Mwangi (2019)
Mwangi (2019)
Mwangi (2019)
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found in virtually all living organisms, from simple prokaryotes Levin et al., 1999; MacNair et al., 2018).
to complex eukaryotes (Figure 1). They play important roles in In vertebrates, AMPs can directly kill microorganisms and
the direct killing of infectious agents, viruses, bacteria, fungi, play a role in immunomodulation through the activation and
and parasites and through the modulation of immune recruitment of immune cells during infection (Kumar et al.,
processes such as activation and recruitment of immune cells, 2018; Mahlapuu et al., 2016). Several different classes of
wound healing, angiogenesis, and inflammation (Haney & AMPs, such as cathelicidins and defensins, have been
Hancock, 2013; Kumar et al., 2018; Maróti et al., 2011; isolated and characterized from immune cells, bodily
Oppenheim et al., 2003; Zhao et al., 2013). secretions, and epithelial tissues of amphibians and marine
and terrestrial animals (Lu et al., 2008; Wang et al., 2016). For
example, several AMPs have been identified from amphibian
skins, where they are produced in glands of the dermal skin
layer and released following pathogenic exposure, inducing a
microbicidal action through membrane disruption (Rollins-
Smith et al., 2005; Woodhams et al., 2007). In humans,
psoriasin, dermcidin, and lactoferrin are continuously secreted
by the sweat glands to form an important barrier against
infection, and cathelicidin LL-37 is secreted following microbial
introduction (Harder et al., 2013). Nearly 30 cathelicidins have
Figure 1 Number of natural and synthetic antimicrobial peptides been characterized from domestic and wild mammals
from different kingdoms (total 3 011) as of July 2019 (Kościuczuk et al., 2012), and are stored as inactive
Data obtained from antimicrobial peptide database http://aps. unmc. precursors in neutrophil granules and activated following
edu/AP/ (Wang et al., 2016). microbial exposure (Treffers et al., 2005). Apart from
cathelicidins, several other classes of antimicrobial peptides
have been isolated and identified in vertebrates (Brogden et
In most organisms, high concentrations of AMPs are
al., 2003; Zhang, 2006; Zhang et al., 2008). These AMPs have
expressed on surfaces that are constantly exposed to
diverse MOA and play multifunctional roles, including
pathogens. For example, the mucosal lining and skin of
modulation of immune responses, prevention of excessive
vertebrates display broad-spectrum antimicrobial activities
tissue damage, alleviation of inflammation, and destruction of
(Brogden et al., 2003; Rinaldi., 2002). In general, AMPs are
invading pathogens to mitigate infection onset (Haney &
either produced continuously or up-regulated following
Hancock, 2013; Maróti et al., 2011; Oppenheim et al., 2003).
exposure to a threat (Ganz, 2003). For example, human skin
Several vertebrate AMPs show excellent therapeutic
is continuously protected by an abundance of psoriasin,
potential due to their antibacterial, antiviral, antifungal, and
dermcidin, and lactoferrin, with cathelicidin LL-37 also up- anti-inflammatory properties (Oppenheim et al., 2003; Qi et
regulated following infection (Harder et al., 2013). In bacteria, al., 2019), whereas others show improved clinical efficacy,
AMPs play an important role in enhancing adaptability and structural stability, and potent antimicrobial activity against
survival during antagonistic competition for resources with several MDR pathogens following modification (Kumar et al.,
other bacteria occupying the same ecological niche (Kumar et 2018; Schmidtchen et al., 2014; Zhang et al., 2019).
al., 2018). Several peptides with potential therapeutic activity In contrast to vertebrates, insects and plants lack an
have been isolated from bacteria and demonstrate potent adaptive immune system, relying entirely on the innate
antimicrobial activities against both gram-negative and gram- immune system for defensive purposes, with AMPs playing a
positive bacteria and even fungi. These AMPs are known as pivotal role in the protection against invading pathogens.
