n = 42)
Cefradine <0.06 to >128 0.5 32 NA
Cefixime <0.06 to 32 0.125 4 4 of 42 (9.5%)
Amoxicillin <0.06 to >128 <0.06 16 13 of 42 (30.9%)
Clindamycin <0.06 to >128 <0.06 >128 16 of 42 (38.1%)
Metronidazole <0.06 to >128 0.5 8 4 of 42 (9.5%)
Roxithromycin <0.06 to >128 2 64 11 of 42 (26.2%)
Doxycycline <0.06 to >8 <0.06 0.5 2 of 42 (4.8%)
Imipenem <0.06 to 0.5 <0.06 <0.06 0 (0%)
Non-Prevotella anaerobes (n = 18)
Cefradine <0.06 to 8 0.5 8 NA
Cefixime <0.06 to 16 1 16 6 of 18 (33.3%)
Amoxicillin <0.06 to 64 <0.06 8 2 of 18 (11.1%)
Clindamycin <0.06 to >128 <0.06 >128 3 of 18 (16.7%)
Metronidazole <0.06 to >128 0.5 128 3 of 18 (16.7%)
Roxithromycin <0.06 to >128 4 >128 6 of 18 (33.3%)
Doxycycline <0.06 to >8 <0.06 8 2 of 18 (11.1%)
Imipenem <0.06 to 0.5 <0.06 <0.06 0 of 60 (0%)
The following breakpoints were used in accordance with CLSI (2012):23 1) clindamycin (‡8 mg/mL); 2) imipenem (‡16 mg/mL); 3) metronidazole (‡32 mg/
24
mL); and 4) doxycycline (‡8 mg/mL). The following breakpoint was used according to EUCAST (2012): amoxicillin (‡2 mg/mL). The following breakpoints
were used according to references 25 and 26: 1) roxithromycin (‡32 mg/mL); and 2) cefixime (‡8 mg/mL).
MIC50 or MIC90 = MICs for 50% or 90% of the organisms, respectively; NA = Because no breakpoint was available for cefradine, resistance percentage was not
evaluated.
common as the black-pigmented species.1 How- rate renders it unacceptable for the empirical ther-
ever, in the research of the present authors, black- apy of severe infections that are predominantly
pigmented Prevotella (48.3%) had a higher ratio caused by Prevotella species. The detection rate for
than non-black-pigmented Prevotella (21.7%), and the ermF gene was 60.7% (13 of 19) in clindamycin-
this finding may be because of the higher virulence and/or roxithromycin-resistant Prevotella species,
of the black-pigmented Prevotella to cause in- which was slightly higher compared to the findings
fections.27 However, some of the non-Prevotella of Chung et al.,31 who found a 55.6% (20 of 36)
genera, such as Shuttleworthia and Propioni- detection rate in clinical anaerobic bacteria. Other
bacterium, that were isolated in this research have erm genes (ermB, ermC, ermQ, ermT, and erm35)
rarely been reported in periodontitis,28,29 and more have also been reported to encode macrolides and
information is needed to understand their clinical lincomycin resistance in anaerobes,15 which may
role in periodontal abscesses. explain the resistance of the non-tested ermF-neg-
In research by the present authors, clindamycin ative strains in this study.
was the least effective antibiotic against Prevotella, Tetracycline is one of the most widely used an-
which had 38.1% (16 of 42) resistant strains, and tibiotics worldwide, but its usage has decreased
this finding was in accordance with a previous because of increasing bacterial resistance to this
study30 in which 31% of the Prevotella species was drug. Doxycycline as a semisynthetic tetracycline
resistant to clindamycin. This alarming resistance has been shown to significantly reduce the anaerobic
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Drug Resistance of Obligate Anaerobes of Periodontal Abscess Volume 85 • Number 2
Table 4.
Distribution of Resistance Genes of Resistant Strains Isolated From Periodontal Abscess
population in plaque without increasing the pop- cfxA, although their ability to produce b-lactamases
ulation of resistant bacteria or allowing the bacteria remains untested.
to acquire antibiotic resistance.32 In the present Metronidazole is commonly used for the treatment
research, the rate of resistance to doxycycline is as of infections that are caused by anaerobic organ-
low as 6.7%, and some articles reported doxycy- isms. In the present research, it was found that eight
cline-resistant anaerobic bacteria that were isolated of the 60 anaerobic strains were resistant to met-
from periodontitis. Doxycycline could be recom- ronidazole and that four of these strains belonged to
mended as one of the first-line antimicrobial drugs Prevotella. Some studies have examined the distri-
against periodontal disease because of its high ac- bution of nim genes in Prevotella spp. Lubbe et al.39
tivity and low resistance. Tetracycline resistance has detected one nimA-positive strain among seven
always been associated with the presence of the tetQ metronidazole-resistant Prevotella species, whereas
gene, which has been found in 12 anaerobic gen- Katsandri et al.40 found one nimC-positive strain and
era.33,34 However, only two of four doxycycline- two nimE-positive isolates among 57 metronidazole-
resistant strains were detected to have tetQ, and resistant Prevotella species. In the present research,
other genes that promoted resistance are not iden- two Prevotella species strains (P. dentalis and P.
