LT HHC
LT HHC
LT HHC
I. ISOMERS:
There are two types of isomers: constitutional isomer and stereoisomer.
The focus of the course is stereoisomer.
In stereoisomer, there are two types:
• Geometric isomer (cis trans)
• Isomer with chirality center (R, S)
II. Chirality:
Carbon has chirality only if it is connected to 4 different groups.
There is one chiral center since the C is connected to four different groups.
III. Cahn-Ingold-Prelog rule:
The priority depends on the molecular weight of the atoms that are connecting directly
to the carbon center. The higher the molecular weight, the higher priority the atom is.
Example: Br (80) > Cl (35.5) > T(3H) > D(2H) > H
In case the 1st direct atoms are the same, determine the order of atoms of the 2nd direct
atoms.
Example:
If there is double bond or triple bond, assume that it is connected to the atom twice or
three times.
Example:
1
This rule is applied for determining R,S as well as the Z,E structure:
For alkene:
Cis/trans is used when the comparing the relative position of two same groups.
Z/E may not always have similar result with cis/trans.
E but cis
IV. Representation of organic structure with chiral center:
1) Perspective formula:
CHIRAL CENTER must have perspective structure
2
TRADITIONAL METHOD:
Extend the line of the least prioritized group and look from the opposite direction. The
decreasing order of the remaining three functional groups will either be clockwise (R)
or counterclockwise (S).
CONVECTIONAL METHOD: This method does not require you to look directly
from the opposite side.
Step 2: If the least prioritized group is behind the plane (dash line), check if the
decreasing priority order of functional groups is clockwise (R) or counterclockwise
(S).
Step 3: If the least prioritized group is not behind the plane, switch that group
with the group that is currently behind the plane. Repeat step 2 to determine the
configuration of the new structure. The original configuration is the reverse of the new
configuration.
NOTE:
• The maximum number of normal lines is 2.
• The maximum number of dark line and dash line is 1 for each.
• When switching the groups, the number of times you switch determine the
relationship between new and old configurations:
➢ Number of times is even (2n): New = Original
➢ Number of times is odd (2n+1): New is the reverse of Original.
2) Newman projection:
When there are two chiral center, we can also display them in Newman projection:
Convert perspective formula to Newman projection: Look directly at the line with 2
chiral center from left to right.
3
For consistent result:
• All lines on the right side of the circle: In front of the plane, closer to you.
• All lines on the left side of the circle: Behind the plant, farther from you.
Examine configuration: It is best to convert them to either fisher or perspective and
determine the configuration.
NOTE: Check all the groups and lines are in the correct position with the correct
carbon center.
3) Fischer projection:
When display fisher projection, the cross section of all 4 groups must be a chiral
center.
4
Step 3: For the second carbon, reverse the side of two functional groups on the
side of carbon center.
NOTE: Two functional groups on the same side of one projection (Newman or
Fisher) will be on the opposite side of the other projection (Fisher or Newman).
Convert perspective formula to Fisher:
Step 1: Determine R, S configuration of the perspective formula.
Step 2: Place the functional groups on Fisher corresponding to each carbon
center. Check chirality and switch place again until the configuration of Fisher is the
same as perspective formula.
To determine R, S configuration:
Step 1: Determine the priority order.
Step 2: Determine the decreasing order based on two cases:
a) If group 4 is on the vertical line: Clockwise is R, counterclockwise is S.
b) If group 4 is on the horizontal line: Clockwise is S, counterclockwise is R.
V. Types of stereoisomers:
NOTE: Meso isomers are compounds with chiral centers, but they are symmetrical.
CHAPTER 2: EFFECTS
I. INDUCTIVE EFFECT (I):
5
Inductive effect is an effect that occurs when the σ bond is polarized. The nature of
this effect is the difference in electronegativity between atoms.
There are two types of inductive effect:
a) Negative inductive effect (-I):
Positive The order of +I: CH- > NH- > COO- > C(CH3)3 > CH(CH3)2 > CH2CH3
inductive effect > CH3 > T > D > H
(+I)
6
Conjugation effect (C) can only occur within a conjugation system.
As O is more electronegative than C, the electrons move through p-bond network
towards C=O.
