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Article history: The compound 1-Isoquinolinyl phenyl ketone (1IPK) was studied theoretically as a corrosion inhibitor by
Available online 30 January 2021 quantum mechanics calculations and docking models. Density functional theory (DFT) of B3LYP/6-311G
(d,p) and parameterization model 3 (PM3) using the Gaussian-09 and CASTEP programs was also
Keywords: employed to discuss the inhibition ability. Molecular graphic laboratory (MGL) tools program and discov-
Acidithiobacillus Ferrooxidans ery studio visualizer (DSV) used to estimate the ability for inhibition Acidithiobacillus Ferrooxidans (AF)
DFT bacteria, which is responsible for the corrosion. The calculations of physical properties and quantum
ESP
chemical parameters correlated to the inhibition efficiency and discussed at the equilibrium geometry.
MEP
Corrosion
The results indicated that the 1-Isoquinolinyl Phenyl Ketone could be adsorbed on the mild steel surface
HOMO firmly through the nitrogen atom on the isoquinoline rings and the carbonyl group. Besides, the moderate
values of parameters describe the low-efficiency of inhibition in acidic and saline medium. Total electron
density (TED) and electrostatic surface potential (ESP) Figures showed the active site that is involved in
the inhibition processes. In addition, the adsorption types were studied by different parameters.
Ó 2021 Elsevier Ltd. All rights reserved.
Selection and peer-review under responsibility of the scientific committee of the 3rd International Con-
ference on Materials Engineering & Science. This is an open access article under the CC BY-NC-ND license
(http://creativecommons.org/licenses/by-nc-nd/4.0/).
https://doi.org/10.1016/j.matpr.2020.12.310
2214-7853/Ó 2021 Elsevier Ltd. All rights reserved.
Selection and peer-review under responsibility of the scientific committee of the 3rd International Conference on Materials Engineering & Science.
This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
E. Abdul Hussein, D.Y. Fanfoon, Raheem A.H. Al-Uqaily et al. Materials Today: Proceedings 42 (2021) 2241–2246
inhibition of the compound 1-Isoquinoline phenyl ketone. In addi- that involve frontier orbital theory (FMO) can provide the distribu-
tion, examine if it inhibits AF bacteria, which is one of the reasons tion of electron density and (DE = ELUMO-EHOMO) which can provide
for corrosion. an information about the stability of the molecule. The energy of
highest occupied molecular orbital (EHOMO) refers to the ability to
2. Calculation models give the molecule of inhibitor with large EHOMO an electron to
any acceptor orbital with a lower molecular energy. On the con-
The construction of the compound was build used the Chem- trary, the energy of lowest unoccupied molecular orbital (ELUMO)
Draw of Mopac program then equilibrium geometries were calcu- refers to the orbital, which accepts an electron from any orbital
lated by Gaussian 09 package [6]. Density functional theory (DFT) with a higher energy level.
was used with (B3LYP), and 6-311G (d, p) basis set [7,8] for calcu- The energy gap between the molecular orbitals (DE) is another
lating the geometry of the investigated molecule in the vacuum essential factor in the description of the molecular activity, when
medium. The final geometry of 1IPK, according to the most accu- the energy gap decreased; the efficiency of the inhibitor improves.
rate method (DFT) is given in Fig. 1. The adsorption type studied The quantum parameters suggests the efficiency of the inhibitor
by CASTEP program with parameterization model 3 (PM3) method [3,15,16], such as molecular orbital (HOMO and LUMO), the energy
[6]. Docking calculations used to predict the ability of the studied gap (DE = ELUMO-EHOMO), the dipole moment (m), the ionization
compound to inhibit the AF bacteria. energy (IE), electrophilicity index (x), the global softness (S), elec-
The protein structure (3F9S) downloaded by (Research Collabo- tronegativity (v), absolute hardness (g) and electron affinity (EA),
ratory for Structural Bioinformatics) RCSB [9]. The protein and which have been resulted from the DFT method (Table 2). Accord-
inhibitors structures were processed to a format recognized by ing to the Koopman theory [11,17], the ionization energy (IE) is
the ADT (*.pdbqt files) by adding all hydrogen atoms, Gasteiger related to HOMO, whereas the electron affinity (EA) is related to
charges, and merging the polar hydrogen atoms by Molecular Gra- LUMO energy, as follows:
phic Laboratory (MGL) tools program [10]. The box size at the point IEðIonization potentialÞ ¼ EHOMO ð1Þ
(126, 108 and 126), and the center grid box at the point (1.383,
18.978 and 40.592) for , y and z, respectively. Modification pro- IE is the amount of energy required for removing the electron
cesses on AF structure were done by deleted ligands (GOL, MSE). from an atom. The low ionization energy gives high efficiency for
inhibition.
Table 1
Calculated bond lengths and angles of 1IPK molecule using DFT method.
