Diagnosis of Autoimmune Diseases: Presented By, S.Nagaraj, M.Sc. 3 Year
Diagnosis of Autoimmune Diseases: Presented By, S.Nagaraj, M.Sc. 3 Year
Diagnosis of Autoimmune Diseases: Presented By, S.Nagaraj, M.Sc. 3 Year
diseases
Presented by,
S.Nagaraj,
M.Sc. 3rd year.
Autoimmunity
Introduction
• Positive family history for the same disease, or other diseases known to be
autoimmune.
• Cells or tissues may undergo antigenic alteration to form neoantigens which induces an
immune response.
• Neoantigens can arise by physical agents. such as irradiation, photosensitivity and cold
allergy.
1. Certain self-antigens are present in a closed system and are not accessible to the immune apparatus.
these are known as sequestered antigens.
1. the similarity between some foreign and self-antigens is the basis of cross-reacting antigen theory of
autoimmunity.
2. Organ specific antigens are present in many species. injection of these heterologous antigens may induce
an immune response, damaging the particular organ or tissue in the host.
3. For example, anti-rabic immunisation with the neural vaccine of infected sheep brain tissue.
• In this hypothesis, antigen generally activates only its corresponding B cell, certain stimuli non-
specifically turn on multiple B cell clones.
• Multiple non-specific antibodies are form during some infectious diseases, such as anti-human
erythrocyte cold antibodies in mycoplasma pneumonia and anti-sheep erythrocyte antibodies in
infectious mononucleosis.
• Common hematologic parameters also include an elevated or decreased platelet count and/or white
blood cell count. Leukopenia and thrombocytopenia are common in patients with systemic lupus
erythematosus (SLE).
• Testing will find aberrations in serum levels of specific organ enzymes or abnormalities in metabolic
processes that are reflected in the comprehensive metabolic panel.
prothrombin time (PT) ,suggests an inhibitor of the clotting process is present as seen in the antiphospholipid
syndrome.
• Hypercalcemia can be observed in approximately 30% of patients with sarcoidosis. An increase in muscle
enzymes, [creatinine kinase, alanine transaminase (ALT), and aspartate aminotransferase (AST)] can be seen
• Serum protein levels are helpful to screen for abnormal elevations of immunoglobulin.
• The urinalysis is commonly used to assess renal injury (glomerulonephritis, interstitial nephritis) and will show
proteinuria, haematuria or active sediment . Many other illnesses such as diabetic nephropathy, poorly
controlled hypertension, or infections will test similarly but when autoimmune disease is suspect, the common
• Historically, many different methods were used to test for the presence an autoantibody.
• Today, testing is principally done with enzyme immunosorbent assays (EIA) because of
cost saving measures with mechanization.
Enzyme Linked Immunosorbent Assay
Enzyme-linked immunosorbent assay (ELISA)
• The basic components of this laboratory method include a substrate where an antigen is fixed (typically a 96
well micro-well plate), patient's sera, washing solutions and a detection method where an enzyme is linked to an
antibody that detects the antigen.
• In a typical double-antibody sandwich ELISA, an antibody that is attached to the bottom of a well provides both
antigen capture and immune specificity, while another antibody linked to an enzyme provides detection and acts
as an amplification factor. This allows for accurate and sensitive detection of the antigen of interest.
• The performance is largely dependent on antibody quantity, kit manufacturer, operator skill and experience.
• ELISA permits measurement of only one antigen at a time for a given aliquot of sample and it has a limited
dynamic range .
Anti-nuclear antibody (ANA)
• Autoantibodies to nuclear antigens are a diverse group of antibodies that react against nuclear, nucleolar or perinuclear
antigens.
• These antigens represents cellular components such as nucleic acid, histone, chromatin, nuclear and ribonuclear proteins.
• The ANA hallmarks the serologic diagnosis of SLE, but finding an ANA is common to most other autoimmune diseases.
• Immunofluorescence is one of the method for testing of the patient's serum, at various dilutions, using a cell substrate.
Typically, screening patient's serum for the detection of an ANA with ELISA provides high sensitivity but lacks specificity.