Similar to inductive effect, there are two types of conjugation effect: +C and -C
Negative The order of -C: NO2 > CN > SO3H > CHO > C=O > COOCOR >
conjugation COOR > COOH > COCl > CONH2 > COO-
effect (-C)
Positive The order of +C: O- > NH2 > NHR > OH>OR > NHCOR > OCOR >
conjugation Ph (C6H5) > F > Cl > Br > I
effect (+C)
If both conjugation effect and inductive effect are present, conjugation effect is
stronger than inductive effect except for HALOGEN (-I > +C).
Factor affecting the amplitude of the effect:
• Relative position: No conjugation system => No conjugation effect.
Example:
7
Conjugation effect also explains why allylic and benzylic carbocation are very stable:
NOTE: FOR BENZENE, Ortho and Para position can have C but meta will not have
C effect.
III. HYPERCONJUGATION EFFECT (H):
Hyperconjugation effect involves the partial overlap of electron pairs in C-H bond of
CH3 and the empty p orbital of carbocation:
Since CH3 can rotate freely, all three C-H bonds have this effect.
The more CH3 groups directly connecting to carbocation present, the more
hyperconjugation effect there is.
The more C-H bonds , the stronger inductive effect is
The hyperconjugation effect is responsible for stability of carbocation and free radical.
IV. STERIC EFFECT:
Steric effect is responsible for relative reaction rates caused by the molecules
attaching at/near the reacting site:
8
V. ORTHO EFFECT:
Ortho-substituents on benzene rings have complicated effect.
IT IS BEST TO REMEMBER BY HEART
Case 1:
WHY ?
Case 2:
9
WHY ?
VI. HYBRIDIZATION
The relative electronegativity of hybridized orbitals is sp > sp2 > sp3.
VII. ACID BASE COMPARISION:
1) Acid comparison:
The following steps should be followed for arranging acid in decreasing order:
Step 1: Determine all groups in the following acid strength order: Sulfonic acid
(RSO3H) > Organic acid (RCOOH) > Phenol > Water > Alcohol.
Step 2: For each compound in each group, determine the main effect. Then arrange
them in this order: -C > -I > None > +I > +C
Example: Arrange these compounds in the decreasing strength of acid:
a)
10
b)
c)
2) Base comparison:
You can do acid comparison and flip the order.
NOTE: For amine, aromatic amine is more acidic than alkyl amine.
11
VIII. CARBOCATION STABILITY:
The following order is applied when comparing which carbocation is more stable:
CHAPTER 3: MECHANISM
I. NUCLEOPHILIC SUBSTITUTION (SN):
SN2 SN1
Procedure Just insert the nucleophile on Step 1: Remove original
the opposite side of the nucleophile. The carbon
original nucleophile. attached to that nucleophile
will become carbocation.
Step 2: Carbocation
rearrangement.
Step 3: Insert the nucleophile
on either si
+de of the carbocation.
12
How to determine which SN Step 1: Determine carbon structure.
• Primary carbon: SN2
• Tertiary carbon: SN1
• Secondary carbon: follow step 2.
Step 2: Determine nature of solvent:
• Polar aprotic solvent (DMSO, DMF, acetonitrile):
SN2
• Polar protic solvent (alcohol, water): SN1
E2 E1
Procedure Case 1: C2 no stereochemistry Step 1: Remove
• Simple base (KOH, NaOH, original nucleophile.
RONa): Zaitsev rule, more The carbon attached
substituted alkene is to that nucleophile
obtained. will become
• Bulky base (R3CONa): carbocation.
Hofmann rule, opposite of Step 2: Carbocation
Zaitsev. rearrangement.
• Usually, trans is favored. Step 3: Form alkene
Case 2: Stereochemistry with the most stable
• Periplanar geometry. carbon next to it that
• Anti-positions. has H.
Products 1 product (Zaitsev or Hofmann) 1 product (usually
trans)
How to determine which Step 1: Determine carbon structure.
E • Primary carbon: E2
• Secondary and tertiary carbon: Follow step 2
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Step 2: Determine nature of solvent and base.
• Strong base (OH-,OR-): and polar aprotic
solvent (DMSO, DMF, acetonitrile): E2
• Weak base and polar protic solvent (H2O,
ROH): E1
CHAPTER 4: ALKANE
I. SYNTHESIS:
1) Hydrogenation of unsaturated hydrocarbon
This reaction is syn addition => Add two H on the same side.
With this catalyst, only alkane is obtained.
