Pipeline to highlight genomic mutations in bacterial genomes

Final Project WS2019: Alexander Amberger, Matthias Gruber, Simone Zimmerl

A web dashboard detailing the results of a large study of the biodiversity of navel bacteria in human subjects.

Web page designed using Plotly plots based on bacterial samples found in the human navel.

Full genome of E. coli, strain K12 MG1655

Bacterial colonies attaching themselves to human brain organoids, as a neural link to a silicon computer

The Feature-Assisted Segmenter/Tracker:https://mackdurham.group.shef.ac.uk/FAST_DokuWiki/dokuwiki

Code for https://doi.org/10.1094/pdis-05-20-0945-re

Data visualization project which allows users to explore a JSON dataset through a JavaScript enabled interface. Data is collected from a study of belly button Flora. JavaScript | Bootstrap | CSS

AU microbiome molecular exploratory analyses for NSW

Bacterial plasmid annotation pipeline

Nanopore sequencing experimental protocols and computational pipelines

Nextflow pipeline incorporating the TRACS alignment step alone

A theorectical investigation into mechanisms of drought legacy formation and influencing factors in soil microbiomes using DEMENTpy.

Image Classification of Bacteria using CNN

WIP & POC: Count Viral and other non-human genome signatures in Human NGS data

syntaxic annotation pipeline for bacteria

Statistical analysis of bacterial dispersal in R