Lab Manual BIO320 - Part 2 (F2F)
Lab Manual BIO320 - Part 2 (F2F)
Lab Manual BIO320 - Part 2 (F2F)
BIO 320
INTRODUCTION TO BIOLOGICAL
DIVERSITY
Manual : Laboratory Session 3, 4 & 5
(PART 2)
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Introduction to Biological Diversity (BIO320)/ AS120 / March - August 2022
PRACTICAL 3 : FUNGI
Objectives
Introduction
As you walk in the woods following a warm rain, you are likely to met by a vast assemblage of
colorful fungi. Some of them grow on dead or diseased trees, some on the surface of the soil,
others in pools of water. Some are edible, some deadly poisonous.
Fungi (kingdom Fungi) are heterotrophic organism; that is , they are incapable of
producing their own food material. They secrete enzymes from their bodies that digest their
food externally. The digested materials are then absorbed into the body.
Depending on the relationship between the fungus and its food source, fungi can be
characterized in one of three ways:
i) Parasitic fungi (parasites) obtain their nutrients from the organic material of
another living organism, and in doing so adversely affect the food source, often causing
death.
ii) Saprotrophic fungi (saprobes) grow on nonliving organic (carbon-containing) matter.
Some are even mutualists.
iii) Mutualistic fungi (mutualists) form a partnership beneficial to both the fungus and its
host.
Fungi, along with the bacteria, are essential components of the ecosystem as
decomposers. These organisms recycle the products of life, making the products of death
available so that life may continue. Without them we would be hopelessly lost in our own
refuse. Fungi and fungal metabolism are responsible for some of the food products that enrich
our lives – the mushrooms of the field, the blue cheese of the dairy case, even the citric acid
used in making soft drinks.
The kingdom Fungi is divided into three separate phyla, based on structures formed
during sexual reproduction. Certain fungi do not reproduce sexually; hence they are considered
an informal “group”.
Materials
• Compound microscope
• Prepared slide of :
Procedure :
1. Obtain a prepared slide and observe the slide first with the low-power objectives of your
compound microscope.
2. Switch to the medium and high dry-objective to study all the specific structure that you
can identify.
3. Draw and label all the macroscopic appearance structures that you can see in the slide.
PRACTICAL 4 : PLANTAE
Objectives
i. describe the plant life cycle and the concept of the dominant generation.
ii. describe the life histories and related reproductive structures of seedless vascular
plant and seedless non-vascular plant.
iii. explain the distinguishing features of seedless vascular plant and seedless non-
vascular plant.
Introduction
Bryophytes are the most ancient members of the plant kingdom. Plants are autotrophic,
multicellular eukaryotes that appeared about 400 million years ago. They probably share
common ancestry with green algae because they both stored starch, share several major
pigments, have cellulose in their cell walls, and form cell plates during mitosis. However, plants
are unique among autotrophs because plants produce gametes in multicellular gametagia. A
plant zygote develops into an embryo within tissue that originally surrounded the egg. Also
diagnostic of plants is their life cycle that alternate between a gametophytic (haploid) generation
and a sporophytic (diploid) generation.
Materials
Procedure
Introduction
Seedless vascular plants include about 13,000 species , most of which are ferns (division
Pterophyta). The three other divisions include whisk ferns (division Psilophyta), club mosses
(division Lycophyta), and horsetails (division Sphenophyta). These seedless vascular plants
share features with bryophytes, including the same types of pigments, the basic life cycle, and
the storage of starch as their primary food reserve. However, during the early stages of vascular
plant evolution, internal conducting tissues (xylem and phloem) developed, true leaves evolved,
and roots that absorbed nutrients and water as well as anchor the plant developed. These
adaptations of vascular tissue enabled these newly evolved divisions to invade and dominate
drier habitats on land, especially in tropical habitats. In addition, gametophytes became
progressively smaller and more dependent on the sporophyte that protected them.
Ferns are the most common seedless vascular plants and share many of their
reproductive and vegetative features with bryophytes. The life cycle of ferns is dominated by
the sporophyte. This diploid sporophyte produces haploid spores by meiosis. Each spore
germinates and grows into independent gametophytes that produce gametes by mitosis. Eggs
are produced in archegonia, and sperm are produced in antheridia. Fertilization occurs and
zygote will grow into a new sporophyte to complete the sexual cycle. Fern leaves (fronds) and
their underground stems, called rhizomes, comprise the bulk of the sporophyte. During sexual
reproduction, the backside of the frond is dotted with sori, which are clusters of sporangia. In
these sporangia, meoisis occurs, and resulting haploid spores are shed to give rise to
gametophytes – each one being an inconspicuous, heart-shaped prothallus.
