GIS and Remote Sensing For Mangroves Mapping and Monitoring
GIS and Remote Sensing For Mangroves Mapping and Monitoring
GIS and Remote Sensing For Mangroves Mapping and Monitoring
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Abstract
Malaysia is one of the few South East Asian counties with large tracts of man-
groves. They provide ecosystem goods and services to the environment and the
surroundings regarding shoreline stabilization, storm protection, water quality
maintenance, micro-climate stabilization, recreation, tourism, fishing and supply
of various forest products. Despite extensive distribution of the mangroves, threats
posed by different land use activities are inevitable. Therefore, knowledge on man-
groves distribution and change is importance for effective management and making
protection policies. Although remote sensing (RS) and geographic information sys-
tem (GIS) has been widely used to characterize and monitor mangroves change over
a range of spatial and temporal scales, studies on mangroves change in Malaysia is
lacking. Effective mangrove management is vital via acquiring knowledge on forest
distribution and changes to establish protection policies. This chapter will elaborate
technically how GIS and RS were utilized to identify, map, and monitor changes
of mangroves ecosystem in Malaysia. It also highlights how GIS can enhance the
current governance and regulations related to forestry in Malaysia.
1. Introduction
Mangroves act as frontiers that protect the coastal land against destruction of
ocean waves, tsunamis and storms. Mangroves also provide habitat for various
aquatic life forms and function as natural filter, which improves the quality of
water. Mangroves also play important roles as a significant carbon sink in coastal
environment. It is interesting fact that despite only 0.05% of plant biomass stored
in the ocean and coastal areas out of the total plant biomass on land, it can absorb
a comparable amount of carbon every year. A study demonstrated that primary
productivity in mangroves is higher than other types of forests. Biomass carbon in
mangroves stands is among the highest in the tropics. Mangroves can store up to four
times more carbon (C) as compared to other tropical forests around the world [1].
A mangroves ecosystem has an ability to absorb carbon dioxide (CO2) and store
carbon 40% more than the dry land forest ecosystem. Due to this ability, the total
carbon deposited in a square kilometer of mangrove ecosystem is 50 times faster
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than those of the same area in a dryland tropical forest ecosystem. The absorbed
CO2 is stored not only in the plants, but in layers of soils underneath [2]. Therefore,
mangroves are playing a crucial role in global carbon budgets and thus mitigating
climate change.
However, despite being realized the importance of mangroves in the global
carbon cycle and climate change, the extents of mangroves have inevitably declined
since the last few decades. Unfortunately, the declines have been resulting mainly
from human activities such as aquaculture expansion, coastal development, and
over-harvesting [3]. Malaysia is one of the countries in South East Asia that has
among the largest extents of mangroves. Despite its extensive distribution of man-
grove ecosystem, this forest is inevitable from threats by various land use activities.
The total area of mangrove forest was approximately 2% (650,000 ha) of the total
land area in Malaysia in the 1990s [4].
However, the mangroves in Malaysia have been gradually diminishing, where
the total area of mangrove forest has reduced to approximately 580,000 ha in
the last decade [5]. Other reports indicated that the extent of mangrove areas in
Malaysia is decreasing, from about 700,000 ha in 1975 to 572,000 ha in 2000 due
to the intensive harvesting and natural wave actions [6, 7]. Globally, mangroves
have also declined from 18.8 million ha to 15.6 million ha between years 1980 and
2005 [8]. Overall Asia was the largest net loss of mangroves since 1980, with about
1.9 million ha have loss, mainly due to conversion of mangrove forest to other land
uses. However, there has been a slowdown in the annual rate of mangrove loss, from
about 187,000 ha in the 1980s to 102,000 ha between 2000 and 2005. This reflects an
increased awareness and an improved management system in mangroves ecosystem.
Major threats towards the mangroves that are triggered by human activities can
generalized into six [9], which are (i) conversion to other uses, (ii) overharvest-
ing, (iii) overfishing, (iv) pollution, (v) sedimentation and (vi) alteration of flow
regimes. Direct conversion to other uses was identified as the major factor that
changes the world’s mangroves. This includes conversions to (i) urban and industrial
areas, (ii) aquaculture, and (iii) agriculture. Additionally, natural phenomena such as
coastal erosion, storm and lightning strikes are also the natural impacts that kill man-
groves in Peninsular Malaysia, including the tragic tsunami on 24 December 2004.
Despite widespread concern and numerous case studies describing local issues
and challenges, comprehensive information on the global extent of mangroves
and trends of deforestation is largely lacking [10]. It is because determining the
precise area of mangroves is not always easy. Measurement is affected by varying
definitions of what constitutes mangroves; inclusion only on the basis of official
recognition such as gazetted forest reserves; scattered or sparse areas considered too
inconsequential for inclusion; and the accuracy of the returns made by the respon-
sible authorities. Each of these can create uncertainty and produce significant
variation depending on the timing and purpose of the assessment exercise.