• The HEp2 cells (a human laryngeal epithelioma cancer cell line) have been used as the cell substrate because the result
offers the advantage of detecting a nuclear fluorescent pattern. The fluorescent patterns suggest clinical associations with
• Due to time and expense for testing with HEp2 cells, the assay procedures are largely done by ELISA methods.
• Principle
• The assay is for detection of antibodies is a solid phase immunosorbent assay in which the analyte is
indicated by a colour reaction of enzyme and substrate. The ELISA wells are coated with purified antigen
• On adding diluted serum to the wells the antibodies present bind to the antigen
• After incubating at room temperature and washing away unbound material, HRP conjugate anti-IgG
monoclonal antibody is added, which binds to the immobilised antibody.
• For further incubation and washing, TMB is added to the each well. The presence of antigen-antibody-
conjugate complex turns the substrate to a dark blue colour. Addition of stop solution turns the colour to
yellow.
• The colour intensity is directly proportional to the amount of autoantibodies present in the original serum
sample.
ANA Ds DNA Histone Nucleoprotein Riboprotein (Sm)
SLE
Specificity 60 95 50 Medium 99
RA
Sensitivity 45 1 Low 25 1
Specificity 60 Low
Scleroderma
Specificity 50
PM/DM
Specificity 60
Sjögren's
• RF is an autoantibody that reacts to the Fc portion of polyclonal IgG. But, they can be any class of
immunoglobulin.
• RF is helpful when evaluating patients who may have rheumatoid arthritis as the sensitivity is ∼70%
with a specificity of ∼70%.
• Rheumatoid factor is absent in ∼15% of patients with rheumatoid arthritis. However, ∼15% of the
healthy population may have a low titre RF.
• Rheumatoid factor positive patients are more likely to have progressive, erosive arthritis with loss of
joint mobility and also have extraarticular manifestations including rheumatoid nodules, vasculitis,
Felty's syndrome and secondary Sjögren's syndrome.
• In addition, the presence of RF is seen in other autoimmune disorders including Sjogren's syndrome,
SLE, cryoglobulinemia, in pulmonary diseases such as interstitial fibrosis and silicosis and various
infectious diseases.
• The mechanism includes, Inflammation activates the enzyme peptidyl-arginine deiminase which
incorporates citrulline into certain proteins.
-- In RA, autoantibodies are formed against the citrullinated protein (anti-CCP).
• The presence of serum anti-CCP antibodies are ∼95% specific for the diagnosis of RA, with sensitivity
similar to rheumatoid factor.
• Testing for both anti-CCP and RF is beneficial when excluding the diagnosis of RA rather than testing for
either antibody alone.
• In early undifferentiated disease, anti-CCP positive patients tends to more severe, erosive and aggressive
disease.
• Anti-CCP can also be present in other disease states such as some children with JIA, psoriatic arthritis,
lupus, Sjögren's syndrome, inflammatory myopathies and active tuberculosis.
• Anti-cyclic citrullinated peptide (IgG)
• Anti CP IgG is an indirect solid phase enzyme immunometric assay, designed for the quantitative
measurement of IgG class antibodies directed against citrullinated peptides (CP) in human serum or plasma.
• Significance
• Rheumatoid arthritis is one of the most common autoimmune disease (1-2% of European population)
• The most significant clinical symptom is an inflammation of the synovial membrane, which causes a painful
swelling of an articulations and the ankylosis.
• This diagnostic process plays an important role in the determination of rheumatoid factor (RF) antibodies of
class IgM, detectable in 60-80% of patients with RA. So ,RF antibodies are sensitive but not very specific
marker.
• Anti-citrullinated peptides are hallmark of RA and are used in diagnostic assays, through the use of
citrullinated sequences as antigens.
Anti-double stranded DNA (anti-dsDNA)
• antibodies reacting with native double stranded (ds) DNA as regarded as being specific for SLE and have been observed
in approximately 50-80% of the patients.
• Antibodies against ds-DNA are found during active phase of SLE, the amount of the serum concentration is positively
correlate with the severity of the disease.so, detection of these antibodies is important for the diagnosis and clinical
monitoring of SLE.
• Most patients with SLE display IgG class antibodies against ds DNA. These auto-antibodies are associated with lupus
nephritis.