Materials
Procedure
Post-lab Questions
1. What function do you think the root-like rhizoids at the base of the plant perform?
2. Explain why water must be present for the bryophytes to complete the sexual portion of
their life cycle.
5. Where is the location of antheridium on fern gametophyte? How does the sperm from
antheridium fuses with the egg at archegonium?
Experiment 3 : Gymnosperm
Objectives
i. describe the features of seed plant life cycle and the concept of the dominant
generation.
ii. describe the life histories and related reproductive structures of gymnosperms and
angiosperms.
iii. explain the features that distinguish gymnosperms and angiosperms.
iv. relate and discuss the advantages of seed plants to dominate land and their
evolutionary adaptations on land.
Introduction
Gymnosperms (720 species in 65 genera) are ancient seed plants that include ginkgos (Division
Ginkgophyta), cycads (Division Cycadophyta), conifers (Division Coniferophyta), and
gnetophytes (Division Gnetophyta). The term gymnosperm derives from the Greek wood roots
gymnos, meaning “naked”, and sperma, meaning “seed”. They are naked-seeded plants meaning
that the ovule, which becomes a seed, is exposed on the sporophyte at pollination. Mature seed
are not enclosed in a fruit as are those of flowering plants. Gymnosperms are best known for
their characteristic cones, called strobili. These strobili display sporangia and their subsequently
developing ovules and pollens. Gymnosperms do not require water for sperm to swim to reach
the egg as do seedless plants. Instead, immense amount of windblown pollen are produced.
Most gymnosperm cones, including the familiar pine cone, are complex whorls of
leaflike, woody scales around a central axis. The smallest cones include those of the junipers
(Juniperus) which have flesh scales fused into a structure resembling a berry. The larger cones
may weigh 45 kg and are produced by cycads. In most gymnosperm species, the female
megastrobilus is larger and distinctive from the male microstrobilus.
Materials
Procedure
A ginkgo :
1. Examine a prepared slide of male strobilus of Ginkgo biloba. Identify the
microsporophyll, microsprorangium, and strobilus axis.
2. Examine a prepared slide of female strobilus of Ginkgo biloba. Identify the
megasporophyll, megasprorangium, and strobilus axis.
A cycad :
1. Examine a female cycad. Identify leaves, megasporophylls, megasporangia and
developing seeds.
2. The pollen cone bears on male cycad. Examine pollinate cone and identify
microsporophyll, microsporangia, and pollen grains.
Experiment 4 : Angiosperms
Introduction
Angiosperms are the most abundant, diverse, and widespread of all land plants. They are
successful because they are structurally diverse, have efficient vascular systems, share a variety
of mutualisms (especially with insects and fungi), and have short generation times. Flowering
plants are important to human because our world economy is overwhelmingly based on them.
Indeed, we eat and use vegetative structures (roots, stems and leaves) as well as reproductive
structure (flowers, seeds, and fruits). You will find that many of the vegetative structures are
quite similar to those of more ancient plants shown. The roots, stems, and leaves of flowering
plants function just as those of ferns and cone bearing plants. Flowers and fruits, however are
unique adaptations of angiosperms. Biologists believe that the extraordinary adaptiveness of
these structures has led to the proliferation of the incredible diversity found among flowering
plants.
Materials
Procedure
Roots :
1. Obtain a root of dicots and monocots for morphology and anatomy study.
2. Look for the root systems of representative dicot and monocot. Can you give the
function of these roots?
3. Cross section of dicot root shows the central stele is surrounded by a thick cortex and
epidermis. Identify the following: epidermis, cortex, parenchyma cells, starch grains,
pericycle, endodermis, phloem, and xylem.
4. Cross section of monocot root shows this root has a vascular cylinder of xylem and
phloem that surrounds a central pith. Identify the following: epidermis, cortex,
endodermis, Casparian strip, pith, phloem, and xylem.
5. Obtain a prepared slide of the roots for some other species and distinguish their
structure.
Stems :
1. Study the longitudinal section of shoot tip of representative dicot and monocot (fresh
prepared slide or prepared slide). Identify the following: leaf, leaf primordium, apical
meristem, ground meristem, axillary bud, vascular bundle, and pith.