Recently, RS satellites have been widely used for mangrove monitoring. They
greatest reasons why is because the RS can (i) acquire information over large areas,
(ii) produce repeated measurement over a place, and (iii) make full use of electro-
magnetic spectrum for quantitative and qualitative measurements over mangroves
[11]. Satellites also provide information on spatial distribution and temporal
changes of mangrove forests. When this information is gathered over decades, the
mangrove monitoring over the large area will become possible. There are studies
on the assessment of mangroves changes and identifying threats, for example in
Terengganu [12], Selangor [13], and Peninsular Malaysia [14]. However, these stud-
ies are unable to represent the holistic conditions at national level. Therefore, this
study was conducted to provide the information pertaining status of mangroves and
changes that occurred since the last three decades.
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GIS and Remote Sensing for Mangroves Mapping and Monitoring
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The study area covers the entire mangroves ecosystem in Malaysia, which can be
divided into two regions, which are Peninsular Malaysia and East Malaysia (i.e. Malay
Borneo). Forests in these regions can be divided into three major types, which are
inland dipterocarps (dryland), peat swamp, mangrove forests (wetlands). The man-
grove forest is a unique ecosystem and the second largest wetland forest type after
the peat swamp forest. Ecologically based on elevation the mangrove forest is located
at the lowest elevation, which is equivalent to the sea level. The mangrove forest is
generally found along sheltered coasts where it grows abundantly in saline soil and
brackish water dominated mainly by trees from the Rhizophoraceae family. Mangroves
are fringing the coastlines (up to 5 km landward) and major estuaries of the regions
and they reside on wetlands ecosystem of not more than 20 m land altitude.
Cloud cover is inevitable on the images acquired by the satellites. However, cloud
patching process can eliminate the cloud covers that appear on a single-date observa-
tion data. Images of particular scenes that were acquired on different dates were
used for cloud patching process as shown in Figure 2. F_mask algorithm was used to
perform this process [15, 16]. Seamless mosaics product (i.e. images without cloud
covers and atmospherically corrected) were used as input for subsequent processes.
Figure 1.
Landsat scenes that were used for the classification. Numbers within the scene boundary indicates path/row ID
of Landsat satellites.
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Figure 2.
Cloud detection and removal process. Individual Landsat scene that was captured on 26 January 2017 (a) was
merged with that captured on 14 June 2017 (b), where both produced a cloud-free images for the year 2017 (c).
1. Step 1: to determine the significance of the mth variable. In the left out cases
for the kth tree, randomly permute all values of the mth variable. Put these new
covariate values down the tree and get classifications.
2. Steps 2 and 3: for the nth case in the data, its margin at the end of a run is the
proportion of votes for its true class minus the maximum of the proportion
of votes for each of the other classes. The 2nd measure of importance of the
mth variable is the average lowering of the margin across all cases when the
mth variable is randomly permuted as in Step 1. Step 3 then count the margins
that was shrank.
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Table 1.
Vegetation indices that were used derived from the images.
decision tree. At every split, one of the mth variables is used to form the split
and there is a resulting decrease in the Gini. The sum of all will decrease the
forest due to a given variable, normalized by the number of trees.
All images have been classified to distinguish mangroves from the other land
uses. The classification results were transformed into vector shapefile for further
refinement and editing. The accuracy of the classification results were assessed
by using a number of ground truth points. The GIS platform was used to carry
out post-classification analysis. Post-classification analysis is usually used for
quantifying changes of land uses. Changes of mangroves were identified from the
conversions of mangroves to other landuse classes, which are (i) urban, settlement,
and industrial areas, (ii) agricultural, (iii) aquaculture activities, and (iv) coastal
erosion.
(Ct1 − Ct2)
∆ C = ________
t −t
(1)
( 2 1)
where ∆C is changes in carbon stock (Mg C yr−1), Ct1 and Ct2 (Mg C) is carbon
stock at time t1 and t2 (year), respectively. In this case, the Ct1 and Ct2 was quantified
from the changes analysis that have been carried out earlier this study.
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F mask algorithm successfully removed almost 100% of cloud covers and their
shadows on the images. The algorithm also managed to detect thin, low temperature
clouds in the high altitude by thermal sensors onboard the Landsat TM, ETM+ and
OLI. The algorithm somehow failed to detect small scattering clouds that occurred
in small patches on the images. Nevertheless, the algorithm has facilitated the
cloud removal process and make the mangroves mapping and monitoring work at
landscape-level practical. Figure 2 shows a portion of mangroves on two different
images that were captured on different dates with clouds. These images were used to
produce seamless mosaic of images without cloud covers.