• The more common current tests are an immunofluorescence assay (IFA) or ELISA.
• The IFA utilizes a target antigen Crithidia luciliae, a flagellated protozoa containing a dsDNA-containing small organelle
called a kinetoplast. The antibodies to dsDNA are detected semi quantitatively by demonstrating IgG bound to the
kinetoplast.
• In contrast, with ELISA testing, the dsDNA is bound to the solid phase of the micro well plate. The serum is incubated and
then the bound IgG is detected.
Specificity and sensitivity
• The antibodies are directed against the phospholipid diphosphatidyl -glycerol (cardiolipin) which is
the complex of cardiolipin and plasma protein B2-glyceroprotein-1.
• Other APS-induced organ manifestations can include Addison’s disease caused by thrombosis of
suprarenal vessels, intestinal necrosis caused by occlusion of the intestinal vessels, hepatic venous
thrombosis and liver and spleen infraction.
• Clinical significance : antibodies against anti-nuclear antigens are directed against various cell nuclear components.
These encompass nucleic acids, cell nucleus proteins and ribonucleoproteins. They are characteristic finding in many
diseases, in particular rheumatic diseases.
• The frequency of anti-nuclear antibodies in inflammatory rheumatic diseases between 20% and 100%, the lowest
occurring in RA at between 20% and 40%
• So, differential ANA diagnosis is indispensable in the identification of individual rheumatic diseases as well as useful in
the diagnosis of further Autoimmune diseases.
• Indications of the test are MCTD, SLE, sjogren’s syndrome (SS), progressive systemic sclerosis, poly/
dermatomyositis, overlap syndrome, CREST syndrome, primary biliary liver cirrhosis.
• Principles of the test
• It provides a qualitative in vitro assay for human autoantibodies of the IgG class to 14 different antigens : nRNP,
Sm, SS-A(SS-A native and Ro-52), SS-B, Scl-70,PM-Scl, Jo-1, CENP B, PCNA, ds DNA, nucleosomes,
• In the first reaction step, diluted patient samples are incubated with the immunoblot strips.
• In the case of positive samples, the specific IgG antibodies will bind to the corresponding antigenic site.
• To detect the bound antibodies, a second incubation is carried out using an enzyme labelled anti-human IgG
• It provides a qualitative in vitro assay for human autoantibodies of the IgG class to 6 different
antigens : amphiphysin, CV2, PNMA2 (Ma2/Ta), Ri, Yo and Hu in serum or plasma.
• The strips coated with parallel lines of highly purified antigens and antigen fragments. In the first
reaction step, diluted patient samples are incubated with the immunoblot strips.
• In the case of positive samples, the specific IgG antibodies will bind to the corresponding antigenic
site .
• To detect the bound antibodies, a second incubation is carried out using an enzyme labelled anti-
human IgG catalysing a colour reaction.
sensitivity
Antibodies N sensitivity
Anti-amphyphysin 2 100%
Anti-CV2 4 100%
Anti-PNMA2 9 89%
Anti-Ri 8 100%
Anti-Yo 20 100%
Anti-Hu 27 100 %
Specificity is 100%
• Anti-MPO, -PR3 and –GBM (IgG)
• Indications : It provides a qualitative in vitro assay for human antibodies of the immunoglobulin class IgG
against the three different antigens myeloperoxidase (MPO), proteinase3 (PR3) and glomerular basement
membrane (GBM antigen) in serum or plasma for the diagnosis of granulomatosis with polyangiitis (GPA),
microscopic polyarteritis with Goodpasture syndrome.
• Principle
• In the first reaction step, diluted patient samples are incubated with the immunoblot strips.
• In the case of positive samples, the specific IgG antibodies will bind to the corresponding antigenic site.
• To detect the bound antibodies, a second incubation is carried out using an enzyme-labelled anti-human IgG
catalysing a colour reaction.
• Clinical significance
• Anti-neutrophil cytoplasmic antibodies (ANCA) are autoantibodies against antigens localised predominantly in the cytoplasmic granules of
• ANCA showing a granular florescence in IIFT that is evenly spread over the entire cytoplasm of the granulocytes, excepting the nuclei, are
called cANCA.