2. Obtain a dicot and monocot and make a cross section of the stems and examine the
arrangement of vascular bundles. Compare the anatomy between this dicot and
monocot.
3. For both type of plants, identify: epidermis, cortex, phloem, xylem, cambium, pith, and
vascular bundle.
Leaves :
1. Look for fresh specimen provided in lab. Flowering plants show a variety of
morphology to identify, such as, leaf arrangements and leaf venation.
2. Using fresh prepared slide or prepared slide of some flowering plants, study the
structure of the leaves. Notice that the leaves have common features: cuticle, air space,
lower epidermis, upper epidermis, palisade mesophyll, spongy mesophyll, and vascular
bundle.
Post-lab Questions
5. Contrast between dicots and monocots, the two classes of flowering plants.
PRACTICAL 5 : ANIMALIA
Topic 1 : Sponges and Cnidarians
Objectives
Introduction
Sponges of phylum Porifera and cnidarians of phylum Cnidaria are multicellular heterotrophs
and members of kingdom Animalia. Their bodies and body cavity are simple and they lack the
complex behavior and sensory capabilities of many higher animals. However, their diversity
and persistence through time demonstrate the elegance and efficiency of their simple design.
Phylum Porifera (sponges) are the simplest of the major animal phyla and comprise
10,000 species. Most sponges live in the ocean, but a few encrust rocks and sticks in freshwater.
Sponges lack tissues and organs and are typically asymmetrical assemblages of cells. Bodies of
asymmetrical organisms have no symmetry or pattern such as left and right halves or anterior
and posterior regions. Sponge cells are so loosely assembled that if a sponge is forced through a
fine mesh, the disassociated cells will survive. Even more remarkably, the disassociated cells
can reassemble as a functioning organism.
Phylum Cnidaria (also called Coelenterates) includes class Hydrozoa (hydras), class
Scyphozoa (jellyfish), and class Anthozoa (anemones and corals). Cnidarians are almost all
marine carnivores. Their bodies are radially symmetrical and more complex than the sponges.
Radial symmetry describes a body form with repetitive body areas arranged in a circle around a
central point such as the pieces of a pie. The body wall has two cellular layers, an ectodermis on
the outside and an endodermis (sometimes called the gastrodermis) lining the gastrovascular
cavity. A gelatinous mesoglea separates the two true body layers. Cells of cnidarians are
organized into true tissues (nervous, muscular, and reproductive) but not organs. Cnidarians
have two basic body plans: polyps and medusae. The classes of cnidarians are distinguished
primarily by the relative dominance of the polyp stage or the medusa stage in the life cycle.
Many cnidarians occur only as polyps, others only as medusae, and still others alternate
between these two forms. This alternation is a form of polymorphism, which means "many
forms." The life cycle of many cnidarians is characterized by alternation between polyp and
medusa.
Materials
Procedure
Scypha (Grantia) :
1. Examine the general morphology of the preserved specimen of Scypa. Identify the
osculum, and spicules. Note the pores in the body wall.
2. Examine a prepared slide of Scypa provided to you. Identify their structures and
functions, then draw and labels your observations.
Spongilla :
1. Examine the preserved specimen of Spongilla. Look for the morphology of this species.
How do they look like?
2. Examine a prepared slide of Spongilla provided to you. Identify their structures and
functions, then draw and labels your observations.
Experiment 2 : Cnidarians
Post-lab Questions
3. Describe the means by which the cnidarians seize and eat faster organisms.
4. None of the sponges or cnidarians moves rapidly. What necessary features are both of
these phyla lacking in order to have a more mobile lifestyle?
Figure 6.2 (A) A polyp and (B) medusae stage for Cnidaria. (C) Body wall of a hydra
(longitudinal section).
Objectives
i. explain the basic body plan of some members of phyla Platyhelminthes, Nematoda,
and Rotifera.
ii. identify structures and functions of representative of these groups.
iii. state characteristics of members of these groups.
iv. explain the difference between acoelomate and pseudocoelomate, and know which
phyla associated with each.
Introduction
Flatworms have soft, wormlike bodies and are acoelomates (lack of body cavity
between the gut and body wall). They represent an important evolutionary transition because
they are the simplest forms to exhibit an organ system level of organization and cephalization (a
definite head with sense organ). Although they are definite organs, the digestive system is still
of the gastrovascular type, incomplete with a mouth and no anus. Flatworms are grouped in
three classes: class Turbellaria: Planarians, class Trematoda: Fluke, and class Cestoda:
Tapeworms.