bacteriocins and play important roles in inhibiting or killing Several AMPs have been isolated and analyzed from the
antagonistic bacterial strains with no self-harm, thus epithelial cells, hemocytes, and hemolymphs of insects
conferring a critical survival strategy (Yang et al., 2014). (Brown et al., 2009; Hancock et al., 2006; Philippe & Reto,
Bacteriocins provide important prospects for the development 2005). Peptides isolated from insects are usually cationic and
of alternative antibiotic strategies against different bacterial kill bacteria through permeabilizing bacterial membranes, and
pathogens and are also useful in the food industry as further possess potent microbicidal activity either singly or
preservatives (Mills et al., 2011; Silva et al., 2018). Bacteria- synergistically with traditional antibiotics (Yi et al., 2014).
derived AMPs include nisin, a 34-amino acid residue peptide Notable examples of insect-based AMPs include cecropins,
and an important food preservative isolated from Lactococcus defensins, drosocins, and diptericins, which exhibit activities
lactis (Tong et al., 2014), and colistin, isolated from against both gram-negative and gram-positive bacteria as well
Paenibacillus polymyxa and used extensively in agriculture as fungi (Mylonakis et al., 2016; Rozgonyi et al., 2009; Wu et
and human prophylaxis (Poirel et al., 2017). Colistin is an al., 2018; Zhang & Gallo, 2016).
important last-resort peptide drug used against several MDR AMPs also play important defensive roles in plants (which
nosocomial pathogens such as MRSA, MDR P. aeruginosa, also lack an innate immune system). Several peptides have
and carbapenem-resistant pathogens, although its use is been isolated and characterized from the leaves, roots, seeds,
somewhat limited due to its side effects (Falagas et al., 2005; and tubers of plants (Tam et al., 2015). Generally, they exhibit
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Figure 2 Structural diversity and helical wheel projections of representative AMPs
A: α-helical-magainin (PDB ID 2LSA). B: β-sheet-chicken ovo-defensin (PDB ID 2MJK). C: Extended coil-tritrpticin. Images were created with
Protein Data Bank (PDP) (Bioinformaticsdoi:10.1093/bioinformatics/bty419) (Rose et al., 2018) and visualized with Jmol software. D: Helical
wheel projections of four representative peptides showing physical properties canonical to all AMPs, including distribution of amino acid residues,
net charge, and hydrophobicity established to correlate with antimicrobial activity, selectivity, and cytotoxicity. Positively charged residues (polar) are
represented as blue circles and hydrophobic (nonpolar) residues are yellow circles. Wheels projections, net charge, and hydrophobicity of AMPs
were generated with HeliQuest webserver (http://heliquest.ipmc. cnrs.fr/).
1999; Matsuzaki, 1999). The cationic charge influenced by Hydrophobicity is crucial for peptide selectivity to biological
amino acid residues such as Arg and lysine (Lys) enhances membranes and increased hydrophobicity is correlated with
selectivity for negatively charged bacterial plasma membranes increased hemolytic activity as highly hydrophobic AMPs
while exhibiting low electrostatic interactions with the have a stronger ability to penetrate the hydrophobic core of
uncharged outer layer of the eukaryotic cell membrane erythrocyte membranes (Chen et al., 2007; Tachi et al.,
(Guilhelmelli et al., 2013). Current efforts at improving the 2002).
selectivity for and electrostatic interaction of AMPs with Understanding the MOA of AMPs is paramount for
bacterial membranes involve the substitution of amino acids unlocking their full potential as next-generation antibiotics.
