Mycobacteria: Nocardia, Rhodococcus, Tsukamurella and Gordonia
Mycobacteria: Nocardia, Rhodococcus, Tsukamurella and Gordonia
Mycobacteria: Nocardia, Rhodococcus, Tsukamurella and Gordonia
OUTLINE
I. Mycobacteria: Gen. C. Decontamination and
Characteristics Digestion
II. M. Tuberculosis D. Factors Affecting the
Complex Action of Decontamination
A. Components of MTC Agent
B. Pathogenesis E. Acid Fast Staining
III. Nontuberculous F. Culture Media
Mycobacteria V. Review Questions
IV. Laboratory Diagnosis VI. References
A. Specimen
Collection and Transport
B. Grading of Sputum
Specimens Fig 1. Mycobacterium tuberculosis (arrows) in a processed sputum
specimen stained by Ziehl Neelsen stain. The Mycobacterium tuberculosis
I. MYCOBACTERIA: GENERAL CHARACTERISTICS is red against a blue background.
Trans # 09 Mycobacteria 1 of 7
• patients with cavitary disease are primary reservoir • Methods of administration:
• Primary route of transmission: Person to person by inhalation → Standard dose: 0.1 ml of PPD
of droplet nuclei: (infectious aerosols, 1 to 5 μm) → Mantoux test- intracutaneous injection; most accurate
• infectious aerosols may also be produced by manipulation of → Von pirquet- scratching the tuberculin in the skin
lesions or processing of clinical specimens in the laboratory → Vollmer patch test- piece of cloth soaked in OT/PPD and
Mycobacterium bovis placed over skin; for infants
• Produces TB in cattle, dogs, cats, swine, parrots and humans → Moro percutaneous test- OT/PPD + lanolin-ointment rubbed
• Primary route of transmission: Ingestion of contaminated milk onto skin
from infected cows or by exposure to animals and their → Tuberculin tine test- multiple puncture technique
carcasses; airborne transmission • Result interpretation
• Attenuated strain is used for vaccination of newborns → After 48 to 72 hours, an infected individual shows a delayed
• Culture: slow growing, small, granular, rounded white colonies hypersensitivity reaction to the PPD, characterized by
and nonpigmented erythema and, most important, induration
− Glycerol selectively inhibits growth
• Biochemical tests: (-) niacin and nitrate
− Susceptible to thiopene-2-carboxylic acid hydrazide
(T2H)
− (-) 68C catalase test
Mycobacterium africanum
• Associated with cases of human TB in tropical Africa
• Detection requires used of spoligotyping
• Inactive biochemically but urease (+); variable (+) in T2H growth
Mycobacterium canettii Fig.3 A positive tuberculin skin test on an arm.
• Is the smooth strain of M. tuberculosis
• Grows more rapidly than M. tuberculosis (6 days on solid media) → The diameter of induration is measured and then interpreted:
• Natural reservoir has not been clearly defined; rarely infects → > 10 mm- indicates infection with M. tuberculosis
humans → > 5mm but < 10 mm- indicates doubtful result; may be due to
• First human isolate was from a cervical lymph node (Somalic other mycobacteria
child); also isolated from AIDS patient with mesenteric TB → < 5mm- negative; repeat test with 250 TU
• Biochemical test: (+) niacin and reduced nitrate to nitrite Pott’s Disease
Mycobacterium microti • Also known as tuberculosis spondylitis or skeletal TB of the spine
• Has been isolated from TB patients in both immunocompetent • Grave form of tuberculosis caused by the invasion of M.
and immunocompromised individuals tuberculosis into the spinal vertebrae
• Habitat: Humans rarely; small animals (e.g., voles and other wild
Miliary Tuberculosis
rodents)
• An extrapulmonary tuberculosis which refers to the speeding of
B. PATHOGENESIS many organs outside the pulmonary tree with AFB through
Tuberculosis hematogenous spread
• A disease of the respiratory tract that may mimic other diseases • Occurs shortly after primary pulmonary disease but can take
such as pneumonia, neoplasm or fungal infections place anywhere in the course of acute or chronic TB
• Chronic granulomatous infection which is transmitted by • Common sites of spread: spleen, liver, lungs, bone marrow,
inhalation of infected droplets by means of coughing, sneezing or kidney, adrenal glands and eyes
talking Multidrug-resistant Mycobacterium tuberculosis (MDR-TB)
• Signs and symptoms: low-grade fever, night sweats, fatigue, • Defined as without previous history of TB disease and resistance
anorexia, weight loss to at least isoniazid and rifampicin (anti-TB drugs)
• Reactivation occurs when there is an alteration or a diminution of • Usually acquired by spontaneous mutation as a result of the
the cellular immune system inappropriate use of antimicrobial agents to treat M. tuberculosis
• Clinical diagnosis: usually limited to detection of positive and the lack of patient compliance
tuberculin test using PPD • Types of MDR-TB
→ Primary MDR-TB
Tuberculin Test - defined as without previous history of TB disease and
• Detects patient’s cell-mediated immune response to the bacterial resistance to at least isoniazid and rifampicin (anti-TB
