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Source path: svn/ trunk/ support_programs/ edge_perserving_filters/ denoise.m 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27

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function varargout = denoise(varargin) % ARTISTIC M-file for artistic.fig % ARTISTIC, by itself, creates a new ARTISTIC or raises the existing % singleton*. % % H = ARTISTIC returns the handle to a new ARTISTIC or the handle to % the existing singleton*. % % ARTISTIC('CALLBACK',hObject,eventData,handles,...) calls the local % function named CALLBACK in ARTISTIC.M with the given input arguments. % % ARTISTIC('Property','Value',...) creates a new ARTISTIC or raises the % existing singleton*. Starting from the left, property value pairs are % applied to the GUI before artistic_OpeningFunction gets called. An % unrecognized property name or invalid value makes property application % stop. All inputs are passed to artistic_OpeningFcn via varargin. % % *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one % instance to run (singleton)". % % See also: GUIDE, GUIDATA, GUIHANDLES % Edit the above text to modify the response to help artistic % Last Modified by GUIDE v2.5 14-Oct-2008 16:07:21 % Begin initialization code - DO NOT EDIT gui_Singleton = 1; gui_State = struct('gui_Name', mfilename, ... 'gui_Singleton', gui_Singleton, ...

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'gui_OpeningFcn', @artistic_OpeningFcn, ... 'gui_OutputFcn', @artistic_OutputFcn, ... 'gui_LayoutFcn', [] , ... 'gui_Callback', []); if nargin && ischar(varargin{1}) gui_State.gui_Callback = str2func(varargin{1}); end if nargout [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); else gui_mainfcn(gui_State, varargin{:}); end % End initialization code - DO NOT EDIT % --- Executes just before artistic is made visible. function artistic_OpeningFcn(hObject, eventdata, handles, varargin) % This function has no output args, see OutputFcn. % hObject handle to figure % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % varargin command line arguments to artistic (see VARARGIN) % Choose default command line output for artistic handles.output = hObject; % Update handles structure guidata(hObject, handles); % UIWAIT makes artistic wait for user response (see UIRESUME) % uiwait(handles.figure1); handles.sigma = 3; handles.number = 8; handles.q = 8; handles.center = 0.5; handles.width = 1; guidata(hObject, handles); if nargin > 3 load_image_Callback([], varargin{1}, handles); end % --- Outputs from this function are returned to the command line.

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function varargout = artistic_OutputFcn(hObject, eventdata, handles) % varargout cell array for returning output args (see VARARGOUT); % hObject handle to figure % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Get default command line output from handles structure varargout{1} = handles.output; % --- Executes on button press in load_image. function load_image_Callback(hObject, eventdata, handles) % hObject handle to load_image (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) if isempty(eventdata) [FileName,PathName] = uigetfile({'*.jpg; *.jpeg; *.png; *.bmp; *.hdf; *.pbm; *.pcx; *.pgm; *.pnm; *.ppm; *.ras; *.tif; *.tiff; *.xwd; *.dcm', 'All Image Files'; ... '*.dcm; *.img','DICOM (*.dcm,*.img)'; ... '*.jpg; *.jpeg','JPEG (*.jpg, *.jpeg)'; ... '*.png','Portable Network Graphics (*.png)'; ... '*.bmp','Windows Bitmap (*.bmp)'; ... '*.hdf','Hierarchical Data Format (*.hdf)'; ... '*.pbm','Portable Bitmap (*.pbm)'; ... '*.pcx','Windows Paintbrush (*.pcx)'; ... '*.pgm','Portable Graymap (*.pgm)'; ... '*.pnm','Portable Anymap (*.pnm)'; ... '*.ppm','Portable Pixmap (*.ppm)'; ... '*.ras','Sun Raster (*.ras)'; ... '*.tif; *.tiff','Tagged Image File Format (*.tif, *.tiff)'; ... '*.xwd','X Windows Dump (*.xwd)'; ... '*', 'All Files (*.*)'}, ... 'Load image'); if FileName [pathstr, namestr, extstr] = fileparts(FileName); if strcmpi(extstr,'.dcm') == 1 || strcmpi(extstr,'.img') == 1 % dicom image handles.img = double(dicomread([PathName,FileName])); handles.img = handles.img / max(handles.img(:));