Roundworms are pseudocoelomates (have a false body cavity or pseudocoel). They have
a complete gut with both a mouth and an anus. Together, the pseudocoel and the complete
digestive system comprise a tube-within-a-tube arrangement. Roundworms have slender,
cylindrical bodies that taper at both ends. A complex cuticle of protein covers them. Free-living
roundworms are Rhabditus and Turbatrix, Ascaris, and Trichinella.
Rotifers are pseudocoelomates, microscopic animals, easily found in rain gutters and
spouts, and in the slimy material around the bases of building. Their body wall is very thin,
usually transparent and covered by a cuticle composed of protein. They are dioecious; however,
many species have no males, and the eggs develop parthenogenetically.
Materials
Procedure
Post-lab Questions
2. What are the advantages of a roundworm’s digestive system having two opening?
Figure 7.1 Anatomy of a planarian. (A) Dorsal view of digestive and nervous system. (B)
Cross section and (C) longitudinal section of planarian taken through the
pharynx region. (D) Lateral view. (E) Dorsal view. (F) Sagittal view of
reproductive system.
Figure 7.2 Structure and life cycle of the beef tapeworm, Taenia saginatus.
Figure 7.3 (A) Lateral view of female nematodes. (B) Lateral view of male nematodes. (C)
and (D) Cross section of the body.
Figure 7.4 Rotifers anatomy. (A) Dorsal view. (B) Lateral view. (C) Cross section.
Objectives
Introduction
Molluscs are soft bodied animals having an internal or external shell. Included in the phylum
are snails, oysters, slugs, clams, octopuses, and squids. Most mollusks are bilaterally
symmetrical, absence of segmentation, and the circulatory system is open. They are
characterized by having three main body regions: a muscular foot, which is the sensory and
locomotive part of the body; a visceral mass containing the excretory, digestive, and
circulatory organs; and the mantle, which secretes the shells. The gills, which function in
respiration, are located inside the mantle.
Materials
Procedure
6. Cut into the foot to find the stomach and digestive tract.
7. Trace the flow of water and food through your dissecting specimen.
8. When you complete your observations, disposed of the preserved tissue and shells in
appropriate containers.
Post-lab Questions:
4. The four major classes of mollusks are Polyplacophora, Gastropoda, Bivalvia, and
Cephalopoda. With examples, describe the main characteristics of each class.
(a) (b)
Introduction
Annelids include earthworms, leeches, and many less familiar marine and freshwater species.
The most distinctive characteristic of this phylum is segmentation. The body is divided into
repetitive segments (sometimes called metameres) arranged on a longitudinal axis and divided
by septa. Each segment contains parts of the circulatory, digestive, nervous, and excretory
system. The circulatory system of annelids is closed. Annelids also have setae, which are small,
bristle-like appendages often occurring in pairs on lateral and ventral surfaces. The degree of
setae development is distinctive for each of the three classes of annelids: Class Oligochaeta,
Class Polychaeta, and Class Hirudinea
Materials
Procedure
Post-lab Questions:
2. Leeches are highly specialized annelids, which have anterior and posterior suckers.
Explain the function of these structures.
3. Why the oligochetes and hirudinea are called ‘hermaphroditic’? What is the difference
between their reproductive?
4. The three major lasses of annelids are Oligochaeta, Polychaeta, and Hirudinea. With
examples, describe the main characteristics of each Class.
Introduction
The phylum Arthropoda is the largest of all animal phyla. The arthropods are characterized by
their rigid chitinous body covering, called an exoskeleton. The body is segmented externally
and internally to varying degrees, depending on the species, and the appendages are jointed and
highly modified for a large variety of functions.
The classification of Arthropoda is quite complex because of its large number of species
and the tremendous diversity in form among its members. It is divided into three subphyla,
which are subdivided into classes. Some of the major classes included Class Arachnida, Class
Crustacea, Class Insecta, Class Chilopoda and Class Diplopoda.
Materials
Procedure
Post-lab Questions:
1. Complete the table below to compare the characteristics of some classes of Arthropods.
Number of legs
Arrangement of legs
Segmentation
Number of antennae
2. Other classes of Arthropods are Class Chilopoda (Centipedes) and Class Diplopoda
(Millipedes). Explain the common habitat for each Class.