2) Hydrogenation of carbonyl compounds (Aldehyde and Ketone only)
14
3) Corey-House reaction from alkyl halides (R-X)
Mechanism:
15
This reaction is selective based on radical stability:
CHAPTER 5: ALKENE
I. SYNTHESIS:
1) Hydrogenation of alkyne:
DO NOT USE Raney catalyst as the final product will be alkane, not alkene.
Instead, use these two catalysts:
a) + H2 Lindlar catalyst (Pd/CaCO3/Pb(OAc)2/quinoline)
Syn addition: 2 H are added to the same side of C=C
b) Na/NH3 (liquid)/-78 oC
Anti addition: 2 H are added to opposite side of C=C
16
2) Wittig reaction: applied to carbonyl
Mechanism:
17
NOTE:
• Carbocation rearrangement can occur via H-shift. If no H exists, CH3-shift
will take place.
• You can only rearrange to the adjacent carbons.
18
Example:
19
4) Elimination of alkyl halide: Basic condition
This reaction follows E2 mechanism. This reaction can only occur with base and
heat.
Case 1: Simple base (-OH, -OR) => Still follow Zaitsev’s rule
Example:
20
II. CHEMICAL REACTION:
The majority reactions of alkene will be addition. For alkene, this addition works
based on Electrophilic addition mechanism (AE) due to the high electron density of
alkene:
H
H
21
Step 3: Add X to the carbocation center. Since X is added to carbocation center,
both configurations R, S are obtained.
Example:
However, acid catalyst (H2SO4, H3PO4) helps protonate water to form electrophile:
22
b) Anti-Markovnikov rule:
There are two cases that does not follow Markovnikov rule:
Case 1: One of the attaching groups to alkene is EWG:
Since carbocation is electron-poor, any electron withdrawing group will destabilize it.
WHY?
This reaction is radical addition:
23
Like stereochemistry of carbocation, we can obtain both configuration R, S.
2) Addition of halogens:
This reaction follows:
• Markovnikov rule
• No rearrangement due to formation of cyclic halonium ion, which is more
stable than carbocation.
• Anti addition
SPECIAL CASE: In the presence of other anions (RCOO-, RO-, -OH,etc), these
anions will replace the role of Br-.
Example: Determine the final products and its stereochemistry:
24
3) Formation of alcohol via oxymercuration-reduction:
This reaction follows:
• No rearrangement
• Markovnikov addition
• Anti addition
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• Syn addition
5) Formation of diols:
a) Epoxidation of alkene – Ring opening with acid:
Anti addition:
26
Case 2: In heated acid or basic solution:
The product varies based on the attaching group to each carbon of double bond:
7) Ozonolysis of alkene:
27
CHAPTER 6: ALKADIENE
This chapter will focus primarily on conjugated diene.
I. SYNTHESIS:
Elimination of R-OH or R-X:
This part is similar to alkene. The main difference is one of the attaching groups is
also an alkene, creating the final product a conjugated diene.
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High temperature favors 1,4 additions while low temperature favors 1,2 additions.
2) Diels-Alder reaction:
• Syn addition
• Alkadiene must be in cis form.
• Z alkene => Both high priority groups are on the same side.
• E alkene => Both high priority groups are on the opposite side.
• Alkene with no Z/E => Racemic mixture (R and S)
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CHAPTER 7: ALKYNE
I. PROPERTIES:
To separate a proton of acid, we need to use a base that is stronger than the formed
conjugated base.
Due to alkyne acidic property, it can react with Na, NaNH2 to form acetylide
anions:
II. SYNTHESIS:
1) Elimination of dihalides: Under strong base at high temperatures, H-X
elimination occurs. However base selection can affect the outcome:
• KOH/EtOH: Internal alkyne
• NaNH2: Terminal alkyne.
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III. CHEMICAL REACTION:
1) Substitution reaction with primary alkyl halide (RCH2X):
Acetylide anion as a nucleophile can react with RCH2X via SN2 to form an alkyne
with longer carbon chain:
NOTE: For acetylene, ratio should be noted to ensure substitution occurs on one
side, not both sides.
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4) Addition of H2O in acid:
• Markovnikov rule, no rearrangement.
• For terminal alkyne: Hg2+ is required.