Description Bond length Bond length (Å) Description angle (deg) Angle (deg) Description Dihedral angle (deg) Dihedral angle (deg)
C1-C2 1.41378 C1C2C3 120.86682 H19C1C6C5 179.95471
C1-C6 1.37198 C2C6C5 120.38306 C4C5C6C1 0.16463
C11-C13 1.49729 C5C4C3 118.58471 C1C2C3C4 0.33168
C6-C5 1.41854 N10C8C4 123.25936 H22C6C5C4 179.97606
C13-C14 1.40258 C6C5C7 122.29749 C3C4C8C11 5.11700
C5-C4 1.43015 C7C9N10 123.21126 H23C7C5C4 179.06930
C14-C15 1.38823 C11C13C14 117.10723 N10C8C11O12 139.02135
C4-C3 1.42087 C14C15C16 119.93698 C11C13C18H21 3.68052
C4-C8 1.43573 C8C11O12 123.25936 H24C9N10C8 178.68318
C5-C7 1.41555 C16C17C18 120.24764 H26C16C17O27 0.02396
C15-C16 1.39544 H25C14C15H26 0.77853
C8-C11 1.51656 H19C1C6H21 0.09812
C7-C9 1.37065 C6C5N7H22 0.17127
C16-C17 1.39305 H23C75C9H24 0.27225
C8-C10 1.31920 O12C11C13C18 163.05488
C11 = O12 1.21956 C13C14C15H26 179.3338
C9-N10 1.35479 H26C15C16C17 179.9301
Table 2
Some physical properties of the 1IPK inhibitor calculated using DFT method in vacuum medium at the equilibrium geometries.
the electronic charge is high are chemically softer than that of low tal) and red color to the LUMO ones (acceptor electrons orbital).
charge, so the electron density plays a vital role in calculating the This implies that most parts in the 1IPK molecular orbitals will
chemical reactivity. Chemical adsorption interactions are either by interact effectively with metal orbitals through donating or accept-
electrostatic or orbital interactions, so the electrical charges in the ing electrons.
molecule considered as the driving force of electrostatic interac-
tions. Moreover, the proven charges are essential in the physico-
3.3. The electron density
chemical properties of compound reactions [21,22,23,24]. The
highest negative charge is concentrated on the nitrogen (N), oxy-
Total electron density (TED) showed the electron density on the
gen (O) and certain carbon atoms, therefore, the nucleophilic
studied molecule. The red color refers to the sites with the high
attack would be at these sites (Fig. 2).
electronegativity such as the O and N atoms and some sites on
In the structure, the electrophile (blue) gains the electrons from
the metal, then releases them again. The most reactive molecule is
the one with more electron acceptor sites. The electrons from 3d
orbitals of the Fe element are allowed to form back interaction,
and thus reinforce the total interaction between the inhibitor and
Fe surface. Based on the above findings, the 1IPK inhibitor has a
broad variety of functional adsorption centers such as N, O atoms
and p-electrons of the rings, which donate electrons to the mild
steel surface for bonding. Furthermore, the HOMO and LUMO orbi-
tals, and the optimized structure of 1IPK have shown in Fig. 3. The
green color sites refers to the HOMO orbital (donor electrons orbi-
Fig. 2. Calculated Mullikan charges for 1PK inhibitor using DFT method. Fig. 3. Molecular orbitals distribution (HOMO-LUMO) in the 3D structure of 1IPK.
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E. Abdul Hussein, D.Y. Fanfoon, Raheem A.H. Al-Uqaily et al. Materials Today: Proceedings 42 (2021) 2241–2246
the aromatic rings, which can aid in the electrophilic attack. In 3.4. Adsorption study
addition, the yellow color represent atoms with moderate elec-
tronegativity. The blue zone displays the best positive area for We can predict the adsorption type according to eq. (7) in com-
the inhibitor molecule [15]. The ESP suggests the direction of the paring DE values for a suggested linkage between the surface and
adsorption of the molecule on the metal surface, which is the same the inhibitor [16], Table 3. The proposed surface is Fe and carbon,
direction of carbonyl group. TED and ESP of 1IPK are shown Fig. 4. which is close to be a steel alloy. Optimization processes were done
using PM3 method for the surface (Fe-C), 1IPK and (Fe-C-1IPK). In
the first state, we consider the bond covalent in Fe-C-1IPK as a
chemical bonding, while the other states considered as an interac-
tion (physical), as shown in Fig. 5. The oxygen atom have a high
electron density according to TED and ESP calculations, so it is
the active site in these interactions. Depending on the high DE
obtained in the present study, we can conclude that the adsorption
type is chemical one.
Fig. 5. The linkage between the inhibitor and the metal surface.
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E. Abdul Hussein, D.Y. Fanfoon, Raheem A.H. Al-Uqaily et al. Materials Today: Proceedings 42 (2021) 2241–2246
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