3. With examples, describe the main characteristics of class Chilopoda and Diplopoda.
Objectives
Introduction
Echinoderms consist of mostly marine, bottom-dwelling animals commonly known as sea stars,
sea urchins, sand dollars, sea cucumbers and sea lilies. The phylum is so named because of the
presence of spiny plates (calcareous ossicles), which form a dermal skeleton. Echinoderms are
typically radially symmetrical, and they have true coeloms arising as outpocketings from
embryonic mesoderm of the gut. A unique feature of the echinoderms is a derivative of the
coelom known as the water vascular system, a system of a tube that is filled with a watery fluid.
This system functions in movement, attachment, respiration, excretion, food handling, and
sensory perception.
Materials
Procedure
The tube foot, along with the skin gills, functions in movement, respiration and
excretion.
5. Examine a prepared slide of an arm (c.s) and identify the coelom, digestive gland,
dermal endoskeletal plates, tube feet and gonad.
6. Examine the prepared slide of bipinnaria larvae, and identify the mouth, anus, intestine,
esophagus and stomach. Draw and label your observation.
Figure 9.1 Asterias (a) External features of the oral and aboral surfaces, and (b) spines,
pedicellariae and skin gills.
Introduction
Materials
Procedure
Post-lab Questions:
1. Distinguish some of the features between sea star and sea urchin.
2. Sea cucumber lack arms, spines and long tube feet. How do they move?
(a)
(b)
(c)
Figure 9.2 External anatomy of the (a) adult tunicate; (b) larval tunicate; and (c) lancelet.
Topic 7 : Vertebrates
Objectives
Introduction
The Vertebrata is by far the largest and most important of the chordate subphyla. The
vertebrates are characterized by an endoskeleton that includes a vertebral column, or backbone,
composed of a series of vertebrae. Vertebral column replace the notochord in adults and
surround the dorsal nerve cord. Vertebrates also have a distinct head. There are seven classes of
living vertebrates, three of them fishes and four of them terrestrial tetrapods. The seven classes
of vertebrates are Agnatha, Chondrichthyes, Osteichthyes, Amphibia, Reptilia, Aves and
Mamalia.
Class Agnatha include the hagfishes and lampreys. They are also called cyclostomes
(round mouth) and without jaws. All hagfishes are marine, whereas lampreys inhabit both
marine and freshwater.
Class Chondrichthyes include sharks, skates and rays. They are abundant in oceans as
predators and scavengers. This class is characterized by skeletons that lack bones but are instead
made of a softer, more flexible material, called cartilage. The skin is covered by small, pointed
scales made of plates of dentine covered by enamel, which structurally resemble vertebrate
teeth. The anterior gill arches are modified into jaws.
Class Osteichthyes, a bony fish, are the most diverse class of vertebrates (about 20 000
species). Advanced features of bony fish include a bony endoskeleton, modified gill arches, and
internal air bladders for balance and buoyancy.
Class Amphibia include toads, frogs, and salamander. Most amphibian adults are
terrestrial, but they lay eggs in water. The eggs are fertilized externally and each hatches into an
aquatic larval stage called a tadpole. Tadpoles undergo a dramatic metamorphosis of body
shapes as they become adults.
Class Reptilia include some of the most interesting and diverse chordates, such as the
turtles, snakes, lizards, crocodiles, and alligators. They are ectothermic, most covered with
scales or bony plates, and they respire by means of lungs. They are the first vertebrates to
evolve that adapted to living in dry places, the dry skin and scales retarding moisture loss from
the body and allowing the animal to occupy rough land surfaces.
Class Aves (birds) most easily recognized because they have feathers and are capable of
flying. Represent on the feet are with scales, reminiscent of their reptilian heritage. They are
endothermic vertebrates, capable of maintaining relatively high core-body temperatures
physiologically.
Class Mammalia, often called the “highest” animals, include such as rodents, monkeys,
bats, horses, whales, cows, deer, and human being. All are covered to varying degrees with hair
and are warm-blooded. They are called mammals because the young are nourished by milk from
the mammary glands of the female. They live in all kinds of habitat, able to move into these
niches and survive, because of the wide diversity in their morphological, physiological, and
behavioral features.
Materials
Procedure
Post-lab Questions
1. Define the terms internal fertilization and external fertilization. What is the adaptive
significance of internal fertilization?
2. What is the advantage of retaining the embryo in the uterus during its development?
3. What advantage is there in nourishin the young with milk from the mammary gland
rather than with the food in the yolk of a reptilian egg.
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