antigens in type IV hypersensitivity reaction drugs)
• Does not detect active disease from hypersensitivity resulting → Extensively drug resistant TB (XDR- TB)
from a previous infection or vaccination - defined as resistance to rifampcin +fluoroquinolone + at
• A reactive (positive) result indicates past exposure to M. leastone of three injectable second line anti-TB drugs
tuberculosis (aminoglycosides, amikacin, kanamycin, or
• Types of reagent: capreomycin)
→ Old tuberculin (OT)
• the original test reagent for tuberculin test III. NONTUBERCULOUS MYCOBACTERIA
• Prepared from 6-week old broth cultures, from which • Currently, has approximately 130 species
organisms were filtered and concentrated by steaming • Present in the environment and sometimes colonize the skin and
• Active component of the filtrate is a heat-stable protein respiratory and GIT of healthy individuals
→ Purified Protein Derivative (PPD) • Mode of transmission: trauma, inhalation of infectious aerosols
• Partially purified preparation of OT prepared by and ingestion
ammonium sulfate fractionation • Few disease are nosocomial or are acquired as an iatrogenic
• Product consists of a mixture of small tuberculoproteins infection
• The test reagent use for tuberculin skin testing
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• Other names used to designate the NTMs: anonymous, • Biochemical tests-
atypical, unclassified, unknown, tuberculoid, environmental, → (+) Tween 80 hydrolysis (rapid)
opportunistic, mycobactera other than tubercle bacili (MOTT) → (+) pyrazinamidase; strong nitrate reducer
• Runyon classification: slow growing NTMs (Runyon groups I to Mycobacterium marinum
III), and rapid growers (Runyon group IV)
• Causes diseases of the fish and has been isolated from aquarium
• Causative agent of “swimming pool granuloma” – red or blue red
Table 1. Non-tuberculous Mycobacteria (TNM)
subcutaneous nodule on the elbow, knee, toe ,finger
Natural reservoir: fresh water and salt water
Microscopy: moderate to long rods with cross-barring
Culture: smooth to rough and wrinkled blue colonies
(photochomogenic)
Biochemical tests:
(+) Tween 80 hydrolysis
(+)urease, pyrazinamidase
Mycobacterium ulcerans
• 3rd most common species
• Rare cause of Buruli ulcer- painless nodule under skin
after previous trauma
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3. 1% cetyl-pyridium chloride
To prolong the shelf-life of sputum, up to 8 days (ideal for
transport of specimen)
4. Zephiran-trisodium phosphate
• Decontamination-digestion reagent
• An effective decontaminant with little bactericidal effect
on tubercle bacilli
• Liquefies sputum rapidly but requires a long exposure
time to decontaminate the specimen
• Phosphate buffer- results in greater isolation of
mycobacteria
• Advantage: for specimens containing large numbers of
bacteria
5. N-acetyl- L- cysteine (NALC)- NaOH
Both a decontaminant and a digestion agent
NALC is also known as dithiothreitol; a digestion agent
D. ACID-FAST STAINS
E. CULTURE MEDIA
• Methods:
a. Ziehl-Neelsen/Hot Stain Procedure
b. Kinyoun stains/Cold Stain Procedure → Incubated at 35°C in the dark with 5% to 10% CO2 with
c. Auramine-rhodamine fluorochrome stains (more humidity
sensitive) 1. Tubed media
incubated at slanted position with the screw caps loose for
Primary Stain: Auramine-rhodamine 1 week to allow evaporation of excess fluid and entry of
Decolorizer: Acid Alcohol CO2
Counter stain: Potassium permanganate 2. Plated media
**Examined at 250x to 400x magnification placed in CO2-permeable plastic bag or wrapped with
**Positive: bright, yellow-orange bacilli against dark background CO2-permeable tape
All positive fluorescent smears are confirmed with Examined weekly for growth
Ziehl-Neelsen on the same smear **Rapid Growers: 2-3 days
• Precautions during AFB Staining and Microscopy: **Pathogenic: 2-6 weeks
Smears should not come in contact with one another MALACHITE GREEN is inhibitory agent for nonmycobacteria
during staining ** M. Marinum or M. ulcerans: 25° to 30° C
Staining jars should not be used a. Egg-Based Media
Wipe the OIO before reading the next smear slide - composed of fresh whole eggs, potato flour, and glycerol,
with slight variations in defined salts, milk, and potato flour
Cause of False(+) AFS: Malachite green: suppress gram(+) bacteria
1. Changes in the cell wall Egg yolk: lipid source, promotes growth of mycobacteria
2. Insufficient decolorization Nonselective egg-based media: shelf life of 1 year
3. Laboratory contamination
4. Delayed processing and overgrowth of other Löwenstein-Jensen (L-J): most commonly used
bacteria medium; M. Genovense fails to grow
Malachite green (0.025%)
Gruft (Modification of LJ): +RNA; Malachite Green,
Cause of False(-) AFS: Penicillin and Nalidixic acid
1. Overzealous decontamination
2. Loss fro concentration technique b. American Thoracic Society
3. Organism obscured by a very thick smear - - Malachite green (0.02%)
4. Over-decolorization of the smear - Wallenstein Medium for isolation of M. avium complex