• Product: Ketone (R-CO-R) except for C2H2
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6) Oxidation of alkyne:
• Product: carboxylic acid (COOH) and CO2 (terminal alkyne only)
CHAPTER 8: ARENES
I. CRITERIA FOR AROMATICITY
A molecule is aromatic if and if only:
• It is cyclic.
• The molecule is planar.
• Conjugated (no sp3)
• Have 4n+2 p electrons.
Example:
33
Example: Determine which compound is aromatic
34
II. CHEMICAL REACTION
1) Main mechanism:
For aromatic compounds, the main mechanism is electrophilic aromatic
substitution (SEAr):
2) Halogenation of benzene:
35
• Catalyst (must have): Lewis’s acid (Fe3+, Al3+)
3) Nitration of benzene:
• Catalyst: Concentrated H2SO4
4) Sulfonication of benzene:
More specifically:
b) Phenol:
36
5) Friedel-Crafts alkylation of benzene:
• Carbocation formation and rearrangement.
b) Alkene:
37
c) Alcohol:
38
How to synthesize:
40
10) GENERAL RULE FOR SYNTHESIZING BENZENE WITH MULTIPLE
GROUPS:
EDG (Electron-donating
groups)
41
42
EWG (Electron-
withdrawing groups)
• If the 1st group is EDG (positive effect), the next group will be attached to ortho, para
position. Usually, para is favored due to no steric effect in ortho
• If the 1st group is EWG (negative effect), the next group will be attached to meta
position.
• If there are multiple groups, determine the most positive group and attach the group
following the directing position of that group.
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• If there are two or more benzene connecting to each other, determine which one has
the most positive substituents and attach the group to the position following the
directing order of the substituents.
• DO NOT add the group between two groups due to high steric effect.
• ALKYLATION AND ACYLATION does not occur when strong EWG is present. To
make sure no problem occurs, try to avoid alkylation and acylation when weak or
strong EWG groups are present.
Example: Synthesis:
• ALKYLATION AND ACYLATION cannot be performed when NH2, NHR, NR2 are
present.
44
Example:
To synthesize Alkoxide:
Example: Synthesize:
45
2) Chemical reaction:
a) Protonation reaction
• RMgX are strong base:
46
b) Reaction with carbonyl groups (Ketone and Aldehyde):
• Product: Alcohol with addition R from RMgX
• Must have protonation reaction in the 2nd step to obtain alcohol
47
Mechanism:
48
c) Reaction with ester:
• Product: Alcohol with 2 R from RMgX
• Must have protonation reaction in the 2nd step to obtain alcohol.
Mechanism:
Example:
49
d) Reaction with Nitrile (CN):
• Product: Imine.
• Imine can be used to synthesize ketone via hydrolyzation in acidic
environments
50
I. ALCOHOL SYNTHESIS:
1) From alkene:
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c) Carboxylic acids and its derivatives:
• Reducing agent: LiAlH4 only
• Product: Primary alcohol
52
II. CHEMICAL REACTION OF ALCOHOL:
1) Dehydration of alcohol:
53
2) Conversion of alcohols to alkyl halide:
Two new reagents for SN2 reaction of 1o, 2o alcohols:
• SOCl2 (solvent: Pyridine): Cl substitution
• PX3, PX5 (X: Cl, Br): X substitution
Pyridine
3) Ether synthesis:
a) Dehydration of primary alcohols:
• Williamson synthesis (RONa + RX): Useful for all cases
• Dehydration of primary alcohol ONLY: To synthesize symmetrical ether
• SHOULD NOT BE USED
o Temperature can cause side effects: Alkene formation
o Only applied to primary alcohols: Higher degree tends to form
carbocation easily, promoting formation of alkene.
b) Intramolecular ether:
• Dehydration of diols can produce intramolecular ether containing 5 or 6
members rings:
4) Esterification:
54
5) Oxidation of alcohols:
• Oxidizing agents: CrO3 or Na2Cr2O7 in H2SO4, H2CrO4, KmnO4
• Note: Cr does not cleavage alkene
• Products:
o Tertiary alcohol: No reaction
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III. CHEMICAL REACTION OF PHENOL:
1) Alkoxide formation:
• While alcohol CANNOT react with NaOH, phenol can due to its acidity
higher than alcohol and water.
• In adittion, K2CO3 and Na2CO3 can also be used.
