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Biochip: Biosensor or Bioprocessor That Utilizes Technologies of Modern Biology and Electronics in A Micro Scale

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Biochip

Biosensor or bioprocessor that utilizes


technologies of modern Biology and
Electronics in a micro scale.
Types of Biochip
DNA chip
Protein chip
Enzyme chip
Lab-on-a-chip
Biomolecular machine
Biocomputer
Physical methods
are the keys for many biological
problems

DNA sequencing
Protein structure
Spectrophotometry
Mass Spect
Electron microscope
Confocal
Bio-physical methods
DNA sequencing
Protein structure
Spectrophotometry
Mass Spect
Electron microscope
Confocal
Structure Determination
An ideal biochip
Size-portable
Save energy-long term usage
Low cost-mass production
High sensitivity-integration
Low sample requirement
Microarray-high thru put
Decreased invasiveness
Laboratory of Enzyme and Protein Engineering, Department of Biological Science and Technology, NCTU
ASI Atomic Scale Integration ULSI Ultra Large Scale Integration
LSI Large Scale Integration SSI Small Scale Integration
GSI Giga Scale Integration VLSI Very Large Scale Integration
MSI Medium Scale Integration ZSI Zero Scale Integration
Time evolution in computer technology from zero to atomic scale integration (Ciabrera et al., 1991; Nicolini, 1993).
Features and factors of size reduction in microchip-based analysis
TIBTECH DECEMBER 1999 (VOL 17)
The size matter

從分子的角度看生物與半導體晶片

Laboratory of Enzyme and Protein Engineering, Department of Biological Science and Technology, NCTU
Biomolecular Machine
Microtubules and Their Motors

Skeletal Muscle Myosin and muscle


contraction
A Proton Gradient Drives the
rotation of Bacterial Flagella
DNA as Molecular Machine
Construction and operation of the
molecular tweezers.
A DNA-fuelled molecular machinemade of DNA
Bernard Yurke*, Andrew J. Turber®eld*², Allen P. Mills Jr*, Friedrich
C. Simmel* & Jennifer L. Neumann*
NATURE | VOL 406 | 10 AUGUST 2000

Name Sequence Domain 1 Domain 2


A 5’ TGCCTTGTAAGAGCGACCAT CAACCTGGAATGCTTCGGAT 3’
B 5’ GGTCGCTCTTACAAGGCA CTGGTAACAATCACGGTCTATGCG 3’
C 5’ GGAGTCCTACTGTCTGAACTAACG ATCCGAAGCATTCCAGGT 3’
F 5’ CGCATAGACCGTGATTGTTACCAG CGTTAGTTCAGACAGTAGGACTCC TGCTACGA 3’
5’ GGTCGCTCTTACAAGGCA CAGCTAGTTTCACAGTGGCAAGTC 3’
5’ GCAGGCTTCTACATATCTGACGAG ATCCGAAGCATTCCAGGT 3’
F5’ CGCATAGACCGTGATTGTTACCAG CTCGTCAGATATGTAGAAGCCTGC ACGTCGAT 3’
F5’ GACTTGCCACTGTGAAACTAGCTG CGTTAGTTCAGACAGTAGGACTCC TGTCCAGA 3’
Biocomputer
Memory-The design of a biochip: a self-assembling molec
ular-scale memory, Protein Engineering, 1, 295 (1987)
Switching devise-Biochemical switching devise: bio
mimetic approach and application to neural network study, J. of Bi
otech, 109, 109 (1992)

Logic gate-A biochemical logic gate using an enzyme an


d its inhibitor, Biotech Progress (1999)
Wire-Femtosecond direct observation of charge transfer bet
ween bases in DNA. Proc Natl Acad Sci USA, 19, 14052 (2000)
Applications of DNA chip and microarray technology
Pharmacogenomics (2000) 1(3):289-307
Companies involved in developing microarray DNA-chip technology for pharmacogenomics
(from A to V) Pharmacogenomics (2000) 1(3):289-307
Components of a
DNA microchip.
Pharmacogenomics (2000) 1(3):289-307
Types of transducer
Electrical-current/voltage (FET, MOS),
charge, dielectricity
Optical-absorption, emission, phase change
, polarisation/absorption (SPR), opto-ether
mal
Thermal
Magnetic-NMR, mass spect
Mechanical, frequency-surface acoustic wa
ve, quartz balance
Electrochemical
Sensors
Principle:
Anode: semi-oxidation reaction
Cathode: semi-reduction reaction
Example: Biofuel cell
GOD
Anode: glucose gluconolactone + 2H+ + 2e-

Laccase
+ -
Cathode: O2 + 4H + 4e 2H2O
Biofuel Cell (J.A.C.S. 2001, 123, 8630)
Electronic Nose
(Biosen. & Bioele. 14, 1999 9-18)
Surface Plasma Resonance
(SPR)
Nanowire FET
(Sience 293, 17, August, 2001)
Semiconductor Devices as
Sensors of Biological Reactions

Photodiodes SAW

Mass
Light
Enzymatic Modified
Reaction Electron Electrode
EnzymeFET Charge
Heat

Thermometer

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