• It produce a predominantly smooth, partly fine granular florescence wrapped ribbon like around the cell nuclei (perinuclear) of the granulocyte
• Measuring total quantitative immunoglobulin levels are a key component to any immunological
evolution. Ig levels reflects B cell function. serum Ig levels aid in disease detection. The Quantitative
measurements of serum immunoglobulins are measured by nephelometry.
• Titres to tetanus, Haemophilus influenza type B (HiB), and pneumococcus can easily be tested to
evaluate the quality of the immune response. These levels assess the function of B cells and also
detect defects that may indicate immunodeficiency.
• To assess antibody production, responses to protein and polysaccharide antigens should be
• Testing of specific antibody titres (such as to influenza immunization) are reported relative to
protective values. These values are based on epidemiologic data regarding protection in larger
populations.
• For randomly acquired antibody levels, an initial comparison to protective values
can be used to decide if a proper immune response was achieved.
• The indirect immunofluorescence (IIF) technique, which uses various tissue sections or
the human tumour cell line (HEp-2) as an antigenic source, major implications for the
diagnosis of autoimmune diseases in a routine laboratory settings.
• The IIF staining pattern of a positive sample can be used to evaluate appropriate antigen
specificities.
• The HEp-2 cells used for the detection of autoantibodies, that do not have a satisfactory
ability to give positive IIF results for antibodies to SS-A/Ro-52 and Jo-1 (histidyl-tRNA
synthetase).
• Indirect immunofluorescence (IIF) microscopy is a sensitive method; but, it
has some limitations. they are
• Pro-inflammatory cytokines such as IL-1, IL-6, and TNF-alpha induce synthesis of some
acute phase proteins that include CRP, fibrinogen and haptoglobin.
• The inflammatory markers are not diagnostic of inflammation, but reflect abnormalities
that are seen in autoimmune diseases, infections, malignancies and other illnesses.
• Erythrocyte sedimentation rate (ESR)
• The ESR is the measure of the quantity of red blood cells (RBC) that precipitate in a tube in a
defined time and is based on concentrations and RBC interactions with serum protein.
• Multiple factors influence the ESR. it includes, patient's age, gender, RBC morphology, haemoglobin
concentration, and serum levels of immunoglobulin.
• It is not a diagnostic test, it can be used to monitor disease activity and treatment response and
signal that inflammatory or infectious stress is present.
• For example, in rheumatoid arthritis, the ESR correlates well with disease activity
• C-reactive protein (CRP)
• C-reactive protein (CRP/CRP-high sensitivity) was discovered and named for its reactivity to the C polysaccharide in
the cell wall of S. pneumoniae.
• CRP is an innate immune protein, helps to opsonize pathogens for phagocytosis and activates the complement system.
CRP production is under the control of IL-1, IL-6, and TNF-alpha..
• Unlike the ESR, CRP is a fairly stable serum protein whose measurement is not time-sensitive and is not affected by
other serum components.
• The magnitude of inflammation directly relates to the concentration of CRP. Levels < 0.2 mg/dl are considered normal,
while those >1.0 mg/dL are suggestive off inflammation and infection.
• More recently, the use of high sensitivity CRP has been utilized. This test may better quantify lower levels of
inflammation and has been important in evaluating cardiac disease and other inflammatory states.
• Ferritin
• Serum ferritin is a storage protein for iron and its synthesis is regulated by intracellular iron, cytokines (TNF-alpha, IL-1,
and IL-6), products of oxidative stress, and growth factors.
• Diseases such as adult Still's disease, systemic-onset juvenile idiopathic arthritis, hemophagocytic lymph histiocytosis
and iron overload diseases, including hemochromatosis or hemosiderosis, should be considered with elevated ferritin
levels.
• Ceruloplasmin
• the major copper containing protein in the blood that plays a role in iron metabolism and is increased in acute and
chronic inflammatory states, pregnancy, lymphoma, rheumatoid arthritis and Alzheimer's disease.
• Fibrinogen
• Fibrinogen synthesis is controlled at the transcription level and is increased in the presence of inflammation and
stress that is mediated by IL-6.