2) Esterification reaction:
• Phenol DOES NOT react with Carboxylic acid
• Can react with annhydride (RCO)2O and acyl chloride
3) Halogenation reaction of phenol
• Due to OH group, halogenation reaction can occur without the usage of
Lewis acid
• The final product of halogenation reaction of phenol depends on solvent:
o Non-polar solvent (trans ClCH2CH2Cl): Halogen is substituted one
time only
o Polar solvent (H2O): Halogen is substituted three times. Cannot
obtain one halogen substituted.
56
4) Nitration reaction:
• Unlike benzene, phenol does not require catalyst H2SO4
Example:
57
CHAPTER 11: ALDEHYDE AND KETONE
I. Aldehyde/Ketone synthesis
1) From alkene:
• Oxidizing agent:
o KmnO4, heat or K2Cr2O7, H+: Ketone and carboxylic acid
o 1. O3 2. H2O2: Ketone and carboxylic acid
o 1. O3 2. Zn/CH3COOH: Ketone and aldehyde
2) From alkyne:
3) From alcohols:
• Mn(VII), Cr(VI): Ketone and acid
• PCC: Ketone and aldehyde
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II. Chemical reactions
1) Nucleophilic addition with HCN
• Product: Cyanohydrin (=O convert to OH and addition of CN as well)
• CN of cyanohydrin can conver to
o CH2NH2 via LiAlH4 or H2/Metal
o COOH via hydrolysis in acidic enviroment
Mechanism:
59
3) Nucleophilic addition with amine
• Product: Imine (for ammonia, primary amine) and enamine (for secondary
amine)
• Reaction can only happen when N still have at least 1H
• Reaction is reversible and occurs in acidic environment
Example:
60
4) Nucleophilic addition with H2O
• Product: Geminal diol
• Can occur in either acidic environment or basic environment
61
Example: Synthesis the following compounds
6) Aldol reaction:
• Base environment.
• Only aldehyde/ ketone with Calpha-H can react.
• Aldol products will be the sum of both reactants.
• Aldol products: Calpha will connect with C of C=O bonds and C=O will
become C-OH.
62
Aldol produts are easy to be eliminated H-OH in basic or acidic
environments
Creating double bond
There are three types of aldol reaction:
• Aldol reaction with itself:
63
• Intramolecular aldol reaction
7) Cannizzaro reaction:
• Only aldehyde without Calpha – H can react
• React in basic conditions
• Products: Primary alcohol and carboxylic acid
64
8) Halogenation at Calpha-H:
• Acidic enviroment: Replace 1H
• Basic enviroment: If Halogen is exceed, replace all H of C alpha
• How to add CN ?
65
3) From primary alcohol and aldehyde
• Oxidizing agent:
4) From alkyl benzene:
• Carbon connecting to benzene must have at least…… to create COOH
II. Chemical reaction:
1) Acyl halide formation:
• Halogenation with SOCl2, PX3, PX5 (X: Cl, Br)
2) Esterification:
Example: Determine the missing reactant
3) Bromination at Calpha:
66
• Reagent: P + Br2 or PBr3 + Br2
• Product: Convert H of Calpha to Br
2) Transesterification:
• Reversible reaction in acidic and basic conditions
• Reagents: Ester and a different alcohol
• Products: Exchange the OR of the original ester with OR of the alcohol
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V. Anhydrides chemical reaction:
1) Amide formation:
2) Carboxylic acid formation:
VI. Acyl halides chemical reaction:
1) Corey House reaction:
2) Amide formation:
3) Hydrolysis of acyl halides:
VII. Amide synthesis:
• Must have temperature
68
3) Reduction:
• Product: Amine
• Can only use LiAlH4
2) From amides:
• Using LiAlH4 to produce …. amine
3) From nitrile and imine
69
4) From nitrobenzene:
• Method 1: H2/ metal
o Function:
o Disadvantages:
• Method 3: (NH4)2S
o Function: Reduce only 1 NO2 to NH2
70
1) Reaction with aldehyde and ketone:
2) Amidation reaction:
3) Unwanted reaction:
a. Oxidizing reaction:
• Amine can be oxidized easily by strong oxidizing agent
• Product: Convert NH2 to NO2-
71
c. Protection method
• Create amide first then convert back to amine via hydrolysis in acid
condition.
Example:
72
4) Reaction of amine with HNO2
• Only applied to aromatic amine.
73
5) Diazonium coupling reaction:
74