The study indicated that the suitable spectral bands for species discrimination
varied with scale. However, near-infrared (700–1327 nm) bands were consistently
important spectrum across all scales and the visible bands (437–700 nm) were more
important at pixel and crown scales. By using the RandomForest algorithm, the
most important bands in the classification were represented by a mean decrease
Gini values. The most important bands in mangroves discrimination, from most to
least, are; MidIR, NIR-2, NIR, Green, Blue, Red. Spectral profile of the images also
showed that the NIR channels separate the mangroves from the other land covers
very well (Figure 3). On the other hands, the vegetation indices that were used in
this study played similar important role in mangroves classification.
The image classification approach that has been applied in this study was found
to be effective only at large coverage of mangroves. The accuracy for all classifica-
tions were ranging from 83 to 91%, which were acceptable and reliable for monitor-
ing purpose. Mangroves are normally appear dark on any combination of spectral
bands of multispectral image. This is due to the natural ecosystem of mangroves,
which is covered by swamps and sometimes inundated by tidal water. The chloro-
phyll content of the mangrove leaves, which is higher than those of trees and crops,
tends to make them appear darker on satellite images [25], as depicted in Figure 4.
Each mangrove species has a unique configuration of trunks, prop roots and
Figure 3.
Spectral profiles of several land covers extracted from the images. Channel 1 through 6 on the y-axis are blue,
green, red, NIR, NIR-2 and MidIR, respectively.
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Figure 4.
Images showing (a) combination of bands 5, 6 and 4 of Landsat-8 OLI and (b) combination of vegetation
indices, NDVI, GARI and NDII. These images were selected for the classification process.
The classification results were further edited to refine the shapes and accuracy.
This process was conducted manually on the vector shapefile by visual interpre-
tation on GIS platform. Finally the spatial distribution of the mangroves were
mapped properly (Figure 7). The mangroves in Malaysia were mostly found in
Sabah (60%), followed by Sarawak (22%) and Peninsular Malaysia (18%). Table 2
summarizes the total extents of mangroves in the respective regions that have been
produced from the classification. It is notable that the total extents of mangroves
have been decreasing throughout the monitoring period. Figure 8 shows spatially
explicit map of mangroves distribution in Malaysia as of year 2017. Mangroves are
found mainly along the west coast of Peninsular Malaysia, west coast of Sarawak
and the east coast of Sabah.
Table 3 reports the changes of mangroves that occurred over the 27 years of
monitoring period. The total loss of mangroves was about 21,274 ha where major-
ity of the mangroves loss were outside the Permanent Forest Reserve or within the
Figure 5.
Roots and successive stands of Rhizophora apiculata in a common mature mangrove forest.
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Figure 6.
Mangroves as they appeared on Landsat-8 image. The dark green areas represent the mangrove areas. The
image classification process, either automated or manual digitizing, is usually easier for mangrove areas than
for other vegetation. The image is displayed using a combination of bands 543 (RGB) over the Kapar area
in Klang, Selangor. The central bottom is Klang port complex and the bottom left is Pulau Klang, which is
predominantly covered by mangroves.
Figure 7.
Mangroves appear dark green on the original image (left) and the classified mangroves, indicated as red
polygons (right).
stateland areas. These areas are actually the land bank for the states developments,
which are principally included in the State’s Structural Planning. Example of
mangroves changes detected from the multi-temporal mapping process is shown in
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Table 2.
Extents of mangroves in Malaysia.
Figure 8.
Distribution of mangroves in Malaysia over the year 2017.
Table 3.
Mangroves deforestation in Malaysia between years 1990 and 2017.
Figure 9. From this information, it can be concluded that the annual decrease rate
of mangroves was about 788 ha per year or about 0.13% per annum since year 1990.
Major factors that contributed to these changes have been identified as: (i) direct
conversion to other land uses (Figure 10), predominantly for commercial-scale
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Figure 9.
Changes of mangroves that occurred between 1990 and 2017 overlaid on GIS platform.
agriculture (Figure 11) and aquaculture (Figure 12), and (ii) coastal erosion
(Figure 13). The other factors such as overharvesting and pollution affect the
mangroves to a lesser degree.
Although coastal erosion was identified as one of the factors of mangroves loss,
there were some accretions occurred in some other places. Erosion and accretion is a
dynamic process and takes place along the coastlines and major estuaries, where sus-
pended sediments are likely to settle. These phenomena also lead to species succession
when the existing plant species die due to unsuitable soil and new species emerge.
Besides, mangrove roots can act as wave breaker and promote flocculation and sedi-
mentation, eventually forming mudflats that allow positive accretion (Figure 14).