• Haptoglobin
• Increased levels of haptoglobin can be seen during inflammation, malignancy, surgery, trauma, peptic ulcer
disease and ulcerative colitis.
• a serum protein synthesized by the liver that aids body tissues in maintaining
oncotic pressure necessary for proper body fluid distribution.
• the rate of synthesis can double in situations of rapid albumin loss as seen in
glomerulonephritis or inflammatory bowel disease, serum levels will decline.
4. Flow cytometry
• Flow cytometry is a technique where particles or tagged cells flow through laser light so that populations of particle/cells
can be counted and phenotyped using cell characteristics and surface proteins.
• Initial applications of flow cytometry pertained to the interest in certain cell populations, for example the numbers of
lymphocytes in patients infected with human immunodeficiency virus (HIV). The number of T cells that are CD4 positive
is an important gauge of severity of HIV infection.
• By using flow cytometry, cell cycle analysis, quantification of malignant cells and activation status of lymphocyte
subpopulations can be determined.
• When evaluating a patient with a suspected immunodeficiency, flow cytometry is crucial to determine the quantitative
number of immune cells (typically T, B and NK (natural killer) cells).
• flow cytometry testing reveals numbers of cells and does not indicate cellular function. Testing for cellular functioning
involves other laboratory methods, such as quantitative immunoglobulin levels to indicate proper B cell function.
5. Cytokine studies
Cytokine studies
• Cytokines are molecules secreted by a variety of cells that function in cellular communication.
• Immunologists are keenly interested in cytokines, particularly those that influence immune function
and inflammation.
• this testing is largely done in research laboratories. Testing is laborious because of the labile nature
of these small molecules. After phlebotomy, the serum needs to be quickly removed from the
cellular components and frozen as quickly as possible and testing should not be delayed.
• Laboratory methods commonly used to assay cytokine levels include flow cytometry and ELISA.
• Cytokines that influence inflammation include IL-1, IL-6 and TNF-alpha. these cytokines promote
inflammation and become targets for therapy.
• Rheumatoid arthritis is the best example of an autoimmune illness where anti-TNF therapy has
revolutionized the natural history of the disease.
• Targeting TNF with proteins (fusion produced or monoclonal antibodies) that antagonize TNF action
results in dramatic improvement of disease activity. In fact, rheumatoid arthritis is the prototypic
autoimmune disease where the efficacy of anti-cytokine therapy is best demonstrated.
• Currently, anti-TNF, anti-IL-1 and anti-IL-6 therapies are proven to be effective in treating
rheumatoid arthritis.
6. Major Histocompatibility Complex (MHC)
(human leukocyte antigen (HLA))
• Human leukocyte antigen (HLA) is synonymous with the major histocompatibility complex (MHC). MHC class I and II
genes are the major genetic determinants of susceptibility to many autoimmune diseases.
• MHC class I molecules include HLA-A, -B, and –C. MHC class II molecules include HLA-DR, HLA-DQ, and HLA-DP.
Detection of HLA type can be done routinely and can be assayed using several methods that include gel
electrophoresis, polymerase chair reaction (PCR), ELISA, and newer methods employing high-throughput detection of
nucleic acid. Many antigens of the MHC, especially of HLA class I and II, have been associated with rheumatic
disorders.
• HLA-B27 is present in approximately 90% - 95% of white patients with ankylosing spondylitis and only 7% to 8% of the
general population. HLA-DR1 and HLA-DR4 increase the risk of polyarticular juvenile idiopathic arthritis (JIA) in many
populations.
• HLA-DR3 and HLA-DR2 are associated with lupus in Caucasian populations, while much of the risk attributable to
MHC is associated with variation at HLA-DRB1 in patients with rheumatoid arthritis.
Conclusion
• Autoimmune laboratories use immunoassays as the basic technique for the determination
of autoantibodies. the central and main procedure for the all autoantibody diagnostic
assays is the capture of autoantibodies from the serum using immobilised autoantigens.
• there is an enormous variability in these tests that has lead to differences In results, a
variable degree of confidence in their utility and even misdiagnosis of the patients
disease.
• There is no universal solution to resolve these problem, but it is possible to improve the
standardisation level for techniques and methods.