with positively charged amino acid residues like Arg and Lys Extensive research has been conducted, and is still ongoing,
(Arias et al., 2018; Yeaman & Yount, 2003). For example, Jin to unveil the MOA of AMPs (Guilhelmelli et al., 2013; Hancock
et al. (2016) reported that substitution of amino acids & Lehrer, 1998; Ulm et al., 2012). Based on their MOA, AMPs
improved antimicrobial efficacy, increased stability, and can be classified into those that kill through membrane
reduced the hemolytic activity of the designed peptide ZY13 disruptive mechanisms and non-membrane disruptive
compared to its precursor peptide cathelicidin-BF15. mechanisms, as illustrated in Figure 3. For the membrane
Previous studies have also indicated a strong correlation disruptive killing action, AMPs produce microbicidal activity by
between the cationic charge of an AMP and its antimicrobial targeting and disrupting the bacterial plasma-membrane
activity, with data showing improved antimicrobial activity of structure, mostly through permeabilization, thus resulting in
several AMPs against both bacterial and fungal pathogens leakage of intracellular content (Huang et al., 2010). An
paralleled with an increase in cationic charge (Gagnon et al., important aspect to consider for this MOA is the concentration
2017; Hong et al., 2001; Lyu et al., 2016); however, increased threshold of peptide molecules on the bacterial membrane
hemolytic activity has been observed for several AMPs surface for effective permeabilization via interaction of
following an increase in net charge (Chen et al., 2005; Jiang positively charged AMP residues with negatively charged
et al., 2008). Secondly, hydrophobicity is an important moieties on the bacterial membrane surface (Chen et al.,
parameter of all AMPs and is attributed to a substantial 2007; Shai, 2002). To drive this membrane disruptive MOA,
proportion (almost 50%) of hydrophobic residues in peptide three models have been postulated, i. e., barrel-stave, carpet-
sequences, such as leucine, valine, isoleucine, alanine, like, and toroidal pore models. For all models, the MOA begins
methionine, tyrosine, tryptophan, and phenylalanine. with the accumulation and organization of AMP molecules
Figure 3 Schematic of membrane disruptive and non-membrane disruptive bacterial killing mechanisms of AMPs
Illustration created with BIORENDER.COM.
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range against several bacteria strains, with a low likelihood for potential and reduced side effects (Chou et al., 2008; Liu et
selection of resistance, therefore creating hope in the war al., 2015). Such strategies have focused on improving
against MDR pathogens (Deslouches & Di, 2017; Loeffler et efficacy, structural stability, and protection from proteolytic
al., 2001; van't Hof et al., 2001). degradation, and include chemical modifications such as
Natural and synthetic peptides have proven to be effective acetylation, enrichment with non-natural D-amino acids,
in combating several pathogens, including MDR gram-positive substitution of amino acid residues, and use of delivery
and gram-negative bacteria (see Table 1), with continued systems (Nordström & Malmsten, 2017; Zhang et al., 2019;
effort aimed at designing peptides with improved therapeutic Zhao et al., 2016).
Table 1 Select antimicrobial peptides with potent activity against MDR pathogens
Peptide Sequence Development phase Description
LLGDFFRKSKEKIGKE- From human leucocytes, kills bacteria through pore formation and pos-
Human LL-37
FKRIVQRIKDFLRNLVPRTES sesses immunomodulation activities.
SAAP-148 (de LKRVWKRVFKLLKRY- LL-37 derivative, shows potent bactericidal activity through membrane
Preclinical
Breij et al., 2018) WRQLKKPVR permeabilization and wound healing activity.
Lysine-phenylalanine-rich peptide from snake venom. Shows potent ef-
Cathelicidin-BF KFFRKLKKSVKKRAKEFFK-
ficacy against fungal and bacterial strains including MDR pathogens.
(Wang et al., 2008) KPRVIGVSIPF
Low hemolytic activity.
D-OH-CATH30 KFFKKLKNSVKKRAKKFFK- Cathelicidin from snake venom, rapidly kills MDR gram-positive and
Preclinical
(Zhao et al., 2018) KPRVIGVSIPF gram-negative pathogens, with low hemolytic activity and in vivo toxicity.
Indolicidin Isolated from bovine leucocytes, shows potent bactericidal activity
ILPWKWPWWPWRR III
(Falla et al., 1996) through pore formation.
Omiganan (Melo & Indolicidin derivative, broad-spectrum antimicrobial activity, therapeutic
ILRWPWWPWRRK-NH2 III
Castanho, 2007) agent against acne and catheter related infections.
Ci-MAM-A24 (Fed- WRSLGRTLLRLSHALK- Isolated from Ciona intestinalis, shows potent bactericidal activity
Preclinical
ders et al., 2010) PLARRSGW-NH2 against MRSA, VRE, and MDR P. aeruginosa through pore formation.
Pexiganan GIGKFLKKAKKFGKAF- Magainin analog, phase III clinical trials for treatment of bacterial infec-
III
(Ge et al., 1999) VKILKK-NH2 tions and diabetic foot ulcers. Potent antimicrobial activity.
Thanatin derivative, shows improved antimicrobial activity with reduced
S-thanatin GSKKPVPIIYCNRRSGKC-
Preclinical hemolytic activity. Potently inhibits gram-negative growth in vitro and in
(Wu et al., 2011) QRM
vivo and alleviates sepsis in mice.
