TRANSKRIPSI
TRANSKRIPSI
TRANSKRIPSI
TRANSKRIPSI
Termination in bacteria
• There are two major termination strategies found in bacteria: Rho-
dependent and Rho-independent.
• In Rho-dependent termination, the RNA contains a binding site
for a protein called Rho factor. Rho factor binds to this sequence and
starts "climbing" up the transcript towards RNA polymerase.
• When it catches up with the polymerase at the transcription bubble,
Rho pulls the RNA transcript and the template DNA strand apart,
releasing the RNA molecule and ending transcription.
• Another sequence found later in the DNA, called the transcription stop
point, causes RNA polymerase to pause and thus helps Rho catch up.
RHO-INDEPENDENT TERMINATION
• Rho-independent termination depends on specific sequences in the
DNA template strand.
• As the RNA polymerase approaches the end of the gene being
transcribed, it hits a region rich in C and G nucleotides.
• The RNA transcribed from this region folds back on itself, and the
complementary C and G nucleotides bind together. The result is a stable
hairpin that causes the polymerase to stall.
• In a terminator, the hairpin is followed by a stretch of U nucleotides in
the RNA, which match up with A nucleotides in the template DNA.
• The complementary U-A region of the RNA transcript forms only a
weak interaction with the template DNA.
• This, coupled with the stalled polymerase, produces enough instability
for the enzyme to fall off and liberate the new RNA transcript.