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else handles.img = double(imread([PathName,FileName]))/255; end else return; end else % image data is passed handles.img = double(eventdata); handles.img = handles.img / max(handles.img(:)); end if isfield(handles,'out') handles = rmfield(handles,'out'); end guidata(handles.figure1, handles); axes(handles.image); imshow(handles.img,[handles.center-handles.width/2,handles.center+handles.width/2]); [nr,nc,N] = size(handles.img); s = 700/max(nr,nc); if s > 1, s = 1;, end h_graf = gca; % set(h_graf, 'Position', [161, 707-nr*s, nc*s, nr*s]); set(h_graf, 'Visible', 'On', 'XTick', [], 'YTick', []); h_but = findobj('Tag', 'create'); set(h_but, 'Enable', 'On'); h_show = findobj('Tag', 'show_img'); set(h_show, 'Enable', 'off'); % --- Executes on button press in create. function create_Callback(hObject, eventdata, handles) % hObject handle to create (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) filter = get(handles.Filter_Popupmenu,'value'); % set(hObject, 'Enable', 'off'); h_wait = findobj('Tag', 'wait'); set(h_wait, 'String', 'Please wait...');

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drawnow; sigma = handles.sigma; number = handles.number; q = handles.q; try switch filter case 1 % Gaussian low pass filter handles.out = lowpass2d(handles.img, sigma); case 2 handles.out = bfilter2(handles.img,sigma,[sigma 0.1]); % handles.out = bfilter2(handles.img,sigma); case 3 % Artistic filter if ndims(handles.img) == 3 handles.out = painter(handles.img, sigma, number, q/2); else handles.out = smoothing(handles.img, [],sigma, number, q/2); end case 4 % Bilateral and Cross-Bilateral Filter using the Bilateral Grid handles.out = bilateralFilter(handles.img, handles.img,0,1,sigma, 1,1); case 5 % Nonlocal means filtering handles.out = NLmeansfilter(handles.img, sigma, number, q); case 6 % Faster Kuwahara handles.out = FasterKuwahara(handles.img,5); case 7 % Frost filter handles.out = frost(handles.img); case 8 % Lee denoising filter handles.out = lee(handles.img); case 9 % Symmetric nearest neighbor edge-preserving filter handles.out = snn(handles.img,sigma);

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case 10 % Total variation image denoising handles.out = tvdenoise(handles.img,sigma,number); case 11 % Denoising using Fourth Order PDE handles.out = fpdepyou(handles.img,sigma); case 12 % Anisotropic Diffusion handles.out = anisodiff2D(handles.img,number,1/7,1/sigma,1); case 13 % Nonlocal means denoising options.k = sigma; % half size for the windows options.T = 0.1; % width of the gaussian, relative to max(M(:)) (=1 here) % options.max_dist = 15; % search width, the smaller the faster the algorithm will be options.max_dist = number; % search width, the smaller the faster the algorithm will be % options.ndims = 30; % number of dimension used for distance computation (PCA dim.reduc. to speed up) options.ndims = q; % number of dimension used for distance computation (PCA dim.reduc. to speed up) options.do_patchwise = 0; handles.out = perform_nl_means(handles.img,options); case 14 % Bayesian Least Squares - Gaussian Scale Mixture denoising options.sigma = sigma; % half size for the windows handles.out = perform_blsgsm_denoising(handles.img,options); end guidata(hObject, handles); axes(handles.image); imshow(handles.out,[handles.center-handles.width/2,handles.center+handles.width/2]); % imshow(handles.out,[0.3 0.7]); % set(handles.show_img, 'String', 'Show Original Image'); set(handles.show_img,'value',2); set(h_wait, 'String', ''); h_show = findobj('Tag', 'show_img'); set(h_show, 'Enable', 'on');

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h_save = findobj('Tag', 'save_effect'); set(h_save, 'Enable', 'on'); catch ME print_lasterror(ME) set(h_wait,'string','Error !!!'); end set(hObject, 'Enable', 'on'); % --- Executes during object creation, after setting all properties. function sigma_CreateFcn(hObject, eventdata, handles) % hObject handle to sigma (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc set(hObject,'BackgroundColor','white'); else set(hObject,'BackgroundColor',get(0,'defaultUicontrolBackgroundColor')); end function sigma_Callback(hObject, eventdata, handles) % hObject handle to sigma (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of sigma as text % str2double(get(hObject,'String')) returns contents of sigma as a double handles.sigma = str2double(get(hObject,'String')); guidata(hObject, handles); h_but = findobj('Tag', 'create'); set(h_but, 'Enable', 'On'); % --- Executes during object creation, after setting all properties. function number_CreateFcn(hObject, eventdata, handles) % hObject handle to number (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER.