tified in this study. denticola) were detected to harbor nimB. Because
It is inspiring that all of the strains in the present five nim-negative strains with an MIC >128 mg/mL
study are susceptive to imipenem. However, imi- were recovered, other potential resistance mecha-
penem has an extremely broad spectrum of activity nisms may exist for these isolates, such as decreased
and is not recommended to use empirically in treating pyruvate:ferredoxin oxidoreductase activity, over-
light oral infections to prevent uncontrollable re- expression of efflux pumps, or alterations of the
sistance. rhamnose catabolism pathway.9,41
An amoxicillin–metronidazole combination has There are some limitations to the present study.
been used to treat periodontitis for the long term. In First, the anaerobic organisms should have been
the present study, 30.9% (13 of 42) of the Prevotella incubated for 7 to 14 days. However, after 4 days of
strains are resistant to amoxicillin; Kuriyama et al.35 incubation, the fast-growing colonies had increased
showed that amoxicillin resistance occurred in 34% in size and would have grown over some of the strict
of Prevotella isolates and that all of these resistant anaerobes. Therefore, the inoculations were limited
strains were found to produce b-lactamase. Reports to 4 days of incubation, and the development of the
indicated that the resistance rate for amoxicillin slow-growing anaerobes was likely inhibited. This
ranged from 9% to 54% in common isolates from may explain the high proportion of fast-growing
acute dental abscesses.36 Amoxicillin is advocated Prevotella and the loss of slow-growing anaerobes.
as a suitable first-line agent in these situations, Second, a limited amount of isolates from the primary
although the increased resistance of Prevotella plates based on typical morphology was chosen; thus,
strains to penicillins remains a matter of con- some anaerobes with similar phenotypes may have
cern.37 Prevotella species are known to produce been overlooked by the present study. Last, only the
b-lactamases that are encoded by cfxA,38 which antimicrobial resistance genes that had been fre-
may explain their resistance to amoxicillin. In the quently reported in Prevotella were detected; all other
present research, 61.5% (eight of 13) of amoxicillin- resistance genes that could encode for other anaer-
resistant Prevotella strains were found to harbor obes were not studied.
332
J Periodontol • February 2014 Xie, Chen, He, et al.
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Drug Resistance of Obligate Anaerobes of Periodontal Abscess Volume 85 • Number 2
from a periodontal pocket. J Periodontol 1997;68:369- cepA, from Bacteroides fragilis reveals a new subgroup
374. of Ambler class A beta-lactamases. Antimicrob Agents
30. Teng LJ, Hsueh PR, Tsai JC, Liaw SJ, Ho SW, Luh KT. Chemother 1993;37:2391-2400.
High incidence of cefoxitin and clindamycin resistance 38. Iwahara K, Kuriyama T, Shimura S, et al. Detection of
among anaerobes in Taiwan. Antimicrob Agents Che- cfxA and cfxA2, the beta-lactamase genes of Prevo-
mother 2002;46:2908-2913. tella spp., in clinical samples from dentoalveolar
31. Chung WO, Werckenthin C, Schwarz S, Roberts MC. infection by real-time PCR. J Clin Microbiol 2006;
Host range of the ermF rRNA methylase gene in 44:172-176.
bacteria of human and animal origin. J Antimicrob 39. Lubbe MM, Stanley K, Chalkley LJ. Prevalence of nim
Chemother 1999;43:5-14. genes in anaerobic/facultative anaerobic bacteria iso-
32. Walker CB, Godowski KC, Borden L, et al. The effects of lated in South Africa. FEMS Microbiol Lett 1999;172:
sustained release doxycycline on the anaerobic flora 79-83.
and antibiotic-resistant patterns in subgingival plaque 40. Katsandri A, Avlamis A, Pantazatou A, Houhoula DP,
and saliva. J Periodontol 2000;71:768-774. Papaparaskevas J. Dissemination of nim-class genes,
33. Connell SR, Tracz DM, Nierhaus KH, Taylor DE. encoding nitroimidazole resistance, among different
Ribosomal protection proteins and their mechanism species of Gram-negative anaerobic bacteria isolated
of tetracycline resistance. Antimicrob Agents Chemo- in Athens, Greece. J Antimicrob Chemother 2006;58:
ther 2003;47:3675-3681. 705-706.
34. Roberts MC. Update on acquired tetracycline resis- 41. Diniz CG, Farias LM, Carvalho MA, Rocha ER, Smith
tance genes. FEMS Microbiol Lett 2005;245:195-203. CJ. Differential gene expression in a Bacteroides fragilis
35. Kuriyama T, Absi EG, Williams DW, Lewis MA. An metronidazole-resistant mutant. J Antimicrob Chemo-
outcome audit of the treatment of acute dentoalveolar ther 2004;54:100-108.
infection: Impact of penicillin resistance. Br Dent J
2005;198:759-763, 754, 778. Correspondence: Prof. Liying Yu, Department of Stomatol-
36. Baumgartner JC, Xia T. Antibiotic susceptibility of ogy of Hua Shan Hospital, Fudan University, 200040
bacteria associated with endodontic abscesses. J En- Shanghai, China. E-mail: wuyu1984@hotmail.com.
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37. Rogers MB, Parker AC, Smith CJ. Cloning and charac- Submitted February 5, 2013; accepted for publication
terization of the endogenous cephalosporinase gene, April 20, 2013.
334