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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 242 55

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 48 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 55 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 3

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 22 6

Repositories

Showing 10 of 249 repositories
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 67 6 Updated Mar 6, 2025
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 7 3 236 (1 issue needs help) 7 Updated Mar 6, 2025
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 242 CC-BY-4.0 55 398 (2 issues need help) 55 Updated Mar 6, 2025
  • ncbi-gene Public
    monarch-initiative/ncbi-gene’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Mar 5, 2025
  • graph-agent-devops Public

    Working directory for reusable "simple" devops for the graph agent

    monarch-initiative/graph-agent-devops’s past year of commit activity
    HCL 0 BSD-3-Clause 0 0 0 Updated Mar 5, 2025
  • aurelian Public
    monarch-initiative/aurelian’s past year of commit activity
    Python 3 MIT 0 1 0 Updated Mar 5, 2025
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Python 22 BSD-3-Clause 6 189 (3 issues need help) 12 Updated Mar 5, 2025
  • pheval.llm Public

    Analysis of LLMs for Clinical Observations

    monarch-initiative/pheval.llm’s past year of commit activity
    Python 6 BSD-3-Clause 0 9 1 Updated Mar 5, 2025
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 23 BSD-3-Clause 4 14 1 Updated Mar 5, 2025
  • phenopacket-store-toolkit Public

    Toolkit for accessing, Q/C, and maintenance of Phenopacket Store

    monarch-initiative/phenopacket-store-toolkit’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Mar 5, 2025
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