5. Poor counter staining
6. Lack of observer proficiency in reading stains c. Agar-based media
- Composed of defined salts, vitamins, cofactors, glycerol,
malachite green, and agar combined with an enrichment
consisting of oleic acid, bovine albumin, glucose, and
beef catalase
Middlebrook:
2% glycerol; enhances the growth of MAC
Middlebrook 7H10:
Malachite green (0.00025%)
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**Middlebrook 7H10 selective:
- carbenicillin (inhibition of pseudomonads), polymyxin
B, trimethoprim lactate, and amphotericin B
Middlebrook 7H11
- Malachite green (0.0001%), 0.1% casein hydrolysate:
isolation of isoniazid-resistant M. tuberculosis
**Middlebrook 7H11 supplemented with mycobactin J
for isolation of M. genovense
Mitchison’s selective 7H11
- casein hydrolysate, Carbenicillin,
Amphotericin B, Polymyxin
B, Trimethoprim lactate
Dubos Oleic Acid Albumin
Note: Good for AST although Middlebrook 7H10 is
preferred
3. Liquid media
a. BACTEC128 medium(MB7H12) and BACTEC 13A
(MB7H13)
Growth enhancer:
polyoxyethylene stearate
14C-labeled substrate (palmitic acid): metabolized by
mycobacteria, liberating radioactive CO2 (14CO2)à
detected by BACTEC 460TB
Growth indicator: release of CO2
- M. tuberculosis = 9 to 14 days;
- NTM = <7 days
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V. REVIEW QUESTIONS 7. There are millions of cases of leprosy (Hansen’s disease)
worldwide,but predominately in Asia and Africa. The clinical
1. A 34-year-old immigrant from Africa has patchy areas of skin spectrum of Hansen’s disease is best characterized by
anesthesia and hypopigmentation on his upper extremities. Nerve a. Immunologic anergy
biopsy evaluated under light microscopy shows many bacteria b. Chronic pneumonitis
invading Schwann cells. This patient's disease is most likely caused c. Peripheral neuritis
by: d. Bacilli in lesions that digest tissues
a. Borrelia burgdorferi e. Erythematous lesions resembling concentric circles
b. Treponema pallidium 8. Pathogenic mechanisms involved in tuberculosis can be
c. Corynebacteria diphtheriae primarily attributed to which of the following?
a. Toxin production by the mycobacteria
d. Mycobacteria leprae
b. Specific cell adhesion sites
e. Campylobacter fetus c. Cell-mediated hypersensitivity
2. Bacteria isolated from the lung tissue of a 32-year-old d. Humoral immunity
Caucasian male fail to decolorize with hydrochloric acid and e. Clogging of alveoli by large numbers of acid-fast
alcohol after staining carbolfuchsin. Which of the following cell mycobacteria
wall components is most likely responsible for this staining 9. Mycobacterium avium is a major opportunistic pathogen in AIDS
phenomenon? patients. M. avium from AIDS patients can be best characterized
a. N-acetylmuramic acid by which one of the following statements?
b. Teichoic acid a. The majority of M. avium isolates from AIDS patients
c. Lipopolysaccharide are nonpigmented
b. M. avium isolates from AIDS patients are of multiple
d. Mycolic acid serovars
e. Ergosterol. c. Few isolates from AIDS patients are acid-fast
3. A 52-year-old Asian male presents to your office with cough, d. Most isolates from AIDS patients are sensitive to
night sweats and occasional hemoptysis. Sputum cultures isoniazid and streptomycin
placed on a selective medium grow mycobacteria e. M. avium can be isolated from the blood of AIDS
microscopically observed to grow in parallel chains ("serpentine patients
cords"). This observed bacterial growth pattern most strongly VI.REFERENCES
correlates with:
• Dean Capili’s Lecture
a. Acid-fastness
b. Growth rates
c. Virulence
d. Pigmentation
e. Survival in macrophages
4. The treatment of tuberculosis
a. is initiated with a single "first-line" drug.
b. is initiated after the results of sensitivity testing is
available.
c. is most effective in patients with chronic or arrested
tubercles.
d. may last 2 to 3 weeks.
e. should be directly observed whenever possible.
5. A homeless man who is known to be HIV positive unexpectedly
dies in a dormitory of a congregate nighttime shelter. A
roommate states that during the night, he complained of periods
of shaking chills and fever and appeared to be coughing up
blood. An acid-fast stain slide of tissue from the lungs is shown
in the photograph. Which statement best describes the disease
process that is visible in the stained slide?
a. Cytoplasmic inclusions associated with Chlamydia
b. Legionella within alveoli indicating atypical pneumonia
c. Mycobacteria overwhelming alveolar macrophages
d. Pseudomonas microcolonies within lung parenchyma
e. Signs of consolidation linked to typical pneumonia.
6. Which of the Following is GOLD STANDARD for active TB test?
a. Sputum smear for acid-fast bacilli
b. Sputum culture
c. Nucleic acid amplification test
d. Chest X-ray
e. Tuberculin skin test
f. Interferon gamma release assay (IGRA)
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