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if ispc set(hObject,'BackgroundColor','white'); else set(hObject,'BackgroundColor',get(0,'defaultUicontrolBackgroundColor')); end function number_Callback(hObject, eventdata, handles) % hObject handle to number (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of number as text % str2double(get(hObject,'String')) returns contents of number as a double handles.number = str2double(get(hObject,'String')); guidata(hObject, handles); h_but = findobj('Tag', 'create'); set(h_but, 'Enable', 'On'); % --- Executes during object creation, after setting all properties. function q_CreateFcn(hObject, eventdata, handles) % hObject handle to q (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc set(hObject,'BackgroundColor','white'); else set(hObject,'BackgroundColor',get(0,'defaultUicontrolBackgroundColor')); end function q_Callback(hObject, eventdata, handles) % hObject handle to q (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of q as text % str2double(get(hObject,'String')) returns contents of q as a double handles.q = str2double(get(hObject,'String')); guidata(hObject, handles);

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h_but = findobj('Tag', 'create'); set(h_but, 'Enable', 'On'); % --- Executes on button press in togglebutton2. function togglebutton2_Callback(hObject, eventdata, handles) % hObject handle to togglebutton2 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hint: get(hObject,'Value') returns toggle state of togglebutton2 % --- Executes on button press in togglebutton3. function togglebutton3_Callback(hObject, eventdata, handles) % hObject handle to togglebutton3 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hint: get(hObject,'Value') returns toggle state of togglebutton3 % --- Executes on button press in artistic_effect. function artistic_effect_Callback(hObject, eventdata, handles) % hObject handle to artistic_effect (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hint: get(hObject,'Value') returns toggle state of artistic_effect % --- Executes during object creation, after setting all properties. function listbox1_CreateFcn(hObject, eventdata, handles) % hObject handle to listbox1 (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: listbox controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc set(hObject,'BackgroundColor','white'); else set(hObject,'BackgroundColor',get(0,'defaultUicontrolBackgroundColor')); end % --- Executes on button press in show_img. function show_img_Callback(hObject, eventdata, handles) % hObject handle to show_img (see GCBO)

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% eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) if ~isfield(handles,'img') return; end axes(handles.image); idx = get(handles.show_img,'value'); if ~isfield(handles,'out'); idx = 1; end switch idx case 1 imshow(handles.img,[handles.centerhandles.width/2,handles.center+handles.width/2]); case 2 imshow(handles.out,[handles.centerhandles.width/2,handles.center+handles.width/2]); case 3 diffimg = handles.img - handles.out; imagesc(diffimg,[-handles.width handles.width]); daspect([1 1 1]); colorbar; axis off; end % if strcmp(get(hObject, 'String'), 'Show Original Image') || ~isfield(handles,'out'); % imshow(handles.img,[handles.centerhandles.width/2,handles.center+handles.width/2]); % set(handles.show_img, 'String', 'Show Filtered Image'); % else % imshow(handles.out,[handles.centerhandles.width/2,handles.center+handles.width/2]); % set(handles.show_img, 'String', 'Show Original Image'); % end % --- Executes on button press in save_effect. function save_effect_Callback(hObject, eventdata, handles) % hObject handle to save_effect (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB

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% handles structure with handles and user data (see GUIDATA) [FileName,PathName] = uiputfile( ... {'*.png','Portable Network Graphics (*.png)'; ... '*.bmp','Windows Bitmap (*.bmp)'; ... '*.hdf','Hierarchical Data Format (*.hdf)'; ... '*.jpg','JPEG (*.jpg)'; ... '*.pbm','Portable Bitmap (*.pbm)'; ... '*.pcx','Windows Paintbrush (*.pcx)'; ... '*.pgm','Portable Graymap (*.pgm)'; ... '*.ppm','Portable Pixmap (*.ppm)'; ... '*.ras','Sun Raster (*.ras)'; ... '*.tif','Tagged Image File Format (*.tif)'; ... '*.xwd','X Windows Dump (*.xwd)'}, ... 'Save artistic effect'); if FileName imwrite(handles.out, [PathName,FileName]); end function Center_Input_Callback(hObject, eventdata, handles) % hObject handle to Center_Input (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of Center_Input as text % str2double(get(hObject,'String')) returns contents of Center_Input as a double handles.center = str2double(get(hObject,'String')); guidata(hObject, handles); h_but = findobj('Tag', 'create'); set(h_but, 'Enable', 'On'); show_img_Callback(hObject, eventdata, handles) % --- Executes during object creation, after setting all properties. function Center_Input_CreateFcn(hObject, eventdata, handles) % hObject handle to Center_Input (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc && isequal(get(hObject,'BackgroundColor'),