Analog of arenicin-3 with β-hairpin structure, exhibits potent microbici-
AA139 (van der GFCWYVCARRNGARVCYR-
Preclinical dal activity against MDR gram-negative pathogens, and excellent can-
Weide et al., 2019) RCN
didate for in vivo application.
Synthetic tetra-branched peptide with potent microbicidal activity
SET-M33 (Van De against MDR bacteria and in vivo therapeutic potential. Currently under
KKIRVRLSA)4K2KβΑ-ΟΗ Preclinical
Weide et al., 2019) development for treatment of sepsis and lung infections (Brunetti et al.,
2016a).
APAKCTPYCYPTHDGVFC- Cysteine-rich peptide cloned from marine fish. Potent microbicidal ac-
EC-hepcidin3 Preclinical
GVRCDFQ tivity against S. aureus and Pseudomonas spp.
Cationic β-hairpin peptide from horseshoe crab. Potent microbicidal ac-
Tachyplesin-1
KWCFRVCYRG ICYRRCR II tivity against gram-negative and gram-positive bacteria. Use limited by
(Ohta et al., 1992)
high cytotoxicity.
Cathelicidin AMPs, which are found in humans and other used as a template for the design of several synthetic
animals, are excellent candidates for therapeutic agents. They peptides with improved antibiotic activity against nosocomial
display multifunctional roles, including potent broad-spectrum pathogens, biofilms, and persister cells (Dürr et al., 2006;
antimicrobial activity against infectious agents such as fungi, Xhindoli et al., 2016). A notable LL-37 derivative (SAAP-148)
viruses, and bacteria, and can trigger specific immune designed by de Breij et al. (2018) through amino acid
responses such as activation and recruitment of immune cells substitution of the C-terminal chain of LL-37 shows potent
(Gennaro et al., 1989; Kościuczuk et al., 2012). The human microbicidal activity (minimum inhibitory concentration (MIC)
cathelicidin LL-37, expressed in various tissues and 0.4 to 12.8 µm) against several ESKAPE pathogens (e. g., E.
circulating cells, is the most extensively studied peptide and faecium, S. aureus, K. pneumoniae, A. baumannii, P.
exhibits potent bactericidal activity against bacterial strains aeruginosa, and Enterobacter species) without selection of
and fungi (Björstad et al., 2009). Furthermore, it has been resistance. This derivative can also eliminate biofilms and
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Arenicola marina (Sierra et al., 2017; Wang et al., 2018). SET- utilization and approval as antibiotic alternatives (Falanga et
M33 is a synthetic AMP exhibiting potent microbicidal activity al., 2016; Lombardi et al., 2019; Wang et al., 2016). The main
against gram-negative bacteria through membrane disruption factor limiting the systemic application of AMPs is their
and an excellent candidate for in vivo application, as sensitivity to proteolytic digestion. For instance, host
evidenced from animal models of infectious diseases having proteolytic enzymes in intestinal mucosa, gastrointestinal
both anti-inflammatory and immunomodulatory activities tract, and blood plasma can readily degrade antimicrobial
(Brunetti et al., 2016b; Falciani et al., 2012; van der Weide et peptides, which negatively impacts their in vivo stability and
al., 2017). pharmacokinetics (Moncla et al., 2011; Starr & Wimley, 2017).
Several AMPs with potent activity against gram-positive and Therefore, as a result, many AMPs are limited to topical
gram-negative MDR and showing excellent prospects as application rather than oral or intravenous administration.
therapeutic agents have also been isolated and characterized Moreover, studies have demonstrated that, as a defensive
from marine animals (Destoumieux-Garzón et al., 2016; Tincu mechanism in the presence of AMPs, certain bacteria will up-
& Taylor., 2004). For example, mytimacin-AF, an 80-cysteine- regulate the secretion of proteolytic enzymes and
rich amino acid residue isolated from marine mollusks, shows metalloproteases (MMPs) that can partially or completely
potent activity against both gram-positive and gram-negative degrade AMPs (Lai et al., 2007; Sieprawska-Lupa et al.,
bacteria, especially against nosocomial pathogens S. aureus 2004).