Coastal erosion occurs when the waves hit perpendicular to the coastlines and when
the rapid flow of sea currents wash away the sand or soil particles. The frequency and
height of waves hitting the coastlines contribute to the harshness of coastal erosion.
Thus, the presence of mangroves can reduce the coastal erosion significantly. This
condition is obvious particularly in the areas facing the sea [26, 27].
Figure 10.
Land developments on mangroves. Reddish color represents newly opened areas for development purposes that
were cleared from the original mangroves areas (dark green color).
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Figure 11.
Expansion of oil palm plantation on mangroves. Reddish color represents newly opened plantations from the
original mangroves areas (dark green color). The bright green represents existing plantations.
Figure 12.
Expansion of aquaculture industries on mangroves. Dark blue patches represents newly opened aquaculture
ponds from the original mangroves areas (dark green color).
Figure 13.
Shoreline changes that resulted from coastal erosion along the coast of south Pontian, Johor. The study indicated
that 14.2 km stretches have been facing serious coastal erosion within the last two decades with the rate of
erosion ranging from 3.2 to 12.5 m per year.
A study has indicated that the average C stock (aboveground and belowground)
in mangroves in Malaysia is about 181 Mg C ha−1 [28]. The extents of mangroves loss
for each epoch were multiplied by this average carbon stocks. The study demon-
strated that the total loss of carbon due to the loss of mangroves was about 2.6 million
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Figure 14.
Positive accretion of mangroves at estuaries. The new formations at the river mouths were colonized by
mangroves trees forming a naturally generated forest.
Table 4.
CO2 emission resulted from mangroves loss between years 1990 and 2017.
Mg C. Subsequently, this has led to the CO2 emission at about 14.2 million Mg CO2,
with an average of about 0.5 million Mg CO2 emission per year, along the monitoring
period. Table 4 summarizes the impact of mangroves loss in terms of CO2 emission.
Although the figures are generally crude, the study provided some ideas for further
studies, especially which related to carbon cycles and climate change.
4. Conclusion
This study has successfully assessed the current state of mangroves and deter-
mined the rate of mangroves loss in Malaysia since the last decade. Total mangroves
in Malaysia has decreased from 650,311 ha in 1990 to 629,038 ha in 2017. Total defor-
estation was accounted at 21,274 ha or 3.3% with the annual rate of deforestation of
788 ha yr−1 or 0.13% yr−1, between 1990 and 2017. The study also quantified the C
stock changes and estimated CO2 emission due to the loss of mangroves in Malaysia.
Total emission caused by the mangroves deforestation was accounted at about 14
million Mg CO2 with annual emission rate of around 0.5 million Mg CO2 yr−1.
The study found that the Landsat-based mapping and monitoring of mangroves
was very practical. It provides a reliable information on mangroves distribution, both
qualitatively and quantitatively. Landsat missions provide a very useful RS tool for
monitoring changes of mangroves over time. The study suggests that appropriate
actions should be taken by the Government of Malaysia to protect the mangroves and
keep their ecosystem intact forever. The most effective way to conserve the mangroves
is to gazette the remaining stateland forest as Permanent Reserved Forests (PRFs).
These PRFs should then be maintained as amenity for current and future generations,
while contributing to the mitigation of climate change impacts at the local level. Any
development in PRFs should be prohibited or implemented with caution.
Overall, there is great potential in the application of Landsat-based data with
appropriate GIS technique for mapping and monitoring of mangroves in Malaysia.
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Although there are cloud covers problems on some of the images, this has not hin-
dered the assessment of mangroves at landscape and regional levels. The accuracy
and precision also vary depending on the objective of the application. However,
the ability to detect major changes in the ecosystem that can cause profound and
irreversible damage far outweighs a perfectly or highly accurate and precise RS
based method at this point.
Currently, Malaysia has reserved about 85% (~535,000 ha) out of the total areas
of mangroves as Permanent Forest Reserve and State/National Parks. The remaining
15% is under the state-lands and alienated lands. By far, the most effective way to
preserve these mangroves is through gazzeting into permanent forest reserves.
Acknowledgements
This work has been carried out under the Research and Development Committee
on Mangroves (JTRD) led by FRIM. Special thanks for the Forestry Department
Peninsular Malaysia (JPSM), Sabah Forestry Department (SFD), and Forest
Department Sarawak (FDS) for the supports on the ground data collection
activities.
Conflict of interest
Author details
© 2018 The Author(s). Licensee IntechOpen. This chapter is distributed under the terms
of the Creative Commons Attribution License (http://creativecommons.org/licenses/
by/3.0), which permits unrestricted use, distribution, and reproduction in any medium,
provided the original work is properly cited.
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