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get(0,'defaultUicontrolBackgroundColor')) set(hObject,'BackgroundColor','white'); end function Width_Input_Callback(hObject, eventdata, handles) % hObject handle to Width_Input (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: get(hObject,'String') returns contents of Width_Input as text % str2double(get(hObject,'String')) returns contents of Width_Input as a double handles.width = str2double(get(hObject,'String')); guidata(hObject, handles); h_but = findobj('Tag', 'create'); set(h_but, 'Enable', 'On'); show_img_Callback(hObject, eventdata, handles); % --- Executes during object creation, after setting all properties. function Width_Input_CreateFcn(hObject, eventdata, handles) % hObject handle to Width_Input (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: edit controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) set(hObject,'BackgroundColor','white'); end % --- Executes on selection change in Filter_Popupmenu. function Filter_Popupmenu_Callback(hObject, eventdata, handles) % hObject handle to Filter_Popupmenu (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) % Hints: contents = get(hObject,'String') returns Filter_Popupmenu contents as cell array % contents{get(hObject,'Value')} returns selected item from Filter_Popupmenu filter = get(handles.Filter_Popupmenu,'value'); switch filter case 1 % Gaussian low pass filter

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set(handles.helptext,'string','sigma: (=1) Gaussian window size'); case 2 set(handles.helptext,'string','sigma: Gaussian window size'); case 3 set(handles.helptext,'string',''); % handles.out = smoothing(handles.img, [],sigma, number, q/2); case 4 % Bilateral and Cross-Bilateral Filter using the Bilateral Grid set(handles.helptext,'string',sprintf('sigma(=3): sigmaSpatial')); % output = bilateralFilter( data, edge, ... % edgeMin, edgeMax, ... % sigmaSpatial, sigmaRange, ... % samplingSpatial, samplingRange ) case 5 % Nonlocal means filtering set(handles.helptext,'string',sprintf('sigma(=3): is the radio of search window\nnumber: (=2) is radio of similarity window\nArg 3 (=2): degree of filtering')); case 6 % Faster Kuwahara set(handles.helptext,'string',sprintf('sigma: (=5,9,13,4k+1) is the window size')); case 7 % Frost filter set(handles.helptext,'string','No parameters'); case 8 % Lee denoising filter set(handles.helptext,'string','No parameters'); case 9 % Symmetric nearest neighbor edge-preserving filter set(handles.helptext,'string',sprintf('sigma: (=2) is the window size')); case 10 % Total variation image denoising set(handles.helptext,'string',sprintf('sigma: (=3) is the amount of denoising\nnumber: (=10) is the number of steps')); case 11 % Denoising using Fourth Order PDE set(handles.helptext,'string',sprintf('sigma: (=10) is the number of iterations')); case 12

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% Anisotropic Diffusion set(handles.helptext,'string',sprintf('1/sigma: (=2) is gradient modulus threshold\nnumber: (=10) is the number of iterations')); case 13 % Nonlocal means denoising set(handles.helptext,'string',sprintf('sigma: (=3) is the half size for the windows\nnumber: (=4) is the search width\nArg 3: (=8) is the number of dimensions')); case 14 % Denoising using Fourth Order PDE set(handles.helptext,'string',sprintf('Not working')); end % --- Executes during object creation, after setting all properties. function Filter_Popupmenu_CreateFcn(hObject, eventdata, handles) % hObject handle to Filter_Popupmenu (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: popupmenu controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) set(hObject,'BackgroundColor','white'); end % --- Executes during object creation, after setting all properties. function show_img_CreateFcn(hObject, eventdata, handles) % hObject handle to show_img (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles empty - handles not created until after all CreateFcns called % Hint: popupmenu controls usually have a white background on Windows. % See ISPC and COMPUTER. if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) set(hObject,'BackgroundColor','white'); end

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