and K. pneumoniae (MIC<2 μg/mL) (Zhong et al., 2013). EC- Toxicity and efficacy of AMPs is another major drawback of
hepcidin3, cloned from marine fish Epinephelus coioides, is a their use. Several AMPs have adverse side effects in vivo,
novel cysteine-rich AMP with rapid and potent microbicidal which limits their use to topical application only (McPhee &
activity against S. aureus and Pseudomonasstutzeri (MIC< Hancock, 2005). Moreover, in addition to the low correlation
3 μmol/L) (Qu et al., 2013). Tachyplesins, a class of peptides between in vitro- and in vivo-based results in some cases,
isolated from horseshoe crab hemocytes, are cationic β- physiological conditions such as high salt concentration and
hairpin structured peptides with potent antimicrobial activities serum components can negatively affect the antimicrobial
against MDR gram-negative and gram-positive bacteria at low activity of many AMPs (Cantisani et al., 2014; de Breij et al.,
concentrations (Falanga et al., 2016; Liu et al., 2018; 2018; Han et al., 2016). For most AMPs, antimicrobial activity
Nakamura et al., 1988), although with increasing hemolytic is dependent on the electrostatic interactions between
and cytotoxic activity at higher levels (Edwards et al., 2017; positively charged peptides and negatively charged plasma
Liu et al., 2018; Ohta et al., 1992). membranes (Guilhelmelli et al., 2013). Such interactions can
Continued research on AMPs has yielded a new class of be affected by elevated salt levels or binding of AMPs to
highly potent peptides called "Selectively Targeted AMPs" serum components (e. g., lipoproteins) (Li et al., 2017).
(STAMPs), which demonstrate increased sensitivity to target Therefore, efficacy screening of AMPs under different
pathogens without harming normal flora and increased physiological conditions and in the presence of host
bacterial killing potency and kinetics (Chung & Khanum, components is necessary to affirm their activity.
2017). Such AMPs have been designed to target pathogens Compared to conventional antibiotics, AMPs are also
through specific determinants followed by selective killing expensive to produce. Therefore, current efforts are being
(Sarma et al., 2018). Notable STAMPs include synthetic directed at designing shorter peptides with reduced side
peptide M8(KH) -20, a multi-headed peptide specifically effects and improved stability under different physiological
targeting and potently killing P. aeruginosa and Streptococcus conditions (Kim et al., 2013; Zhao et al., 2015). For example,
mutans in vitro with very little effect on other pathogens (He et Li et al. (2017) pioneered an important strategy for designing
al., 2009). Oritavancin, another synthetic STAMP designed AMPs with trypsin inhibitor activity based on a peptide isolated
from the naturally occurring glycopeptide chloroeremoycin and from the frog Odorrana grahami.
currently in clinical development, is reported to be highly Although AMPs have a low likelihood to select for
selective and potently kills MDR pathogens such as methicillin- resistance, reports already exist detailing the development of
resistant S. aureus and vancomycin-resistant S. aureus resistance against some AMPs (Andersson et al., 2016;
(VRSA) more rapidly than vancomycin through membrane Omardien et al., 2016); for example, the development of
permeabilization and inhibition of cell wall synthesis (Allen & resistance to colistin by A. baumannii following long-term
Nicas, 2003; Chung & Khanum, 2017). clinical application (Jeannot et al., 2017; Liu et al., 2016).
Colistin is a last-resort drug used for the treatment of MDR
nosocomial pathogens, and thus resistance to colistin is an
CHALLENGES FACING EXPLOITATION OF AMPs AS important clinical issue (Liu et al., 2016; MacNair et al., 2018;
THERAPEUTIC AGENTS AND SOLUTION STRATEGIES Paterson & Harris., 2016). Several mechanisms have been
reported to be responsible for resistance to AMPs, including
To be considered for approval as a therapeutic agent, effective expression of efflux pumps, surface charge modification to
AMPs need to show broad-spectrum activity, high selectivity impede membrane-peptide electrostatic interactions, and
for bacterial pathogens, and low cytotoxicity on mammalian increased secretion of proteolytic enzymes (Andersson et al.,
cells (Dathe & Wieprecht, 1999). Currently, various AMPs are 2016; Bechinger & Gorr, 2017; Morita et al., 2012). For
under clinical trial; however, several factors curtail their full example, S. aureus can alter surface charge by adding basic
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